Clone BS11375 Report

Search the DGRC for BS11375

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG12091-RA
Protein status:BS11375.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11375.3prime Sequence

886 bp (825 high quality bases) assembled on 2006-04-18

> BS11375.3prime
ATGGTCTAGAAAGCTTTCACATCGCCACGGTGGCCAGGACAACGGTGATG
TCGTCCGGCTTGCCGCCACGCGCCTGAATGTTATTCCTCCTGGCGCTGAG
GGCGAAGGGCGAGAGGAACTCGCTGTTGAGGGACAGGGTGCGCGCCATCA
GCGCCAGGCTGTTGGCCGTCATCTGGAGCTTGACGGGATCGCGTTCGCCC
TCCACCTCGCTAAGCACCTGCAGCATTAGATCCTCGGGCACGTTGTCGAA
CACTCCGTCGGTTGCAATGAGAATCACGTCGCCATCCCGCACCGGAAAGC
TCATCGTGTCCGCCGACTCAGGGCTGTCGCTGAGGACATTGGGCCCATGT
CCCGGCGGCGGCAATGACAGTTGGAAGGGTGTGTTAAAATAGTGCTGCTG
CTCCTCGGACTTGTGAACCACCTGGCCTTCGCGCACCACAACGAAGCCGC
TGTCGCCGATGTTGGCCGTGTGCACGGTGCTCGTCTCACGGTTGAGGATC
AGGACGCAGGCGGTGCTGCTGCCCAGTATGGGCTTCTTCTGCTCCATCAG
CTCGCAGTAGCTGTAGGCCAGCAGGTTGACTGGTCGTTGGGGATTAAAGT
GGCTGCACTGCACCAACCGCTCACAGGTGCGCATCAGGAACGATGAAAAC
TCTCCGGGATCGATGCCATAGCTTCGCCAGCCGCCCACGCCGTCGGCCAC
GCCCATGACATCGGCACTGGCGGTGGAGGCCTTGAACCATGAGTCCTCGC
CGTACTTTCCCGGCTTGTACTTTGTGTCGCAGGTTGTCCTTGGCGAAGCC
GCACACCACCGACACGAAACGGGGTCGTGGGGCGCCCGAGGATCCTGGTG
TCGCTCCCGACTTGGTGGCCCCCTTGGCTGCTGCCC

BS11375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-PA 966 CG12091-RA 211..966 772..17 3780 100 Minus
CG12091-PA 966 CG12091-RA 98..212 886..772 575 100 Minus
CG7615-PA 945 fig-RA 247..278 706..675 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-RB 1907 CG12091-RB 372..1240 886..17 4325 99.9 Minus
CG12091-RA 1824 CG12091-RA 372..1240 886..17 4325 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1535596..1536464 17..886 4300 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 11:36:33 has no hits.

BS11375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:11 Download gff for BS11375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12091-PA 98..966 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:05 Download gff for BS11375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12091-PA 98..966 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:40:30 Download gff for BS11375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 372..1243 14..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:59 Download gff for BS11375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 372..1243 14..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:59 Download gff for BS11375.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1535593..1536464 14..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:40:30 Download gff for BS11375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1535593..1536464 14..886 99   Plus

BS11375.5prime Sequence

896 bp (796 high quality bases) assembled on 2006-04-18

> BS11375.5prime
GAAGTTATCAGTCGACATGCACTCGTCACTCAGCTGGACCTCGCGTGCGA
TCTCTCGCGCCCTGCGCAGCAGCTTCTCCACGCTCCTGGAAACGGCCACG
GGTGGCGGAAGTGGGGCAGCAGCCAAGGGGGCCACCAAGTCGGGAGCGAC
ACCAGGATCCTCGGGCGCCCCACGACCCCGTTTCGTGTCGGTGGTGTGCG
GCTTCGCCAAGGACAACCTGCGACACAAGTACAAGCCGGGAAAGTACGGC
GAGGACTCATGGTTCAAGGCCTCCACCGCCAGTGCCGATGTCATGGGCGT
GGCCGACGGCGTGGGCGGCTGGCGAAGCTATGGCATCGATCCCGGAGAGT
TTTCATCGTTCCTGATGCGCACCTGTGAGCGGTTGGTGCAGTGCAGCCAC
TTTAATCCCCAACGACCAGTCAACCTGCTGGCCTACAGCTACTGCGAGCT
GATGGAGCAGAAGAAGCCCATACTGGGCAGCAGCACCGCCTGCGTCCTGA
TCCTCAACCGTGAGACGAGCACCGTGCACACGGCCAACATCGGCGACAGC
GGCTTCGTTGTGGTGCGCGAAGGCCAGGTGGTTCACAAGTCCGAGGAGCA
GCAGCACTATTTTAACACACCCTTCCAACTGTCATTGCCGCCGCCGGGAC
ATGGGCCCAATGTCCTCAGCGACAGCCCTGAGTCGGCGGACACGATGAGC
TTTCCGGTGCGGGATGGCGACGTGATTCTCATTGCAACCGACGGAGTGTT
CGACAACGTGCCCGAGGATCTAATGCTGCAGGTGCTTAGCGAGGTGGAGG
GCGAACGCGATCCCGTCAAGCTCCAGATGACGGCCAACAGCCTGGCGCTG
ATGGCGCGCACCCTGTCCCTCAACAGCGAGTTCCTCTCGCCCTTCG

BS11375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-PA 966 CG12091-RA 1..880 17..896 4400 100 Plus
CG7615-PA 945 fig-RA 247..278 293..324 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-RB 1907 CG12091-RB 275..1154 17..896 4400 100 Plus
CG12091-RA 1824 CG12091-RA 275..1154 17..896 4400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1535682..1536561 896..17 4400 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:34:52 has no hits.

BS11375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:12 Download gff for BS11375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12091-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:06 Download gff for BS11375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12091-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:41:17 Download gff for BS11375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 273..1154 13..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:37 Download gff for BS11375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 273..1154 13..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:37 Download gff for BS11375.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1535682..1536563 13..896 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:41:17 Download gff for BS11375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1535682..1536563 13..896 99   Minus

BS11375.complete Sequence

998 bp assembled on 2006-11-01

GenBank Submission: FJ636842

> BS11375.complete
GAAGTTATCAGTCGACATGCACTCGTCACTCAGCTGGACCTCGCGTGCGA
TCTCTCGCGCCCTGCGCAGCAGCTTCTCCACGCTCCTGGAAACGGCCACG
GGTGGCGGAAGTGGGGCAGCAGCCAAGGGGGCCACCAAGTCGGGAGCGAC
ACCAGGATCCTCGGGCGCCCCACGACCCCGTTTCGTGTCGGTGGTGTGCG
GCTTCGCCAAGGACAACCTGCGACACAAGTACAAGCCGGGAAAGTACGGC
GAGGACTCATGGTTCAAGGCCTCCACCGCCAGTGCCGATGTCATGGGCGT
GGCCGACGGCGTGGGCGGCTGGCGAAGCTATGGCATCGATCCCGGAGAGT
TTTCATCGTTCCTGATGCGCACCTGTGAGCGGTTGGTGCAGTGCAGCCAC
TTTAATCCCCAACGACCAGTCAACCTGCTGGCCTACAGCTACTGCGAGCT
GATGGAGCAGAAGAAGCCCATACTGGGCAGCAGCACCGCCTGCGTCCTGA
TCCTCAACCGTGAGACGAGCACCGTGCACACGGCCAACATCGGCGACAGC
GGCTTCGTTGTGGTGCGCGAAGGCCAGGTGGTTCACAAGTCCGAGGAGCA
GCAGCACTATTTTAACACACCCTTCCAACTGTCATTGCCGCCGCCGGGAC
ATGGGCCCAATGTCCTCAGCGACAGCCCTGAGTCGGCGGACACGATGAGC
TTTCCGGTGCGGGATGGCGACGTGATTCTCATTGCAACCGACGGAGTGTT
CGACAACGTGCCCGAGGATCTAATGCTGCAGGTGCTTAGCGAGGTGGAGG
GCGAACGCGATCCCGTCAAGCTCCAGATGACGGCCAACAGCCTGGCGCTG
ATGGCGCGCACCCTGTCCCTCAACAGCGAGTTCCTCTCGCCCTTCGCCCT
CAGCGCCAGGAGGAATAACATTCAGGCGCGTGGCGGCAAGCCGGACGACA
TCACCGTTGTCCTGGCCACCGTGGCGATGTGAAAGCTTTCTAGACCAT

BS11375.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-RB 966 CG12091-PB 1..966 17..982 4830 100 Plus
CG12091-RA 966 CG12091-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-RB 1907 CG12091-RB 275..1240 17..982 4830 100 Plus
CG12091-RA 1824 CG12091-RA 275..1240 17..982 4830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1535596..1536561 982..17 4830 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:56:28 has no hits.

BS11375.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:21 Download gff for BS11375.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 1..966 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:32 Download gff for BS11375.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 269..1239 13..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:54 Download gff for BS11375.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 275..1239 17..981 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:21 Download gff for BS11375.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 269..1239 13..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:35 Download gff for BS11375.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 275..1239 17..981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:35 Download gff for BS11375.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1535597..1536561 17..981 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:54 Download gff for BS11375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1535597..1536561 17..981 100   Minus

BS11375.pep Sequence

Translation from 16 to 981

> BS11375.pep
MHSSLSWTSRAISRALRSSFSTLLETATGGGSGAAAKGATKSGATPGSSG
APRPRFVSVVCGFAKDNLRHKYKPGKYGEDSWFKASTASADVMGVADGVG
GWRSYGIDPGEFSSFLMRTCERLVQCSHFNPQRPVNLLAYSYCELMEQKK
PILGSSTACVLILNRETSTVHTANIGDSGFVVVREGQVVHKSEEQQHYFN
TPFQLSLPPPGHGPNVLSDSPESADTMSFPVRDGDVILIATDGVFDNVPE
DLMLQVLSEVEGERDPVKLQMTANSLALMARTLSLNSEFLSPFALSARRN
NIQARGGKPDDITVVLATVAM*

BS11375.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-PB 321 CG12091-PB 1..321 1..321 1657 100 Plus
CG12091-PA 321 CG12091-PA 1..321 1..321 1657 100 Plus
CG15035-PA 374 CG15035-PA 107..373 54..319 860 59.9 Plus
fig-PA 314 CG7615-PA 43..309 54..319 607 45.5 Plus