Clone BS11381 Report

Search the DGRC for BS11381

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptHexo2-RA
Protein status:BS11381.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11381.3prime Sequence

946 bp (776 high quality bases) assembled on 2006-04-18

> BS11381.3prime
ATGGTCTAGAAAGCTTTTAGAGGCACTGTCCTTCGTGGAGGACGCACCAG
TGCGGAATAACTGCATCCGCATGGATTCCGCGCGCCAGGAGTCGCTCCCG
GTAGCGGTAGAATCTTCTTTGGGCCAACAGGGCTGAAGACTTTGGATTTG
ACCACATTCGCTCGGCTGCTGCTCCAGCTCGCGGCCAGATTCGGGATTCC
AGTGAGTTCTGATCCACATACTCGCTCCACATGCACACCTCACCGCCGAG
AACCTGATCCTTGCTGCGACCAACGGGCATGCCACTGGAGTACACGGTGC
GCCAGTTGTAGTACGATGTGCTGCCCCAGAAGCCGTGATCCAGGTACCAG
GCATTCTTCGTGGACACAATCAGTCGGTAGCCTCGCTGCAATAGCTCCCG
ATTGAGGGCATCCTGTGACTCCACCCATGTCTGGATTATGAACCGCTCCT
TGGGCAGGTAGGTCTCGATGTACCGGGGATTGGTGAGGTGACTGGACCAG
ATGATCACCGACTTCGGCTCCTTGATGCCCGGATACATACGCTCGTTAAT
CTCGTCCCATGCATTGAGGTTCCGCTGATGGAATTGTGACCACAGCCGCA
GGAAGCTCTGCTCGCTGAGATCGTAGCCACGTGCCCGCATCCCATCCCGA
ATCTCGTCGGTGTTATTCCAGCAGGGAAGGAACACCTCGTCGCCGCCCAT
GTGCAGGGTCTCCTCGGGAGCGCCCACCTCGGCTACGTCCTCGAAGATCT
CCTTGAGCACTGCGTACATATGATCGTTCAGGGGATTCAGTTGGCCGCAC
GGTGGCTGTACACAGAATCTCCTCCAGGGCGATTGATTCAGGCACACGGA
CATGTTGCCCAGTCCGGCGGCAGGACCCCATTGCCAGCCATTGCCCGCAT
GCGAGGGTCCATCGATCTCGATCAGTATCCGTATGCCCCGCAGTCG

BS11381.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1787-PA 1869 Hexo2-RA 940..1869 946..17 4625 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-RA 2140 CG1787-RA 1097..2027 946..16 4640 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8711365..8712112 946..199 3725 99.9 Minus
X 23542271 X 8712182..8712365 199..16 920 100 Minus
Blast to na_te.dros performed on 2015-02-01 11:47:47 has no hits.

BS11381.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:22 Download gff for BS11381.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-PA 940..1869 17..946 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:19 Download gff for BS11381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1787-PA 940..1869 17..946 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:40:53 Download gff for BS11381.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1097..2033 9..946 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:14:42 Download gff for BS11381.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1097..2033 9..946 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:14:42 Download gff for BS11381.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8711365..8712112 199..946 99 -> Minus
X 8712183..8712371 9..198 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:40:53 Download gff for BS11381.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8605398..8606145 199..946 99 -> Minus
arm_X 8606216..8606404 9..198 97   Minus

BS11381.5prime Sequence

941 bp (836 high quality bases) assembled on 2006-04-18

> BS11381.5prime
GAAGTTATCAGTCGACATGCGGTTCAGCGGCTACAATCGTTATCAGTGCT
TTTGCTCTGCTGTTGGATCGCTGCTGCTATTATCCCTATTATCCTTCGCG
GTCGGCGCTGCGCTGACGCGGGCAGATGACGTCGGCAGCGACGCCGACGC
CGGCAGCGCCAGCAGGAAATGGCTGTGCAGCCGGACGGATATCTGCACCG
CGGAGGGCGAGATGGTGGCCGGACTGCAGTACGCGCCGGAGATCTTCGAG
AGCCAGCGGGATTGCCGACTGTCGTGCGGCAAGTACGGAGCCATCTGGCC
CATGCCCACCGGCAAGGAGTGCACCATATCGCACAGGCGGGTACGATTCG
ATCCGTGGAAGGTGCGTTTCCATGTTGTGGCGCCCGGCGAGGCGGCCACC
CAGTTTCTCAGGGAGACGAACCGGCTGTTCGTCTCGAATCTGCTGAAGGA
GTGCATACGAAACTGCACGCTGGAGACCAGCAAGCAGATTCTGGTCAGAT
CCACGGTGGCCAACGAGAGCCTCGTTCTGGACTGGCCCACCGACGAGAGC
TACGCCCTGGTGGTGCGAACCACTGAAACGGCCACCTTTGTGGACATCCA
AGCGACGACGGTGTACGGTGCACGTCATGCCTTCGAGACGCTGAGCAACC
TGGTCACCGGCAGCCTGTCCAATGGCCTGCTGATGGTCACCACGGCCAAC
ATCACCGATCGTCCGGCCTTTTCGCATCGCGGCGTCCTTCTGGATACGGC
CCGTAACTTTGTGCCGCTCAAGTTTATACGCAGCACCTTGGATGCGATGG
CGGCCAGTAAGCTGAATGTGCTCCACTGGCATGTGGTGGACACGCACAGT
TTTCCGCTGGAGATCACCAGGGTGCCGGAGATGCAGCGTTACGGAGCGTA
CTCCTCATCGCAGACGTACTCGCGCCAGGATGCACTGAATC

BS11381.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1787-PA 1869 Hexo2-RA 1..925 17..941 4625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-RA 2140 CG1787-RA 158..1082 17..941 4625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8710572..8711350 163..941 3895 100 Plus
X 23542271 X 8709809..8709958 17..166 750 100 Plus
Blast to na_te.dros performed 2015-02-11 15:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7964..8012 133..181 110 69.4 Plus
TART-C 11124 TART-C TARTC 11124bp 9408..9456 133..181 110 69.4 Plus

BS11381.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:23 Download gff for BS11381.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-PA 1..925 17..941 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:21 Download gff for BS11381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1787-PA 1..925 17..941 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:24:23 Download gff for BS11381.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 158..1082 17..941 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:55 Download gff for BS11381.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 158..1082 17..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:55 Download gff for BS11381.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8709809..8709957 17..165 100 -> Plus
X 8710575..8711350 166..941 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:24:23 Download gff for BS11381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8603842..8603990 17..165 100 -> Plus
arm_X 8604608..8605383 166..941 100   Plus

BS11381.complete Sequence

1901 bp assembled on 2007-10-26

GenBank Submission: FJ636844

> BS11381.complete
GAAGTTATCAGTCGACATGCGGTTCAGCGGCTACAATCGTTATCAGTGCT
TTTGCTCTGCTGTTGGATCGCTGCTGCTATTATCCCTATTATCCTTCGCG
GTCGGCGCTGCGCTGACGCGGGCAGATGACGTCGGCAGCGACGCCGACGC
CGGCAGCGCCAGCAGGAAATGGCTGTGCAGCCGGACGGATATCTGCACCG
CGGAGGGCGAGATGGTGGCCGGACTGCAGTACGCGCCGGAGATCTTCGAG
AGCCAGCGGGATTGCCGACTGTCGTGCGGCAAGTACGGAGCCATCTGGCC
CATGCCCACCGGCAAGGAGTGCACCATATCGCACAGGCGGGTACGATTCG
ATCCGTGGAAGGTGCGTTTCCATGTTGTGGCGCCCGGCGAGGCGGCCACC
CAGTTTCTCAGGGAGACGAACCGGCTGTTCGTCTCGAATCTGCTGAAGGA
GTGCATACGAAACTGCACGCTGGAGACCAGCAAGCAGATTCTGGTCAGAT
CCACGGTGGCCAACGAGAGCCTCGTTCTGGACTGGCCCACCGACGAGAGC
TACGCCCTGGTGGTGCGAACCACTGAAACGGCCACCTTTGTGGACATCCA
AGCGACGACGGTGTACGGTGCACGTCATGCCTTCGAGACGCTGAGCAACC
TGGTCACCGGCAGCCTGTCCAATGGCCTGCTGATGGTCACCACGGCCAAC
ATCACCGATCGTCCGGCCTTTTCGCATCGCGGCGTCCTTCTGGATACGGC
CCGTAACTTTGTGCCGCTCAAGTTTATACGCAGCACCTTGGATGCGATGG
CGGCCAGTAAGCTGAATGTGCTCCACTGGCATGTGGTGGACACGCACAGT
TTTCCGCTGGAGATCACCAGGGTGCCGGAGATGCAGCGTTACGGAGCGTA
CTCCTCATCGCAGACGTACTCGCGCCAGGATGCACTGAATCTTGTGAAAT
ATGCCCGACTGCGGGGCATACGGATACTGATCGAGATCGATGGACCCTCG
CATGCGGGCAATGGCTGGCAATGGGGTCCTGCCGCCGGACTGGGCAACAT
GTCCGTGTGCCTGAATCAATCGCCCTGGAGGAGATTCTGTGTACAGCCAC
CGTGCGGCCAACTGAATCCCCTGAACGATCATATGTACGCAGTGCTCAAG
GAGATCTTCGAGGACGTAGCCGAGGTGGGCGCTCCCGAGGAGACCCTGCA
CATGGGCGGCGACGAGGTGTTCCTTCCCTGCTGGAATAACACCGACGAGA
TTCGGGATGGGATGCGGGCACGTGGCTACGATCTCAGCGAGCAGAGCTTC
CTGCGGCTGTGGTCACAATTCCATCAGCGGAACCTCAATGCATGGGACGA
GATTAACGAGCGTATGTATCCGGGCATCAAGGAGCCGAAGTCGGTGATCA
TCTGGTCCAGTCACCTCACCAATCCCCGGTACATCGAGACCTACCTGCCC
AAGGAGCGGTTCATAATCCAGACATGGGTGGAGTCACAGGATGCCCTCAA
TCGGGAGCTATTGCAGCGAGGCTACCGACTGATTGTGTCCACGAAGAATG
CCTGGTACCTGGATCACGGCTTCTGGGGCAGCACATCGTACTACAACTGG
CGCACCGTGTACTCCAGTGGCATGCCCGTTGGTCGCAGCAAGGATCAGGT
TCTCGGCGGTGAGGTGTGCATGTGGAGCGAGTATGTGGATCAGAACTCAC
TGGAATCCCGAATCTGGCCGCGAGCTGGAGCAGCAGCCGAGCGAATGTGG
TCAAATCCAAAGTCTTCAGCCCTGTTGGCCCAAAGAAGATTCTACCGCTA
CCGGGAGCGACTCCTGGCGCGCGGAATCCATGCGGATGCAGTTATTCCGC
ACTGGTGCGTCCTCCACGAAGGACAGTGCCTCTAAAAGCTTTCTAGACCA
T

BS11381.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-RA 1869 CG1787-PA 1..1869 17..1885 9330 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-RA 2140 CG1787-RA 158..2027 17..1886 9335 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8710572..8712112 163..1703 7690 99.9 Plus
X 23542271 X 8712182..8712365 1703..1886 920 100 Plus
X 23542271 X 8709809..8709958 17..166 750 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:09:29 has no hits.

BS11381.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:01 Download gff for BS11381.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1..1869 17..1885 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:50 Download gff for BS11381.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 156..2031 17..1893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:25:26 Download gff for BS11381.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 158..2024 17..1883 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:23 Download gff for BS11381.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 156..2022 17..1883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:02 Download gff for BS11381.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 158..2024 17..1883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:02 Download gff for BS11381.complete
Subject Subject Range Query Range Percent Splice Strand
X 8709809..8709957 17..165 100 -> Plus
X 8710575..8712112 166..1703 99 -> Plus
X 8712183..8712362 1704..1883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:25:26 Download gff for BS11381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8606216..8606395 1704..1883 100   Plus
arm_X 8603842..8603990 17..165 100 -> Plus
arm_X 8604608..8606145 166..1703 99 -> Plus

BS11381.pep Sequence

Translation from 16 to 1884

> BS11381.pep
MRFSGYNRYQCFCSAVGSLLLLSLLSFAVGAALTRADDVGSDADAGSASR
KWLCSRTDICTAEGEMVAGLQYAPEIFESQRDCRLSCGKYGAIWPMPTGK
ECTISHRRVRFDPWKVRFHVVAPGEAATQFLRETNRLFVSNLLKECIRNC
TLETSKQILVRSTVANESLVLDWPTDESYALVVRTTETATFVDIQATTVY
GARHAFETLSNLVTGSLSNGLLMVTTANITDRPAFSHRGVLLDTARNFVP
LKFIRSTLDAMAASKLNVLHWHVVDTHSFPLEITRVPEMQRYGAYSSSQT
YSRQDALNLVKYARLRGIRILIEIDGPSHAGNGWQWGPAAGLGNMSVCLN
QSPWRRFCVQPPCGQLNPLNDHMYAVLKEIFEDVAEVGAPEETLHMGGDE
VFLPCWNNTDEIRDGMRARGYDLSEQSFLRLWSQFHQRNLNAWDEINERM
YPGIKEPKSVIIWSSHLTNPRYIETYLPKERFIIQTWVESQDALNRELLQ
RGYRLIVSTKNAWYLDHGFWGSTSYYNWRTVYSSGMPVGRSKDQVLGGEV
CMWSEYVDQNSLESRIWPRAGAAAERMWSNPKSSALLAQRRFYRYRERLL
ARGIHADAVIPHWCVLHEGQCL*

BS11381.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-PA 622 CG1787-PA 1..622 1..622 3329 100 Plus
Hexo1-PF 606 CG1318-PF 6..597 14..621 972 35.7 Plus
Hexo1-PE 606 CG1318-PE 6..597 14..621 972 35.7 Plus
Hexo1-PD 606 CG1318-PD 6..597 14..621 972 35.7 Plus
Hexo1-PA 622 CG1318-PA 6..597 14..621 972 35.7 Plus