Clone Sequence Records
BS11375.3prime Sequence
886 bp (825 high quality bases) assembled on 2006-04-18
> BS11375.3prime
ATGGTCTAGAAAGCTTTCACATCGCCACGGTGGCCAGGACAACGGTGATG
TCGTCCGGCTTGCCGCCACGCGCCTGAATGTTATTCCTCCTGGCGCTGAG
GGCGAAGGGCGAGAGGAACTCGCTGTTGAGGGACAGGGTGCGCGCCATCA
GCGCCAGGCTGTTGGCCGTCATCTGGAGCTTGACGGGATCGCGTTCGCCC
TCCACCTCGCTAAGCACCTGCAGCATTAGATCCTCGGGCACGTTGTCGAA
CACTCCGTCGGTTGCAATGAGAATCACGTCGCCATCCCGCACCGGAAAGC
TCATCGTGTCCGCCGACTCAGGGCTGTCGCTGAGGACATTGGGCCCATGT
CCCGGCGGCGGCAATGACAGTTGGAAGGGTGTGTTAAAATAGTGCTGCTG
CTCCTCGGACTTGTGAACCACCTGGCCTTCGCGCACCACAACGAAGCCGC
TGTCGCCGATGTTGGCCGTGTGCACGGTGCTCGTCTCACGGTTGAGGATC
AGGACGCAGGCGGTGCTGCTGCCCAGTATGGGCTTCTTCTGCTCCATCAG
CTCGCAGTAGCTGTAGGCCAGCAGGTTGACTGGTCGTTGGGGATTAAAGT
GGCTGCACTGCACCAACCGCTCACAGGTGCGCATCAGGAACGATGAAAAC
TCTCCGGGATCGATGCCATAGCTTCGCCAGCCGCCCACGCCGTCGGCCAC
GCCCATGACATCGGCACTGGCGGTGGAGGCCTTGAACCATGAGTCCTCGC
CGTACTTTCCCGGCTTGTACTTTGTGTCGCAGGTTGTCCTTGGCGAAGCC
GCACACCACCGACACGAAACGGGGTCGTGGGGCGCCCGAGGATCCTGGTG
TCGCTCCCGACTTGGTGGCCCCCTTGGCTGCTGCCC
BS11375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12091-PA | 966 | CG12091-RA | 211..966 | 772..17 | 3780 | 100 | Minus |
CG12091-PA | 966 | CG12091-RA | 98..212 | 886..772 | 575 | 100 | Minus |
CG7615-PA | 945 | fig-RA | 247..278 | 706..675 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12091-RB | 1907 | CG12091-RB | 372..1240 | 886..17 | 4325 | 99.9 | Minus |
CG12091-RA | 1824 | CG12091-RA | 372..1240 | 886..17 | 4325 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1535596..1536464 | 17..886 | 4300 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:36:33 has no hits.
BS11375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:11 Download gff for
BS11375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-PA | 98..966 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:05 Download gff for
BS11375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-PA | 98..966 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:40:30 Download gff for
BS11375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-RA | 372..1243 | 14..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:59 Download gff for
BS11375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-RA | 372..1243 | 14..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:59 Download gff for
BS11375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1535593..1536464 | 14..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:40:30 Download gff for
BS11375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1535593..1536464 | 14..886 | 99 | | Plus |
BS11375.5prime Sequence
896 bp (796 high quality bases) assembled on 2006-04-18
> BS11375.5prime
GAAGTTATCAGTCGACATGCACTCGTCACTCAGCTGGACCTCGCGTGCGA
TCTCTCGCGCCCTGCGCAGCAGCTTCTCCACGCTCCTGGAAACGGCCACG
GGTGGCGGAAGTGGGGCAGCAGCCAAGGGGGCCACCAAGTCGGGAGCGAC
ACCAGGATCCTCGGGCGCCCCACGACCCCGTTTCGTGTCGGTGGTGTGCG
GCTTCGCCAAGGACAACCTGCGACACAAGTACAAGCCGGGAAAGTACGGC
GAGGACTCATGGTTCAAGGCCTCCACCGCCAGTGCCGATGTCATGGGCGT
GGCCGACGGCGTGGGCGGCTGGCGAAGCTATGGCATCGATCCCGGAGAGT
TTTCATCGTTCCTGATGCGCACCTGTGAGCGGTTGGTGCAGTGCAGCCAC
TTTAATCCCCAACGACCAGTCAACCTGCTGGCCTACAGCTACTGCGAGCT
GATGGAGCAGAAGAAGCCCATACTGGGCAGCAGCACCGCCTGCGTCCTGA
TCCTCAACCGTGAGACGAGCACCGTGCACACGGCCAACATCGGCGACAGC
GGCTTCGTTGTGGTGCGCGAAGGCCAGGTGGTTCACAAGTCCGAGGAGCA
GCAGCACTATTTTAACACACCCTTCCAACTGTCATTGCCGCCGCCGGGAC
ATGGGCCCAATGTCCTCAGCGACAGCCCTGAGTCGGCGGACACGATGAGC
TTTCCGGTGCGGGATGGCGACGTGATTCTCATTGCAACCGACGGAGTGTT
CGACAACGTGCCCGAGGATCTAATGCTGCAGGTGCTTAGCGAGGTGGAGG
GCGAACGCGATCCCGTCAAGCTCCAGATGACGGCCAACAGCCTGGCGCTG
ATGGCGCGCACCCTGTCCCTCAACAGCGAGTTCCTCTCGCCCTTCG
BS11375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12091-PA | 966 | CG12091-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
CG7615-PA | 945 | fig-RA | 247..278 | 293..324 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12091-RB | 1907 | CG12091-RB | 275..1154 | 17..896 | 4400 | 100 | Plus |
CG12091-RA | 1824 | CG12091-RA | 275..1154 | 17..896 | 4400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1535682..1536561 | 896..17 | 4400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:34:52 has no hits.
BS11375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:12 Download gff for
BS11375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:06 Download gff for
BS11375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:41:17 Download gff for
BS11375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-RA | 273..1154 | 13..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:37 Download gff for
BS11375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-RA | 273..1154 | 13..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:37 Download gff for
BS11375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1535682..1536563 | 13..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:41:17 Download gff for
BS11375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1535682..1536563 | 13..896 | 99 | | Minus |
BS11375.complete Sequence
998 bp assembled on 2006-11-01
GenBank Submission: FJ636842
> BS11375.complete
GAAGTTATCAGTCGACATGCACTCGTCACTCAGCTGGACCTCGCGTGCGA
TCTCTCGCGCCCTGCGCAGCAGCTTCTCCACGCTCCTGGAAACGGCCACG
GGTGGCGGAAGTGGGGCAGCAGCCAAGGGGGCCACCAAGTCGGGAGCGAC
ACCAGGATCCTCGGGCGCCCCACGACCCCGTTTCGTGTCGGTGGTGTGCG
GCTTCGCCAAGGACAACCTGCGACACAAGTACAAGCCGGGAAAGTACGGC
GAGGACTCATGGTTCAAGGCCTCCACCGCCAGTGCCGATGTCATGGGCGT
GGCCGACGGCGTGGGCGGCTGGCGAAGCTATGGCATCGATCCCGGAGAGT
TTTCATCGTTCCTGATGCGCACCTGTGAGCGGTTGGTGCAGTGCAGCCAC
TTTAATCCCCAACGACCAGTCAACCTGCTGGCCTACAGCTACTGCGAGCT
GATGGAGCAGAAGAAGCCCATACTGGGCAGCAGCACCGCCTGCGTCCTGA
TCCTCAACCGTGAGACGAGCACCGTGCACACGGCCAACATCGGCGACAGC
GGCTTCGTTGTGGTGCGCGAAGGCCAGGTGGTTCACAAGTCCGAGGAGCA
GCAGCACTATTTTAACACACCCTTCCAACTGTCATTGCCGCCGCCGGGAC
ATGGGCCCAATGTCCTCAGCGACAGCCCTGAGTCGGCGGACACGATGAGC
TTTCCGGTGCGGGATGGCGACGTGATTCTCATTGCAACCGACGGAGTGTT
CGACAACGTGCCCGAGGATCTAATGCTGCAGGTGCTTAGCGAGGTGGAGG
GCGAACGCGATCCCGTCAAGCTCCAGATGACGGCCAACAGCCTGGCGCTG
ATGGCGCGCACCCTGTCCCTCAACAGCGAGTTCCTCTCGCCCTTCGCCCT
CAGCGCCAGGAGGAATAACATTCAGGCGCGTGGCGGCAAGCCGGACGACA
TCACCGTTGTCCTGGCCACCGTGGCGATGTGAAAGCTTTCTAGACCAT
BS11375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12091-RB | 966 | CG12091-PB | 1..966 | 17..982 | 4830 | 100 | Plus |
CG12091-RA | 966 | CG12091-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12091-RB | 1907 | CG12091-RB | 275..1240 | 17..982 | 4830 | 100 | Plus |
CG12091-RA | 1824 | CG12091-RA | 275..1240 | 17..982 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1535596..1536561 | 982..17 | 4830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:56:28 has no hits.
BS11375.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:21 Download gff for
BS11375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-RA | 1..966 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:32 Download gff for
BS11375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-RA | 269..1239 | 13..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:54 Download gff for
BS11375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-RA | 275..1239 | 17..981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:21 Download gff for
BS11375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-RA | 269..1239 | 13..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:35 Download gff for
BS11375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12091-RA | 275..1239 | 17..981 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:35 Download gff for
BS11375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1535597..1536561 | 17..981 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:54 Download gff for
BS11375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1535597..1536561 | 17..981 | 100 | | Minus |
BS11375.pep Sequence
Translation from 16 to 981
> BS11375.pep
MHSSLSWTSRAISRALRSSFSTLLETATGGGSGAAAKGATKSGATPGSSG
APRPRFVSVVCGFAKDNLRHKYKPGKYGEDSWFKASTASADVMGVADGVG
GWRSYGIDPGEFSSFLMRTCERLVQCSHFNPQRPVNLLAYSYCELMEQKK
PILGSSTACVLILNRETSTVHTANIGDSGFVVVREGQVVHKSEEQQHYFN
TPFQLSLPPPGHGPNVLSDSPESADTMSFPVRDGDVILIATDGVFDNVPE
DLMLQVLSEVEGERDPVKLQMTANSLALMARTLSLNSEFLSPFALSARRN
NIQARGGKPDDITVVLATVAM*
BS11375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12091-PB | 321 | CG12091-PB | 1..321 | 1..321 | 1657 | 100 | Plus |
CG12091-PA | 321 | CG12091-PA | 1..321 | 1..321 | 1657 | 100 | Plus |
CG15035-PA | 374 | CG15035-PA | 107..373 | 54..319 | 860 | 59.9 | Plus |
fig-PA | 314 | CG7615-PA | 43..309 | 54..319 | 607 | 45.5 | Plus |