Clone BS11382 Report

Search the DGRC for BS11382

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptMlc1-RB
Protein status:BS11382.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11382.5prime Sequence

498 bp (497 high quality bases) assembled on 2006-04-18

> BS11382.5prime
GAAGTTATCAGTCGACATGGCTGATGTTCCAAAGCGTGAAGTTGAAAATG
TCGAATTCGTTTTCGAAGTCATGGGCTCCCCCGGTGAGGGCATTGATGCC
GTCGACCTAGGTGATGCCCTCCGCGCTCTGAACTTGAACCCCACATTGGC
GCTGATCGAGAAATTGGGCGGCACCAAGAAGCGCAACGAGAAGAAGATCA
AGCTGGATGAGTTCCTGCCCATCTACTCACAGGTCAAGAAGGAGAAGGAG
CAGGGCTGCTACGAGGACTTCATTGAGTGCTTGAAGCTCTACGACAAGGA
GGAGAACGGCACCATGCTGCTGGCTGAGCTGCAGCACGCCCTGCTGGCGC
TTGGTGAGAGCTTGGATGACGAGCAGGTGGAGACCCTGTTCGCTGACTGC
ATGGATCCCGAGGATGATGAAGGATTTATCCCCTACTCTCAGTTCGTCCA
GCGCCTGATGAGCGATCCTGTCGTCTTCGACTAAAAGCTTTCTAGACC

BS11382.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5596-PB 468 Mlc1-RB 1..468 17..484 2315 99.7 Plus
CG5596-PA 468 Mlc1-RA 1..424 17..440 2095 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-RD 1414 CG5596-RD 66..534 17..485 2330 99.8 Plus
Mlc1-RB 929 CG5596-RB 66..534 17..485 2330 99.8 Plus
Mlc1-RA 882 CG5596-RA 66..489 17..440 2105 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27658611..27658921 358..48 1540 99.7 Minus
3R 32079331 3R 27658469..27658556 440..353 440 100 Minus
3R 32079331 3R 27658069..27658113 485..441 225 100 Minus
Blast to na_te.dros performed on 2015-02-10 07:18:10 has no hits.

BS11382.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:25 Download gff for BS11382.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-PB 1..468 17..484 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:24 Download gff for BS11382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5596-PB 1..468 17..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:30:44 Download gff for BS11382.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 58..541 9..492 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:48:39 Download gff for BS11382.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 58..541 9..492 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:48:39 Download gff for BS11382.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27658069..27658113 441..485 100 <- Minus
3R 27658469..27658555 354..440 100 <- Minus
3R 27658616..27658921 48..353 99 <- Minus
3R 27659929..27659967 8..47 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:30:44 Download gff for BS11382.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23483791..23483835 441..485 100 <- Minus
arm_3R 23484191..23484277 354..440 100 <- Minus
arm_3R 23484338..23484643 48..353 99 <- Minus
arm_3R 23485651..23485689 8..47 92   Minus

BS11382.3prime Sequence

498 bp (497 high quality bases) assembled on 2006-04-18

> BS11382.3prime
ATGGTCTAGAAAGCTTTTAGTCGAAGACGACAGGATCGCTCATCAGGCGC
TGGACGAACTGAGAGTAGGGGATAAATCCTTCATCATCCTCGGGATCCAT
GCAGTCAGCGAACAGGGTCTCCACCTGCTCGTCATCCAAGCTCTCACCAA
GCGCCAGCAGGGCGTGCTGCAGCTCAGCCAGCAGCATGGTGCCGTTCTCC
TCCTTGTCGTAGAGCTTCAAGCACTCAATGAAGTCCTCGTAGCAGCCCTG
CTCCTTCTCCTTCTTGACCTGTGAGTAGATGGGCAGGAACTCATCCAGCT
TGATCTTCTTCTCGTTGCGCTTCTTGGTGCCGCCCAATTTCTCGATCAGC
GCCAATGTGGGGTTCAAGTTCAGAGCGCGGAGGGCATCACCTAGGTCGAC
GGCATCAATGCCCTCACCGGGGGAGCCCATGACTTCGAAAACGAATTCGA
CATTTTCAACTTCACGCTTTGGAACATCAGCCATGTCGACTGATAACT

BS11382.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5596-PB 468 Mlc1-RB 1..468 484..17 2315 99.7 Minus
CG5596-PA 468 Mlc1-RA 1..424 484..61 2095 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-RD 1414 CG5596-RD 66..534 484..16 2330 99.8 Minus
Mlc1-RB 929 CG5596-RB 66..534 484..16 2330 99.8 Minus
Mlc1-RA 882 CG5596-RA 66..489 484..61 2105 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27658611..27658921 143..453 1540 99.7 Plus
3R 32079331 3R 27658469..27658556 61..148 440 100 Plus
3R 32079331 3R 27658069..27658113 16..60 225 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:46:34 has no hits.

BS11382.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:24 Download gff for BS11382.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-PB 1..468 17..484 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:22 Download gff for BS11382.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5596-PB 1..468 17..484 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 05:06:52 Download gff for BS11382.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 58..541 9..492 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:38 Download gff for BS11382.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 58..541 9..492 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:38 Download gff for BS11382.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27658069..27658113 16..60 100 <- Plus
3R 27658469..27658555 61..147 100 <- Plus
3R 27658616..27658921 148..453 99 <- Plus
3R 27659929..27659967 454..493 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 05:06:52 Download gff for BS11382.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23485651..23485689 454..493 92   Plus
arm_3R 23483791..23483835 16..60 100 <- Plus
arm_3R 23484191..23484277 61..147 100 <- Plus
arm_3R 23484338..23484643 148..453 99 <- Plus

BS11382.complete Sequence

500 bp assembled on 2006-11-01

GenBank Submission: FJ636845

> BS11382.complete
GAAGTTATCAGTCGACATGGCTGATGTTCCAAAGCGTGAAGTTGAAAATG
TCGAATTCGTTTTCGAAGTCATGGGCTCCCCCGGTGAGGGCATTGATGCC
GTCGACCTAGGTGATGCCCTCCGCGCTCTGAACTTGAACCCCACATTGGC
GCTGATCGAGAAATTGGGCGGCACCAAGAAGCGCAACGAGAAGAAGATCA
AGCTGGATGAGTTCCTGCCCATCTACTCACAGGTCAAGAAGGAGAAGGAG
CAGGGCTGCTACGAGGACTTCATTGAGTGCTTGAAGCTCTACGACAAGGA
GGAGAACGGCACCATGCTGCTGGCTGAGCTGCAGCACGCCCTGCTGGCGC
TTGGTGAGAGCTTGGATGACGAGCAGGTGGAGACCCTGTTCGCTGACTGC
ATGGATCCCGAGGATGATGAAGGATTTATCCCCTACTCTCAGTTCGTCCA
GCGCCTGATGAGCGATCCTGTCGTCTTCGACTAAAAGCTTTCTAGACCAT

BS11382.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-RD 468 CG5596-PD 1..468 17..484 2325 99.8 Plus
Mlc1-RB 468 CG5596-PB 1..468 17..484 2325 99.8 Plus
Mlc1-RA 468 CG5596-PA 1..424 17..440 2105 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-RD 1414 CG5596-RD 66..534 17..485 2330 99.8 Plus
Mlc1-RB 929 CG5596-RB 66..534 17..485 2330 99.8 Plus
Mlc1-RA 882 CG5596-RA 66..489 17..440 2105 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27658611..27658921 358..48 1540 99.7 Minus
3R 32079331 3R 27658469..27658556 440..353 440 100 Minus
3R 32079331 3R 27658069..27658113 485..441 225 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:38:28 has no hits.

BS11382.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:30 Download gff for BS11382.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 1..468 17..484 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:42 Download gff for BS11382.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 80..563 9..492 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:55 Download gff for BS11382.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 66..531 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:30 Download gff for BS11382.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 80..563 9..492 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:51 Download gff for BS11382.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 66..531 17..482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:51 Download gff for BS11382.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27658072..27658113 441..482 100 <- Minus
3R 27658469..27658555 354..440 100 <- Minus
3R 27658616..27658921 48..353 99 <- Minus
3R 27659929..27659958 17..47 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:55 Download gff for BS11382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23483794..23483835 441..482 100 <- Minus
arm_3R 23484191..23484277 354..440 100 <- Minus
arm_3R 23484338..23484643 48..353 99 <- Minus
arm_3R 23485651..23485680 17..47 96   Minus

BS11382.pep Sequence

Translation from 16 to 483

> BS11382.pep
MADVPKREVENVEFVFEVMGSPGEGIDAVDLGDALRALNLNPTLALIEKL
GGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTM
LLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFVQRLMSD
PVVFD*

BS11382.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-PD 155 CG5596-PD 1..155 1..155 799 100 Plus
Mlc1-PB 155 CG5596-PB 1..155 1..155 799 100 Plus
Mlc1-PA 155 CG5596-PA 1..151 1..151 744 95.4 Plus
Mlc-c-PA 147 CG3201-PA 1..146 1..149 226 37.3 Plus
Mlc-c-PB 153 CG3201-PB 15..152 9..149 226 38.7 Plus