Clone Sequence Records
BS11381.3prime Sequence
946 bp (776 high quality bases) assembled on 2006-04-18
> BS11381.3prime
ATGGTCTAGAAAGCTTTTAGAGGCACTGTCCTTCGTGGAGGACGCACCAG
TGCGGAATAACTGCATCCGCATGGATTCCGCGCGCCAGGAGTCGCTCCCG
GTAGCGGTAGAATCTTCTTTGGGCCAACAGGGCTGAAGACTTTGGATTTG
ACCACATTCGCTCGGCTGCTGCTCCAGCTCGCGGCCAGATTCGGGATTCC
AGTGAGTTCTGATCCACATACTCGCTCCACATGCACACCTCACCGCCGAG
AACCTGATCCTTGCTGCGACCAACGGGCATGCCACTGGAGTACACGGTGC
GCCAGTTGTAGTACGATGTGCTGCCCCAGAAGCCGTGATCCAGGTACCAG
GCATTCTTCGTGGACACAATCAGTCGGTAGCCTCGCTGCAATAGCTCCCG
ATTGAGGGCATCCTGTGACTCCACCCATGTCTGGATTATGAACCGCTCCT
TGGGCAGGTAGGTCTCGATGTACCGGGGATTGGTGAGGTGACTGGACCAG
ATGATCACCGACTTCGGCTCCTTGATGCCCGGATACATACGCTCGTTAAT
CTCGTCCCATGCATTGAGGTTCCGCTGATGGAATTGTGACCACAGCCGCA
GGAAGCTCTGCTCGCTGAGATCGTAGCCACGTGCCCGCATCCCATCCCGA
ATCTCGTCGGTGTTATTCCAGCAGGGAAGGAACACCTCGTCGCCGCCCAT
GTGCAGGGTCTCCTCGGGAGCGCCCACCTCGGCTACGTCCTCGAAGATCT
CCTTGAGCACTGCGTACATATGATCGTTCAGGGGATTCAGTTGGCCGCAC
GGTGGCTGTACACAGAATCTCCTCCAGGGCGATTGATTCAGGCACACGGA
CATGTTGCCCAGTCCGGCGGCAGGACCCCATTGCCAGCCATTGCCCGCAT
GCGAGGGTCCATCGATCTCGATCAGTATCCGTATGCCCCGCAGTCG
BS11381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1787-PA | 1869 | Hexo2-RA | 940..1869 | 946..17 | 4625 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexo2-RA | 2140 | CG1787-RA | 1097..2027 | 946..16 | 4640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8711365..8712112 | 946..199 | 3725 | 99.9 | Minus |
X | 23542271 | X | 8712182..8712365 | 199..16 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 11:47:47 has no hits.
BS11381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:22 Download gff for
BS11381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-PA | 940..1869 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:19 Download gff for
BS11381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1787-PA | 940..1869 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:40:53 Download gff for
BS11381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-RA | 1097..2033 | 9..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:14:42 Download gff for
BS11381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-RA | 1097..2033 | 9..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:14:42 Download gff for
BS11381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8711365..8712112 | 199..946 | 99 | -> | Minus |
X | 8712183..8712371 | 9..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:40:53 Download gff for
BS11381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8605398..8606145 | 199..946 | 99 | -> | Minus |
arm_X | 8606216..8606404 | 9..198 | 97 | | Minus |
BS11381.5prime Sequence
941 bp (836 high quality bases) assembled on 2006-04-18
> BS11381.5prime
GAAGTTATCAGTCGACATGCGGTTCAGCGGCTACAATCGTTATCAGTGCT
TTTGCTCTGCTGTTGGATCGCTGCTGCTATTATCCCTATTATCCTTCGCG
GTCGGCGCTGCGCTGACGCGGGCAGATGACGTCGGCAGCGACGCCGACGC
CGGCAGCGCCAGCAGGAAATGGCTGTGCAGCCGGACGGATATCTGCACCG
CGGAGGGCGAGATGGTGGCCGGACTGCAGTACGCGCCGGAGATCTTCGAG
AGCCAGCGGGATTGCCGACTGTCGTGCGGCAAGTACGGAGCCATCTGGCC
CATGCCCACCGGCAAGGAGTGCACCATATCGCACAGGCGGGTACGATTCG
ATCCGTGGAAGGTGCGTTTCCATGTTGTGGCGCCCGGCGAGGCGGCCACC
CAGTTTCTCAGGGAGACGAACCGGCTGTTCGTCTCGAATCTGCTGAAGGA
GTGCATACGAAACTGCACGCTGGAGACCAGCAAGCAGATTCTGGTCAGAT
CCACGGTGGCCAACGAGAGCCTCGTTCTGGACTGGCCCACCGACGAGAGC
TACGCCCTGGTGGTGCGAACCACTGAAACGGCCACCTTTGTGGACATCCA
AGCGACGACGGTGTACGGTGCACGTCATGCCTTCGAGACGCTGAGCAACC
TGGTCACCGGCAGCCTGTCCAATGGCCTGCTGATGGTCACCACGGCCAAC
ATCACCGATCGTCCGGCCTTTTCGCATCGCGGCGTCCTTCTGGATACGGC
CCGTAACTTTGTGCCGCTCAAGTTTATACGCAGCACCTTGGATGCGATGG
CGGCCAGTAAGCTGAATGTGCTCCACTGGCATGTGGTGGACACGCACAGT
TTTCCGCTGGAGATCACCAGGGTGCCGGAGATGCAGCGTTACGGAGCGTA
CTCCTCATCGCAGACGTACTCGCGCCAGGATGCACTGAATC
BS11381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1787-PA | 1869 | Hexo2-RA | 1..925 | 17..941 | 4625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexo2-RA | 2140 | CG1787-RA | 158..1082 | 17..941 | 4625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8710572..8711350 | 163..941 | 3895 | 100 | Plus |
X | 23542271 | X | 8709809..8709958 | 17..166 | 750 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 15:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7964..8012 | 133..181 | 110 | 69.4 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9408..9456 | 133..181 | 110 | 69.4 | Plus |
BS11381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:23 Download gff for
BS11381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-PA | 1..925 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:21 Download gff for
BS11381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1787-PA | 1..925 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:24:23 Download gff for
BS11381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-RA | 158..1082 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:55 Download gff for
BS11381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-RA | 158..1082 | 17..941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:55 Download gff for
BS11381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8709809..8709957 | 17..165 | 100 | -> | Plus |
X | 8710575..8711350 | 166..941 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:24:23 Download gff for
BS11381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8603842..8603990 | 17..165 | 100 | -> | Plus |
arm_X | 8604608..8605383 | 166..941 | 100 | | Plus |
BS11381.complete Sequence
1901 bp assembled on 2007-10-26
GenBank Submission: FJ636844
> BS11381.complete
GAAGTTATCAGTCGACATGCGGTTCAGCGGCTACAATCGTTATCAGTGCT
TTTGCTCTGCTGTTGGATCGCTGCTGCTATTATCCCTATTATCCTTCGCG
GTCGGCGCTGCGCTGACGCGGGCAGATGACGTCGGCAGCGACGCCGACGC
CGGCAGCGCCAGCAGGAAATGGCTGTGCAGCCGGACGGATATCTGCACCG
CGGAGGGCGAGATGGTGGCCGGACTGCAGTACGCGCCGGAGATCTTCGAG
AGCCAGCGGGATTGCCGACTGTCGTGCGGCAAGTACGGAGCCATCTGGCC
CATGCCCACCGGCAAGGAGTGCACCATATCGCACAGGCGGGTACGATTCG
ATCCGTGGAAGGTGCGTTTCCATGTTGTGGCGCCCGGCGAGGCGGCCACC
CAGTTTCTCAGGGAGACGAACCGGCTGTTCGTCTCGAATCTGCTGAAGGA
GTGCATACGAAACTGCACGCTGGAGACCAGCAAGCAGATTCTGGTCAGAT
CCACGGTGGCCAACGAGAGCCTCGTTCTGGACTGGCCCACCGACGAGAGC
TACGCCCTGGTGGTGCGAACCACTGAAACGGCCACCTTTGTGGACATCCA
AGCGACGACGGTGTACGGTGCACGTCATGCCTTCGAGACGCTGAGCAACC
TGGTCACCGGCAGCCTGTCCAATGGCCTGCTGATGGTCACCACGGCCAAC
ATCACCGATCGTCCGGCCTTTTCGCATCGCGGCGTCCTTCTGGATACGGC
CCGTAACTTTGTGCCGCTCAAGTTTATACGCAGCACCTTGGATGCGATGG
CGGCCAGTAAGCTGAATGTGCTCCACTGGCATGTGGTGGACACGCACAGT
TTTCCGCTGGAGATCACCAGGGTGCCGGAGATGCAGCGTTACGGAGCGTA
CTCCTCATCGCAGACGTACTCGCGCCAGGATGCACTGAATCTTGTGAAAT
ATGCCCGACTGCGGGGCATACGGATACTGATCGAGATCGATGGACCCTCG
CATGCGGGCAATGGCTGGCAATGGGGTCCTGCCGCCGGACTGGGCAACAT
GTCCGTGTGCCTGAATCAATCGCCCTGGAGGAGATTCTGTGTACAGCCAC
CGTGCGGCCAACTGAATCCCCTGAACGATCATATGTACGCAGTGCTCAAG
GAGATCTTCGAGGACGTAGCCGAGGTGGGCGCTCCCGAGGAGACCCTGCA
CATGGGCGGCGACGAGGTGTTCCTTCCCTGCTGGAATAACACCGACGAGA
TTCGGGATGGGATGCGGGCACGTGGCTACGATCTCAGCGAGCAGAGCTTC
CTGCGGCTGTGGTCACAATTCCATCAGCGGAACCTCAATGCATGGGACGA
GATTAACGAGCGTATGTATCCGGGCATCAAGGAGCCGAAGTCGGTGATCA
TCTGGTCCAGTCACCTCACCAATCCCCGGTACATCGAGACCTACCTGCCC
AAGGAGCGGTTCATAATCCAGACATGGGTGGAGTCACAGGATGCCCTCAA
TCGGGAGCTATTGCAGCGAGGCTACCGACTGATTGTGTCCACGAAGAATG
CCTGGTACCTGGATCACGGCTTCTGGGGCAGCACATCGTACTACAACTGG
CGCACCGTGTACTCCAGTGGCATGCCCGTTGGTCGCAGCAAGGATCAGGT
TCTCGGCGGTGAGGTGTGCATGTGGAGCGAGTATGTGGATCAGAACTCAC
TGGAATCCCGAATCTGGCCGCGAGCTGGAGCAGCAGCCGAGCGAATGTGG
TCAAATCCAAAGTCTTCAGCCCTGTTGGCCCAAAGAAGATTCTACCGCTA
CCGGGAGCGACTCCTGGCGCGCGGAATCCATGCGGATGCAGTTATTCCGC
ACTGGTGCGTCCTCCACGAAGGACAGTGCCTCTAAAAGCTTTCTAGACCA
T
BS11381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexo2-RA | 1869 | CG1787-PA | 1..1869 | 17..1885 | 9330 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexo2-RA | 2140 | CG1787-RA | 158..2027 | 17..1886 | 9335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8710572..8712112 | 163..1703 | 7690 | 99.9 | Plus |
X | 23542271 | X | 8712182..8712365 | 1703..1886 | 920 | 100 | Plus |
X | 23542271 | X | 8709809..8709958 | 17..166 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:09:29 has no hits.
BS11381.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:01 Download gff for
BS11381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-RA | 1..1869 | 17..1885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:50 Download gff for
BS11381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-RA | 156..2031 | 17..1893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:25:26 Download gff for
BS11381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-RA | 158..2024 | 17..1883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:23 Download gff for
BS11381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-RA | 156..2022 | 17..1883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:02 Download gff for
BS11381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexo2-RA | 158..2024 | 17..1883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:02 Download gff for
BS11381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8709809..8709957 | 17..165 | 100 | -> | Plus |
X | 8710575..8712112 | 166..1703 | 99 | -> | Plus |
X | 8712183..8712362 | 1704..1883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:25:26 Download gff for
BS11381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8606216..8606395 | 1704..1883 | 100 | | Plus |
arm_X | 8603842..8603990 | 17..165 | 100 | -> | Plus |
arm_X | 8604608..8606145 | 166..1703 | 99 | -> | Plus |
BS11381.pep Sequence
Translation from 16 to 1884
> BS11381.pep
MRFSGYNRYQCFCSAVGSLLLLSLLSFAVGAALTRADDVGSDADAGSASR
KWLCSRTDICTAEGEMVAGLQYAPEIFESQRDCRLSCGKYGAIWPMPTGK
ECTISHRRVRFDPWKVRFHVVAPGEAATQFLRETNRLFVSNLLKECIRNC
TLETSKQILVRSTVANESLVLDWPTDESYALVVRTTETATFVDIQATTVY
GARHAFETLSNLVTGSLSNGLLMVTTANITDRPAFSHRGVLLDTARNFVP
LKFIRSTLDAMAASKLNVLHWHVVDTHSFPLEITRVPEMQRYGAYSSSQT
YSRQDALNLVKYARLRGIRILIEIDGPSHAGNGWQWGPAAGLGNMSVCLN
QSPWRRFCVQPPCGQLNPLNDHMYAVLKEIFEDVAEVGAPEETLHMGGDE
VFLPCWNNTDEIRDGMRARGYDLSEQSFLRLWSQFHQRNLNAWDEINERM
YPGIKEPKSVIIWSSHLTNPRYIETYLPKERFIIQTWVESQDALNRELLQ
RGYRLIVSTKNAWYLDHGFWGSTSYYNWRTVYSSGMPVGRSKDQVLGGEV
CMWSEYVDQNSLESRIWPRAGAAAERMWSNPKSSALLAQRRFYRYRERLL
ARGIHADAVIPHWCVLHEGQCL*
BS11381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexo2-PA | 622 | CG1787-PA | 1..622 | 1..622 | 3329 | 100 | Plus |
Hexo1-PF | 606 | CG1318-PF | 6..597 | 14..621 | 972 | 35.7 | Plus |
Hexo1-PE | 606 | CG1318-PE | 6..597 | 14..621 | 972 | 35.7 | Plus |
Hexo1-PD | 606 | CG1318-PD | 6..597 | 14..621 | 972 | 35.7 | Plus |
Hexo1-PA | 622 | CG1318-PA | 6..597 | 14..621 | 972 | 35.7 | Plus |