Clone BS11385 Report

Search the DGRC for BS11385

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptRpn11-RA
Protein status:BS11385.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11385.3prime Sequence

916 bp (834 high quality bases) assembled on 2006-04-18

> BS11385.3prime
ATGGTCTAGAAAGCTTTCACTTAAAGACTATGGTGTCCAGCATGGCGCCC
AGGCACTGCACAATATTGTTCTGCATAACCTTGTCCACCTTCTCCTCCAA
ATGCCGCTTGGGGTCCTGCTTGCCCACGTTCTTGATCGCCAGCTGCTCGG
GCGTCATTTTCTCCTCGTCCTCCAGTGACTTGTTGTAGTTCTTGGCGAGA
TCCAGCATCTCGGCCACGGTGTCCTCGTTGATGGAACAGTGCTCATTGTA
GTCGGACAACGTGAGGCCGTCCTTCCACGACTTTTTGTGCAGATTGAGAA
GCATCTTCTGCTCCAGTTCGTTCTTGCGGTAGTTTATGCTAATCGAGTAG
TAGTGGCGATTGAGCCCGTGGATCAGGGCCTGTACGGAGGGCTTTTGCAG
ATGACCCAAATTGGAGGTTGTCTGCCGGGGCTCCTGTCCCAGCACAAGCA
TGTTGGGATTGATCAGGCGGAAGGCATCGATGACCACTTTGCCCTTGACA
GACTGAATGGGATCGACGACGACGGCTACGGCTCGCTCCGACAGCGCCTC
GAAGGATTGCTGCGTATTGATGTCCACGCCGGACAGCCAGCAGCCGAAAC
CGGGATGCGAGTGATACCAGCCGACGACCATTTCGGGTCGACCCGTCTGC
TTCAGCATGTCCAACATCTTCGCCTGAAAGACGGGATCCACGGCCTCTAC
GGATACTCCAGTACCCGTTTGCGGCATGGCGAACACATCGATGACCTGCA
CCGTGTAGTCGTCCACGAATTCGCCCAACATCAGACCCATCACCTCCATG
GGCACGCCGGCCCGTCCGTGCTTAAGCATCTTGAGCAGGGCCAAGGACGA
GATGTACACCTGCTCGGCGGTGTCTACGACGGGCGCATCTGTGGGCGGGG
CGGCCTGTGGCATAGC

BS11385.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18174-PA 927 Rpn11-RA 28..927 916..17 4500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-RA 1208 CG18174-RA 198..1098 916..16 4505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5058786..5059523 179..916 3690 100 Plus
2L 23513712 2L 5058514..5058678 16..180 825 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:05:32 has no hits.

BS11385.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:28 Download gff for BS11385.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-PA 28..927 17..916 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:29 Download gff for BS11385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18174-PA 28..927 17..916 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:31:02 Download gff for BS11385.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 198..1101 10..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:51 Download gff for BS11385.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 198..1101 10..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:51 Download gff for BS11385.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5058511..5058676 10..178 98 <- Plus
2L 5058786..5059523 179..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:31:02 Download gff for BS11385.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5058511..5058676 10..178 98 <- Plus
arm_2L 5058786..5059523 179..916 100   Plus

BS11385.5prime Sequence

855 bp (839 high quality bases) assembled on 2006-04-18

> BS11385.5prime
GAAGTTATCAGTCGACATGGATCGTCTGCTACGTCTTGGAGGTGCTATGC
CACAGGCCGCCCCGCCCACAGATGCGCCCGTCGTAGACACCGCCGAGCAG
GTGTACATCTCGTCCTTGGCCCTGCTCAAGATGCTTAAGCACGGACGGGC
CGGCGTGCCCATGGAGGTGATGGGTCTGATGTTGGGCGAATTCGTGGACG
ACTACACGGTGCAGGTCATCGATGTGTTCGCCATGCCGCAAACGGGTACT
GGAGTATCCGTAGAGGCCGTGGATCCCGTCTTTCAGGCGAAGATGTTGGA
CATGCTGAAGCAGACGGGTCGACCCGAAATGGTCGTCGGCTGGTATCACT
CGCATCCCGGTTTCGGCTGCTGGCTGTCCGGCGTGGACATCAATACGCAG
CAATCCTTCGAGGCGCTGTCGGAGCGAGCCGTAGCCGTCGTCGTCGATCC
CATTCAGTCTGTCAAGGGCAAAGTGGTCATCGATGCCTTCCGCCTGATCA
ATCCCAACATGCTTGTGCTGGGACAGGAGCCCCGGCAGACAACCTCCAAT
TTGGGTCATCTGCAAAAGCCCTCCGTACAGGCCCTGATCCACGGGCTCAA
TCGCCACTACTACTCGATTAGCATAAACTACCGCAAGAACGAACTGGAGC
AGAAGATGCTTCTCAATCTGCACAAAAAGTCGTGGAAGGACGGCCTCACG
TTGTCCGACTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGCCGA
GATGCTGGATCTCGCCAAGAACTACAACAAGTCACTGGAGGACGAGGAGA
AAATGACGCCCGAGCAGCTGGCGATCAAGAACGTGGGCAAGCAGGACCCC
CAGCG

BS11385.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18174-PA 927 Rpn11-RA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-RA 1208 CG18174-RA 171..1009 17..855 4180 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5058786..5059550 781..17 3825 100 Minus
2L 23513712 2L 5058603..5058678 855..780 365 98.7 Minus
Blast to na_te.dros performed on 2015-02-13 09:55:27 has no hits.

BS11385.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:29 Download gff for BS11385.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-PA 1..839 17..855 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:31 Download gff for BS11385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18174-PA 1..839 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:48:28 Download gff for BS11385.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 165..1009 9..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:05:57 Download gff for BS11385.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 165..1009 9..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:05:57 Download gff for BS11385.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5058603..5058676 782..855 98 <- Minus
2L 5058786..5059556 9..781 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:48:28 Download gff for BS11385.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5058603..5058676 782..855 98 <- Minus
arm_2L 5058786..5059556 9..781 99   Minus

BS11385.complete Sequence

959 bp assembled on 2006-11-01

GenBank Submission: FJ636846

> BS11385.complete
GAAGTTATCAGTCGACATGGATCGTCTGCTACGTCTTGGAGGTGCTATGC
CACAGGCCGCCCCGCCCACAGATGCGCCCGTCGTAGACACCGCCGAGCAG
GTGTACATCTCGTCCTTGGCCCTGCTCAAGATGCTTAAGCACGGACGGGC
CGGCGTGCCCATGGAGGTGATGGGTCTGATGTTGGGCGAATTCGTGGACG
ACTACACGGTGCAGGTCATCGATGTGTTCGCCATGCCGCAAACGGGTACT
GGAGTATCCGTAGAGGCCGTGGATCCCGTCTTTCAGGCGAAGATGTTGGA
CATGCTGAAGCAGACGGGTCGACCCGAAATGGTCGTCGGCTGGTATCACT
CGCATCCCGGTTTCGGCTGCTGGCTGTCCGGCGTGGACATCAATACGCAG
CAATCCTTCGAGGCGCTGTCGGAGCGAGCCGTAGCCGTCGTCGTCGATCC
CATTCAGTCTGTCAAGGGCAAAGTGGTCATCGATGCCTTCCGCCTGATCA
ATCCCAACATGCTTGTGCTGGGACAGGAGCCCCGGCAGACAACCTCCAAT
TTGGGTCATCTGCAAAAGCCCTCCGTACAGGCCCTGATCCACGGGCTCAA
TCGCCACTACTACTCGATTAGCATAAACTACCGCAAGAACGAACTGGAGC
AGAAGATGCTTCTCAATCTGCACAAAAAGTCGTGGAAGGACGGCCTCACG
TTGTCCGACTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGCCGA
GATGCTGGATCTCGCCAAGAACTACAACAAGTCACTGGAGGACGAGGAGA
AAATGACGCCCGAGCAGCTGGCGATCAAGAACGTGGGCAAGCAGGACCCC
AAGCGGCATTTGGAGGAGAAGGTGGACAAGGTTATGCAGAACAATATTGT
GCAGTGCCTGGGCGCCATGCTGGACACCATAGTCTTTAAGTGAAAGCTTT
CTAGACCAT

BS11385.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-RA 927 CG18174-PA 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-RA 1208 CG18174-RA 171..1098 17..944 4640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5058786..5059550 781..17 3825 100 Minus
2L 23513712 2L 5058514..5058678 944..780 825 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:01:41 has no hits.

BS11385.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:11 Download gff for BS11385.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..927 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:21 Download gff for BS11385.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 191..1127 9..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:12 Download gff for BS11385.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 171..1096 17..942 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:11 Download gff for BS11385.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 191..1127 9..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:40 Download gff for BS11385.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 171..1096 17..942 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:40 Download gff for BS11385.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5058516..5058676 782..942 100 <- Minus
2L 5058786..5059550 17..781 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:12 Download gff for BS11385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5058516..5058676 782..942 100 <- Minus
arm_2L 5058786..5059550 17..781 100   Minus

BS11385.pep Sequence

Translation from 16 to 942

> BS11385.pep
MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPME
VMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQT
GRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK
GKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYS
ISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLA
KNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGA
MLDTIVFK*

BS11385.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-PA 308 CG18174-PA 1..308 1..308 1592 100 Plus
CSN5-PB 325 CG14884-PB 50..273 27..256 376 38 Plus
CSN5-PA 327 CG14884-PA 50..273 27..256 376 38 Plus