Clone Sequence Records
BS11379.3prime Sequence
895 bp (789 high quality bases) assembled on 2006-04-18
> BS11379.3prime
ATGGTCTAGAAAGCTTCTAATTCGGATTGAACTGGAAGAAGTCCACGTTG
AGATCGAGAATAGCCTCTGTGTTGGGCGTTTCCTTCATGGTCAGGGCCTC
CACGGCATTATCGCTGGCATGATCGTAGCCATGGTTCACAGTCGGAGGAG
CAGTTGCCACTGGCGGCTGCATAAGATCGCTGACGTTTCTAAGCAGACTC
TCCTCGGAAGGCGGATGAAGTTGACCGCCCGCCGATAGATTGAGACGCTG
TGCAGCCTCGTCTGTGAGCGGATCGTCCAGCGACATGCTCAACTCTGCGT
AGACCACCAGATTGCGGGCTCCTTCACTACCGCTGCCGGCAACCAAGGCC
GCTCCCTCTGATTCCGGCATCGGTGCCAGCGGCGACTCCATGGCGGACAT
ATCCAACGCATACTGACCCTCGGGTATGCCCAAAACTCGTGCAATTCGTG
CATTTACAAAATGCAGTCCAGAGGTATTCCGTATAAGCCGTTGGCTGCGC
AATTGCAGCTGCTCCACAAAGTCGTTAAGTTCGTTAAGAAAGAGATCAGA
GCGCTGTTCCTCGCTGAGATGGGAATGCCGCTGCAGTTGGGCGGTCAGAA
GGCCGAACAGCGACGGCGTGGAGGGAGGATGAACCGTTGATGGTACTGTA
GCTACAGCTACAGGTGGTGTCTGCTCGCCCGGACGCGGCATGTGCTCTGG
GAATTTGACAAAGTGACGCTGCAGACGGCGTCCCAAAAAGATCTTTCCAC
AGCCGGGACAAACGGCATTTTTGGGCACGGCTCGTTGGATGGTTGTCGTT
GTGGTCGGTTCCTGGCTTATACTGACGCTGCTGCTGACACTCGTGCTTTT
CGGCGCTGCCATGGGTGCCCGGTAGTCCTTGTCCCGCAAGTCGGC
BS11379.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13005-PA | 1443 | CG13005-RA | 565..1443 | 895..17 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13005-RA | 2027 | CG13005-RA | 675..1556 | 895..14 | 4410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16804402..16805283 | 895..14 | 4410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:05:23 has no hits.
BS11379.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:17 Download gff for
BS11379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-PA | 565..1443 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:13 Download gff for
BS11379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-PA | 565..1443 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:31:00 Download gff for
BS11379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 652..1533 | 14..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:35 Download gff for
BS11379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 675..1556 | 14..895 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:35 Download gff for
BS11379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16804402..16805283 | 14..895 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:31:00 Download gff for
BS11379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16698435..16699316 | 14..895 | 100 | | Minus |
BS11379.5prime Sequence
934 bp (804 high quality bases) assembled on 2006-04-18
> BS11379.5prime
GAAGTTATCAGTCGACATGAAGCATCTCCTGGAGGATCCCTCGGTCCTGG
CCGAGCTGCAGGTGCTGCCGGATAAGACCGGTGGTGTACAGGATCGACAG
GAGGCCGCCAAGAATCCTGCAGAGAATTCCGTGCCCGACGAAGATTTGCC
GGCTGCAGGAGGCGATTTGCTACGCGTTAAGGATACTCTGGGCCAGCTGG
CCTGCAGTCTGCACAAGCTGTCCAAAAACGATCACATAGTCATCGATCGA
AAGCGCCATCAGGTGATTCGCACAGATGCGGCTACGCAACAATTAACGAT
TTACCGCTGTCCGGATCCCGCCGTCATGGGGATTCGCCCGGCGATAGAGA
AAAATGCCCAGAATCCGCCTGCCAAAGTGGGTAGACCATCGAAAAGAGCC
TGTTCGGTTGCCACCGCTCCTGTGGCGAAGAAACCAACACTAGCGGAGCA
AAAACCTGCTCCCGACACCCATCGCACTAGATCCGGTCGCCAGGTGCGCA
GCTTGATGCCACAGCCCGCTCCCGTGACCAGTGGCTCAGCGGTTGAGCCA
AGTTCTGCCCGCATGCTTGAGATGCTGGTGGCCGACTTGCGGGACAAGGA
CTACCGGGCACCCATGGCAGCGCCGAAAAGCACGAGTGTCAGCAGCAGCG
TCAGTATAAGCCAGGAACCGACCACAACGACAACCATCCAACGAGCCGTG
CCCAAAAATGCCGTTTGTCCCGGCTGTGGAAAGATCTTTTTGGGACGCCG
TCTGCAGCGTCACTTTGTCAAATTCCCAGAGCACATGCCGCGTCCGGGCG
AGCAGACACCACCTGTAGCTGTAGCTACAGTACCATCAACGGTTCATCCT
CCCTCCCGCCGTCGCTGTTCGGCCTTCTGACCGCCCACTGCAGCGGCATT
CCATCTCAGCGAGGACAGCGCTCTGATCTCTTTC
BS11379.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13005-PA | 1443 | CG13005-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
| CG13005-PA | 1443 | CG13005-RA | 842..872 | 857..887 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13005-RA | 2027 | CG13005-RA | 111..1032 | 17..934 | 4510 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16804070..16804759 | 249..934 | 3250 | 99.4 | Plus |
| X | 23542271 | X | 16803760..16803992 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:06:19 has no hits.
BS11379.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:18 Download gff for
BS11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-PA | 1..922 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:14 Download gff for
BS11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-PA | 1..922 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:30 Download gff for
BS11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 88..1009 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:06 Download gff for
BS11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 111..1032 | 17..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:06 Download gff for
BS11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16803760..16803992 | 17..249 | 100 | -> | Plus |
| X | 16804071..16804759 | 250..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:30 Download gff for
BS11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16697793..16698025 | 17..249 | 100 | -> | Plus |
| arm_X | 16698104..16698792 | 250..934 | 99 | | Plus |
BS11379.complete Sequence
1475 bp assembled on 2006-11-01
GenBank Submission: FJ636843
> BS11379.complete
GAAGTTATCAGTCGACATGAAGCATCTCCTGGAGGATCCCTCGGTCCTGG
CCGAGCTGCAGGTGCTGCCGGATAAGACCGGTGGTGTACAGGATCGACAG
GAGGCCGCCAAGAATCCTGCAGAGAATTCCGTGCCCGACGAAGATTTGCC
GGCTGCAGGAGGCGATTTGCTACGCGTTAAGGATACTCTGGGCCAGCTGG
CCTGCAGTCTGCACAAGCTGTCCAAAAACGATCACATAGTCATCGATCGA
AAGCGCCATCAGGTGATTCGCACAGATGCGGCTACGCAACAATTAACGAT
TTACCGCTGTCCGGATCCCGCCGTCATGGGGATTCGCCCGGCGATAGAGA
AAAATGCCCAGAATCCGCCTGCCAAAGTGGGTAGACCATCGAAAAGAGCC
TGTTCGGTTGCCACCGCTCCTGTGGCGAAGAAACCAACACTAGCGGAGCA
AAAACCTGCTCCCGACACCCATCGCACTAGATCCGGTCGCCAGGTGCGCA
GCTTGATGCCACAGCCCGCTCCCGTGACCAGTGGCTCAGCGGTTGAGCCA
AGTTCTGCCCGCATGCTTGAGATGCTGGTGGCCGACTTGCGGGACAAGGA
CTACCGGGCACCCATGGCAGCGCCGAAAAGCACGAGTGTCAGCAGCAGCG
TCAGTATAAGCCAGGAACCGACCACAACGACAACCATCCAACGAGCCGTG
CCCAAAAATGCCGTTTGTCCCGGCTGTGGAAAGATCTTTTTGGGACGCCG
TCTGCAGCGTCACTTTGTCAAATTCCCAGAGCACATGCCGCGTCCGGGCG
AGCAGACACCACCTGTAGCTGTAGCTACAGTACCATCAACGGTTCATCCT
CCCTCCACGCCGTCGCTGTTCGGCCTTCTGACCGCCCAACTGCAGCGGCA
TTCCCATCTCAGCGAGGAACAGCGCTCTGATCTCTTTCTTAACGAACTTA
ACGACTTTGTGGAGCAGCTGCAATTGCGCAGCCAACGGCTTATACGGAAT
ACCTCTGGACTGCATTTTGTAAATGCACGAATTGCACGAGTTTTGGGCAT
ACCCGAGGGTCAGTATGCGTTGGATATGTCCGCCATGGAGTCGCCGCTGG
CACCGATGCCGGAATCAGAGGGAGCGGCCTTGGTTGCCGGCAGCGGTAGT
GAAGGAGCCCGCAATCTGGTGGTCTACGCAGAGTTGAGCATGTCGCTGGA
CGATCCGCTCACAGACGAGGCTGCACAGCGTCTCAATCTATCGGCGGGCG
GTCAACTTCATCCGCCTTCCGAGGAGAGTCTGCTTAGAAACGTCAGCGAT
CTTATGCAGCCGCCAGTGGCAACTGCTCCTCCGACTGTGAACCATGGCTA
CGATCATGCCAGCGATAATGCCGTGGAGGCCCTGACCATGAAGGAAACGC
CCAACACAGAGGCTATTCTCGATCTCAACGTGGACTTCTTCCAGTTCAAT
CCGAATTAGAAGCTTTCTAGACCAT
BS11379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13005-RA | 1443 | CG13005-PA | 1..1443 | 17..1459 | 7215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13005-RA | 2027 | CG13005-RA | 111..1556 | 17..1462 | 7230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16804070..16805283 | 249..1462 | 6070 | 100 | Plus |
| X | 23542271 | X | 16803760..16803992 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:01:26 has no hits.
BS11379.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:29 Download gff for
BS11379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 1..1443 | 17..1459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:40 Download gff for
BS11379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 81..1523 | 17..1459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:10 Download gff for
BS11379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 88..1530 | 17..1459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:29 Download gff for
BS11379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 81..1523 | 17..1459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:32 Download gff for
BS11379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 111..1553 | 17..1459 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:32 Download gff for
BS11379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16803760..16803992 | 17..249 | 100 | -> | Plus |
| X | 16804071..16805280 | 250..1459 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:10 Download gff for
BS11379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16697793..16698025 | 17..249 | 100 | -> | Plus |
| arm_X | 16698104..16699313 | 250..1459 | 100 | | Plus |
BS11379.pep Sequence
Translation from 16 to 1458
> BS11379.pep
MKHLLEDPSVLAELQVLPDKTGGVQDRQEAAKNPAENSVPDEDLPAAGGD
LLRVKDTLGQLACSLHKLSKNDHIVIDRKRHQVIRTDAATQQLTIYRCPD
PAVMGIRPAIEKNAQNPPAKVGRPSKRACSVATAPVAKKPTLAEQKPAPD
THRTRSGRQVRSLMPQPAPVTSGSAVEPSSARMLEMLVADLRDKDYRAPM
AAPKSTSVSSSVSISQEPTTTTTIQRAVPKNAVCPGCGKIFLGRRLQRHF
VKFPEHMPRPGEQTPPVAVATVPSTVHPPSTPSLFGLLTAQLQRHSHLSE
EQRSDLFLNELNDFVEQLQLRSQRLIRNTSGLHFVNARIARVLGIPEGQY
ALDMSAMESPLAPMPESEGAALVAGSGSEGARNLVVYAELSMSLDDPLTD
EAAQRLNLSAGGQLHPPSEESLLRNVSDLMQPPVATAPPTVNHGYDHASD
NAVEALTMKETPNTEAILDLNVDFFQFNPN*
BS11379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13005-PA | 480 | CG13005-PA | 1..480 | 1..480 | 2457 | 100 | Plus |
