Clone Sequence Records
BS11382.5prime Sequence
498 bp (497 high quality bases) assembled on 2006-04-18
> BS11382.5prime
GAAGTTATCAGTCGACATGGCTGATGTTCCAAAGCGTGAAGTTGAAAATG
TCGAATTCGTTTTCGAAGTCATGGGCTCCCCCGGTGAGGGCATTGATGCC
GTCGACCTAGGTGATGCCCTCCGCGCTCTGAACTTGAACCCCACATTGGC
GCTGATCGAGAAATTGGGCGGCACCAAGAAGCGCAACGAGAAGAAGATCA
AGCTGGATGAGTTCCTGCCCATCTACTCACAGGTCAAGAAGGAGAAGGAG
CAGGGCTGCTACGAGGACTTCATTGAGTGCTTGAAGCTCTACGACAAGGA
GGAGAACGGCACCATGCTGCTGGCTGAGCTGCAGCACGCCCTGCTGGCGC
TTGGTGAGAGCTTGGATGACGAGCAGGTGGAGACCCTGTTCGCTGACTGC
ATGGATCCCGAGGATGATGAAGGATTTATCCCCTACTCTCAGTTCGTCCA
GCGCCTGATGAGCGATCCTGTCGTCTTCGACTAAAAGCTTTCTAGACC
BS11382.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5596-PB | 468 | Mlc1-RB | 1..468 | 17..484 | 2315 | 99.7 | Plus |
CG5596-PA | 468 | Mlc1-RA | 1..424 | 17..440 | 2095 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-RD | 1414 | CG5596-RD | 66..534 | 17..485 | 2330 | 99.8 | Plus |
Mlc1-RB | 929 | CG5596-RB | 66..534 | 17..485 | 2330 | 99.8 | Plus |
Mlc1-RA | 882 | CG5596-RA | 66..489 | 17..440 | 2105 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27658611..27658921 | 358..48 | 1540 | 99.7 | Minus |
3R | 32079331 | 3R | 27658469..27658556 | 440..353 | 440 | 100 | Minus |
3R | 32079331 | 3R | 27658069..27658113 | 485..441 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 07:18:10 has no hits.
BS11382.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:25 Download gff for
BS11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-PB | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:24 Download gff for
BS11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5596-PB | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:30:44 Download gff for
BS11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 58..541 | 9..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:48:39 Download gff for
BS11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 58..541 | 9..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:48:39 Download gff for
BS11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27658069..27658113 | 441..485 | 100 | <- | Minus |
3R | 27658469..27658555 | 354..440 | 100 | <- | Minus |
3R | 27658616..27658921 | 48..353 | 99 | <- | Minus |
3R | 27659929..27659967 | 8..47 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:30:44 Download gff for
BS11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23483791..23483835 | 441..485 | 100 | <- | Minus |
arm_3R | 23484191..23484277 | 354..440 | 100 | <- | Minus |
arm_3R | 23484338..23484643 | 48..353 | 99 | <- | Minus |
arm_3R | 23485651..23485689 | 8..47 | 92 | | Minus |
BS11382.3prime Sequence
498 bp (497 high quality bases) assembled on 2006-04-18
> BS11382.3prime
ATGGTCTAGAAAGCTTTTAGTCGAAGACGACAGGATCGCTCATCAGGCGC
TGGACGAACTGAGAGTAGGGGATAAATCCTTCATCATCCTCGGGATCCAT
GCAGTCAGCGAACAGGGTCTCCACCTGCTCGTCATCCAAGCTCTCACCAA
GCGCCAGCAGGGCGTGCTGCAGCTCAGCCAGCAGCATGGTGCCGTTCTCC
TCCTTGTCGTAGAGCTTCAAGCACTCAATGAAGTCCTCGTAGCAGCCCTG
CTCCTTCTCCTTCTTGACCTGTGAGTAGATGGGCAGGAACTCATCCAGCT
TGATCTTCTTCTCGTTGCGCTTCTTGGTGCCGCCCAATTTCTCGATCAGC
GCCAATGTGGGGTTCAAGTTCAGAGCGCGGAGGGCATCACCTAGGTCGAC
GGCATCAATGCCCTCACCGGGGGAGCCCATGACTTCGAAAACGAATTCGA
CATTTTCAACTTCACGCTTTGGAACATCAGCCATGTCGACTGATAACT
BS11382.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5596-PB | 468 | Mlc1-RB | 1..468 | 484..17 | 2315 | 99.7 | Minus |
CG5596-PA | 468 | Mlc1-RA | 1..424 | 484..61 | 2095 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-RD | 1414 | CG5596-RD | 66..534 | 484..16 | 2330 | 99.8 | Minus |
Mlc1-RB | 929 | CG5596-RB | 66..534 | 484..16 | 2330 | 99.8 | Minus |
Mlc1-RA | 882 | CG5596-RA | 66..489 | 484..61 | 2105 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27658611..27658921 | 143..453 | 1540 | 99.7 | Plus |
3R | 32079331 | 3R | 27658469..27658556 | 61..148 | 440 | 100 | Plus |
3R | 32079331 | 3R | 27658069..27658113 | 16..60 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:46:34 has no hits.
BS11382.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:24 Download gff for
BS11382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-PB | 1..468 | 17..484 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:22 Download gff for
BS11382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5596-PB | 1..468 | 17..484 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 05:06:52 Download gff for
BS11382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 58..541 | 9..492 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:38 Download gff for
BS11382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 58..541 | 9..492 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:38 Download gff for
BS11382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27658069..27658113 | 16..60 | 100 | <- | Plus |
3R | 27658469..27658555 | 61..147 | 100 | <- | Plus |
3R | 27658616..27658921 | 148..453 | 99 | <- | Plus |
3R | 27659929..27659967 | 454..493 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 05:06:52 Download gff for
BS11382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23485651..23485689 | 454..493 | 92 | | Plus |
arm_3R | 23483791..23483835 | 16..60 | 100 | <- | Plus |
arm_3R | 23484191..23484277 | 61..147 | 100 | <- | Plus |
arm_3R | 23484338..23484643 | 148..453 | 99 | <- | Plus |
BS11382.complete Sequence
500 bp assembled on 2006-11-01
GenBank Submission: FJ636845
> BS11382.complete
GAAGTTATCAGTCGACATGGCTGATGTTCCAAAGCGTGAAGTTGAAAATG
TCGAATTCGTTTTCGAAGTCATGGGCTCCCCCGGTGAGGGCATTGATGCC
GTCGACCTAGGTGATGCCCTCCGCGCTCTGAACTTGAACCCCACATTGGC
GCTGATCGAGAAATTGGGCGGCACCAAGAAGCGCAACGAGAAGAAGATCA
AGCTGGATGAGTTCCTGCCCATCTACTCACAGGTCAAGAAGGAGAAGGAG
CAGGGCTGCTACGAGGACTTCATTGAGTGCTTGAAGCTCTACGACAAGGA
GGAGAACGGCACCATGCTGCTGGCTGAGCTGCAGCACGCCCTGCTGGCGC
TTGGTGAGAGCTTGGATGACGAGCAGGTGGAGACCCTGTTCGCTGACTGC
ATGGATCCCGAGGATGATGAAGGATTTATCCCCTACTCTCAGTTCGTCCA
GCGCCTGATGAGCGATCCTGTCGTCTTCGACTAAAAGCTTTCTAGACCAT
BS11382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-RD | 468 | CG5596-PD | 1..468 | 17..484 | 2325 | 99.8 | Plus |
Mlc1-RB | 468 | CG5596-PB | 1..468 | 17..484 | 2325 | 99.8 | Plus |
Mlc1-RA | 468 | CG5596-PA | 1..424 | 17..440 | 2105 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-RD | 1414 | CG5596-RD | 66..534 | 17..485 | 2330 | 99.8 | Plus |
Mlc1-RB | 929 | CG5596-RB | 66..534 | 17..485 | 2330 | 99.8 | Plus |
Mlc1-RA | 882 | CG5596-RA | 66..489 | 17..440 | 2105 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27658611..27658921 | 358..48 | 1540 | 99.7 | Minus |
3R | 32079331 | 3R | 27658469..27658556 | 440..353 | 440 | 100 | Minus |
3R | 32079331 | 3R | 27658069..27658113 | 485..441 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:38:28 has no hits.
BS11382.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:30 Download gff for
BS11382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:42 Download gff for
BS11382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 80..563 | 9..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:55 Download gff for
BS11382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 66..531 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:30 Download gff for
BS11382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 80..563 | 9..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:51 Download gff for
BS11382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 66..531 | 17..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:51 Download gff for
BS11382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27658072..27658113 | 441..482 | 100 | <- | Minus |
3R | 27658469..27658555 | 354..440 | 100 | <- | Minus |
3R | 27658616..27658921 | 48..353 | 99 | <- | Minus |
3R | 27659929..27659958 | 17..47 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:55 Download gff for
BS11382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23483794..23483835 | 441..482 | 100 | <- | Minus |
arm_3R | 23484191..23484277 | 354..440 | 100 | <- | Minus |
arm_3R | 23484338..23484643 | 48..353 | 99 | <- | Minus |
arm_3R | 23485651..23485680 | 17..47 | 96 | | Minus |
BS11382.pep Sequence
Translation from 16 to 483
> BS11382.pep
MADVPKREVENVEFVFEVMGSPGEGIDAVDLGDALRALNLNPTLALIEKL
GGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTM
LLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFVQRLMSD
PVVFD*
BS11382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-PD | 155 | CG5596-PD | 1..155 | 1..155 | 799 | 100 | Plus |
Mlc1-PB | 155 | CG5596-PB | 1..155 | 1..155 | 799 | 100 | Plus |
Mlc1-PA | 155 | CG5596-PA | 1..151 | 1..151 | 744 | 95.4 | Plus |
Mlc-c-PA | 147 | CG3201-PA | 1..146 | 1..149 | 226 | 37.3 | Plus |
Mlc-c-PB | 153 | CG3201-PB | 15..152 | 9..149 | 226 | 38.7 | Plus |