Clone Sequence Records
BS11385.3prime Sequence
916 bp (834 high quality bases) assembled on 2006-04-18
> BS11385.3prime
ATGGTCTAGAAAGCTTTCACTTAAAGACTATGGTGTCCAGCATGGCGCCC
AGGCACTGCACAATATTGTTCTGCATAACCTTGTCCACCTTCTCCTCCAA
ATGCCGCTTGGGGTCCTGCTTGCCCACGTTCTTGATCGCCAGCTGCTCGG
GCGTCATTTTCTCCTCGTCCTCCAGTGACTTGTTGTAGTTCTTGGCGAGA
TCCAGCATCTCGGCCACGGTGTCCTCGTTGATGGAACAGTGCTCATTGTA
GTCGGACAACGTGAGGCCGTCCTTCCACGACTTTTTGTGCAGATTGAGAA
GCATCTTCTGCTCCAGTTCGTTCTTGCGGTAGTTTATGCTAATCGAGTAG
TAGTGGCGATTGAGCCCGTGGATCAGGGCCTGTACGGAGGGCTTTTGCAG
ATGACCCAAATTGGAGGTTGTCTGCCGGGGCTCCTGTCCCAGCACAAGCA
TGTTGGGATTGATCAGGCGGAAGGCATCGATGACCACTTTGCCCTTGACA
GACTGAATGGGATCGACGACGACGGCTACGGCTCGCTCCGACAGCGCCTC
GAAGGATTGCTGCGTATTGATGTCCACGCCGGACAGCCAGCAGCCGAAAC
CGGGATGCGAGTGATACCAGCCGACGACCATTTCGGGTCGACCCGTCTGC
TTCAGCATGTCCAACATCTTCGCCTGAAAGACGGGATCCACGGCCTCTAC
GGATACTCCAGTACCCGTTTGCGGCATGGCGAACACATCGATGACCTGCA
CCGTGTAGTCGTCCACGAATTCGCCCAACATCAGACCCATCACCTCCATG
GGCACGCCGGCCCGTCCGTGCTTAAGCATCTTGAGCAGGGCCAAGGACGA
GATGTACACCTGCTCGGCGGTGTCTACGACGGGCGCATCTGTGGGCGGGG
CGGCCTGTGGCATAGC
BS11385.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18174-PA | 927 | Rpn11-RA | 28..927 | 916..17 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-RA | 1208 | CG18174-RA | 198..1098 | 916..16 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5058786..5059523 | 179..916 | 3690 | 100 | Plus |
2L | 23513712 | 2L | 5058514..5058678 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:05:32 has no hits.
BS11385.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:28 Download gff for
BS11385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-PA | 28..927 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:29 Download gff for
BS11385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18174-PA | 28..927 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:31:02 Download gff for
BS11385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 198..1101 | 10..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:51 Download gff for
BS11385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 198..1101 | 10..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:51 Download gff for
BS11385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5058511..5058676 | 10..178 | 98 | <- | Plus |
2L | 5058786..5059523 | 179..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:31:02 Download gff for
BS11385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5058511..5058676 | 10..178 | 98 | <- | Plus |
arm_2L | 5058786..5059523 | 179..916 | 100 | | Plus |
BS11385.5prime Sequence
855 bp (839 high quality bases) assembled on 2006-04-18
> BS11385.5prime
GAAGTTATCAGTCGACATGGATCGTCTGCTACGTCTTGGAGGTGCTATGC
CACAGGCCGCCCCGCCCACAGATGCGCCCGTCGTAGACACCGCCGAGCAG
GTGTACATCTCGTCCTTGGCCCTGCTCAAGATGCTTAAGCACGGACGGGC
CGGCGTGCCCATGGAGGTGATGGGTCTGATGTTGGGCGAATTCGTGGACG
ACTACACGGTGCAGGTCATCGATGTGTTCGCCATGCCGCAAACGGGTACT
GGAGTATCCGTAGAGGCCGTGGATCCCGTCTTTCAGGCGAAGATGTTGGA
CATGCTGAAGCAGACGGGTCGACCCGAAATGGTCGTCGGCTGGTATCACT
CGCATCCCGGTTTCGGCTGCTGGCTGTCCGGCGTGGACATCAATACGCAG
CAATCCTTCGAGGCGCTGTCGGAGCGAGCCGTAGCCGTCGTCGTCGATCC
CATTCAGTCTGTCAAGGGCAAAGTGGTCATCGATGCCTTCCGCCTGATCA
ATCCCAACATGCTTGTGCTGGGACAGGAGCCCCGGCAGACAACCTCCAAT
TTGGGTCATCTGCAAAAGCCCTCCGTACAGGCCCTGATCCACGGGCTCAA
TCGCCACTACTACTCGATTAGCATAAACTACCGCAAGAACGAACTGGAGC
AGAAGATGCTTCTCAATCTGCACAAAAAGTCGTGGAAGGACGGCCTCACG
TTGTCCGACTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGCCGA
GATGCTGGATCTCGCCAAGAACTACAACAAGTCACTGGAGGACGAGGAGA
AAATGACGCCCGAGCAGCTGGCGATCAAGAACGTGGGCAAGCAGGACCCC
CAGCG
BS11385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18174-PA | 927 | Rpn11-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-RA | 1208 | CG18174-RA | 171..1009 | 17..855 | 4180 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5058786..5059550 | 781..17 | 3825 | 100 | Minus |
2L | 23513712 | 2L | 5058603..5058678 | 855..780 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:55:27 has no hits.
BS11385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:29 Download gff for
BS11385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-PA | 1..839 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:31 Download gff for
BS11385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18174-PA | 1..839 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:48:28 Download gff for
BS11385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 165..1009 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:05:57 Download gff for
BS11385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 165..1009 | 9..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:05:57 Download gff for
BS11385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5058603..5058676 | 782..855 | 98 | <- | Minus |
2L | 5058786..5059556 | 9..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:48:28 Download gff for
BS11385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5058603..5058676 | 782..855 | 98 | <- | Minus |
arm_2L | 5058786..5059556 | 9..781 | 99 | | Minus |
BS11385.complete Sequence
959 bp assembled on 2006-11-01
GenBank Submission: FJ636846
> BS11385.complete
GAAGTTATCAGTCGACATGGATCGTCTGCTACGTCTTGGAGGTGCTATGC
CACAGGCCGCCCCGCCCACAGATGCGCCCGTCGTAGACACCGCCGAGCAG
GTGTACATCTCGTCCTTGGCCCTGCTCAAGATGCTTAAGCACGGACGGGC
CGGCGTGCCCATGGAGGTGATGGGTCTGATGTTGGGCGAATTCGTGGACG
ACTACACGGTGCAGGTCATCGATGTGTTCGCCATGCCGCAAACGGGTACT
GGAGTATCCGTAGAGGCCGTGGATCCCGTCTTTCAGGCGAAGATGTTGGA
CATGCTGAAGCAGACGGGTCGACCCGAAATGGTCGTCGGCTGGTATCACT
CGCATCCCGGTTTCGGCTGCTGGCTGTCCGGCGTGGACATCAATACGCAG
CAATCCTTCGAGGCGCTGTCGGAGCGAGCCGTAGCCGTCGTCGTCGATCC
CATTCAGTCTGTCAAGGGCAAAGTGGTCATCGATGCCTTCCGCCTGATCA
ATCCCAACATGCTTGTGCTGGGACAGGAGCCCCGGCAGACAACCTCCAAT
TTGGGTCATCTGCAAAAGCCCTCCGTACAGGCCCTGATCCACGGGCTCAA
TCGCCACTACTACTCGATTAGCATAAACTACCGCAAGAACGAACTGGAGC
AGAAGATGCTTCTCAATCTGCACAAAAAGTCGTGGAAGGACGGCCTCACG
TTGTCCGACTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGCCGA
GATGCTGGATCTCGCCAAGAACTACAACAAGTCACTGGAGGACGAGGAGA
AAATGACGCCCGAGCAGCTGGCGATCAAGAACGTGGGCAAGCAGGACCCC
AAGCGGCATTTGGAGGAGAAGGTGGACAAGGTTATGCAGAACAATATTGT
GCAGTGCCTGGGCGCCATGCTGGACACCATAGTCTTTAAGTGAAAGCTTT
CTAGACCAT
BS11385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-RA | 927 | CG18174-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-RA | 1208 | CG18174-RA | 171..1098 | 17..944 | 4640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5058786..5059550 | 781..17 | 3825 | 100 | Minus |
2L | 23513712 | 2L | 5058514..5058678 | 944..780 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:01:41 has no hits.
BS11385.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:11 Download gff for
BS11385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:21 Download gff for
BS11385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 191..1127 | 9..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:12 Download gff for
BS11385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 171..1096 | 17..942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:11 Download gff for
BS11385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 191..1127 | 9..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:40 Download gff for
BS11385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 171..1096 | 17..942 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:40 Download gff for
BS11385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5058516..5058676 | 782..942 | 100 | <- | Minus |
2L | 5058786..5059550 | 17..781 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:12 Download gff for
BS11385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5058516..5058676 | 782..942 | 100 | <- | Minus |
arm_2L | 5058786..5059550 | 17..781 | 100 | | Minus |
BS11385.pep Sequence
Translation from 16 to 942
> BS11385.pep
MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPME
VMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQT
GRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK
GKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYS
ISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLA
KNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGA
MLDTIVFK*
BS11385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-PA | 308 | CG18174-PA | 1..308 | 1..308 | 1592 | 100 | Plus |
CSN5-PB | 325 | CG14884-PB | 50..273 | 27..256 | 376 | 38 | Plus |
CSN5-PA | 327 | CG14884-PA | 50..273 | 27..256 | 376 | 38 | Plus |