Clone Sequence Records
BS11387.3prime Sequence
903 bp (799 high quality bases) assembled on 2006-04-18
> BS11387.3prime
ATGGTCTAGAAAGCTTTCATACTGAATATGTTTGGCACATTTGGTTAATA
CTATTCTTCTGCACAGCGTGAAACAGCGGCGTGCTGCGGATGACGCCCGA
CAGCTCCTTGGAGTTCTTGCTTTGGTGATAGTTTCTACTCGGCATCGGCG
ACAACGGTTCGCCCCAGAACTTGAGCAGCGCAAAGATCTTGTAGTAGGCC
ACTCTGTAGTTGCGATTGCTGGCCGCATAGATGATCGGGTTAATGACACT
GGAAGCCCAGGCCATCACGGAGGCGATGATGTGCAGCCAGGGGTACGAGG
TATTGCGCTCGTCGTCCACCACATTGGCCAGCATTAGCGGCAGGAAGCAG
ACGAGGAAGCACAGAAAGATGGTGACCATCATGACGGTCAGTCGATTGTC
TTCGCGCGCCTTGCGCGTGCATGTGGTGGTCATGTAGGATCCGCCGCCGG
ACGACGAGGAGCCCTTGGCCGCTGCGATCTGGAAGTTATCGTGGTTGCGA
ATCTTCTTTTTCTGGTGCAGCACCGTAATGTAGATGCACGAGTACGAAAC
GATGATCACCAGGCAAGGCAGCAGGAAGCCGATCACGAACAGCGTCTTCT
TGATCGATCGCCCCTCCTTCTTGAGTATTGTGCAGGAGAAGGTGGCCTCG
TCCAGGCCCATCTCGCCCCAGATGCCCAATATGGGCGGCAGCAACAGCAG
AAAGGAGACGGCCCAAACGAACAACAGCTGCAGGGTTATGAACTTAGGCT
TATATATCTGCGAGTAGCGGCTGTGGCAAGCGATGAGTATATATCTGTTC
AGGGTGATGCCCACCATGCTGAGGAGTGAAACAGCCACATTGCCATAGAA
GATCACCGGAAAGATCTTGCACAATGTGGTACCAAAAGTCCAGCTCTCCT
GGA
BS11387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3171-PA | 1179 | Tre1-RA | 293..1179 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-RB | 1499 | CG3171-RB | 477..1363 | 903..17 | 4435 | 100 | Minus |
Tre1-RA | 1634 | CG3171-RA | 612..1498 | 903..17 | 4435 | 100 | Minus |
Tre1-RC | 1655 | CG3171-RC | 612..1519 | 903..17 | 4215 | 97.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5674222..5674710 | 204..692 | 2445 | 100 | Plus |
X | 23542271 | X | 5673966..5674155 | 17..206 | 950 | 100 | Plus |
X | 23542271 | X | 5674771..5674876 | 692..797 | 530 | 100 | Plus |
X | 23542271 | X | 5674940..5675042 | 795..897 | 515 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 19..69 | 332..382 | 129 | 72.5 | Plus |
invader3 | 5484 | invader3 INVADER3 5484bp | 5205..5255 | 332..382 | 129 | 72.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2831 | 688..733 | 121 | 78.7 | Plus |
BS11387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:32 Download gff for
BS11387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-PA | 294..1179 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:35 Download gff for
BS11387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3171-PA | 294..1179 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:52:22 Download gff for
BS11387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 613..1498 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:14 Download gff for
BS11387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 613..1498 | 17..902 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:14 Download gff for
BS11387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5673966..5674152 | 17..203 | 100 | <- | Plus |
X | 5674222..5674709 | 204..691 | 100 | <- | Plus |
X | 5674771..5674873 | 692..794 | 100 | <- | Plus |
X | 5674940..5675046 | 795..902 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:52:22 Download gff for
BS11387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5567999..5568185 | 17..203 | 100 | <- | Plus |
arm_X | 5568255..5568742 | 204..691 | 100 | <- | Plus |
arm_X | 5568804..5568906 | 692..794 | 100 | <- | Plus |
arm_X | 5568973..5569079 | 795..902 | 97 | | Plus |
BS11387.5prime Sequence
917 bp (760 high quality bases) assembled on 2006-04-18
> BS11387.5prime
GAAGTTATCAGTCGACATGGATCAGGACATGGGCATGGCAACGGGCTACT
TTCAGGACGCAGACATGCAGATGGATGAACCGGCGGCCGCCACGCAATCG
ATCTACCCGCATTCGGCGACATTATTCGCGGCCATTAGTGCCTGTGTCTT
TGTGACGATCGGCGTTCTTGGCAACCTGATTACCCTGCTGGCGCTGCTCA
AGAGCCCCACGATACGGGAGCATGCCACAACCGCCTTCGTCATTTCGCTA
AGCATCTCCGACCTGCTCTTCTGCTCCTTCAGCCTGCCACTGACCGCAGT
GCGATTCTTCCAGGAGAGCTGGACTTTTGGTACCACATTGTGCAAGATCT
TTCCGGTGATCTTCTATGGCAATGTGGCTGTTTCACTCCTCAGCATGGTG
GGCATCACCCTGAACAGATATATACTCATCGCTTGCCACAGCCGCTACTC
GCAGATATATAAGCCTAAGTTCATAACCCTGCAGCTGTTGTTCGTTTGGG
CCGTCTCCTTTCTGCTGTTGCTGCCGCCCATATTGGGCATCTGGGGCGAG
ATGGGCCTGGACGAGGCCACCTTCTCCTGCACAATACTCAAGAAGGAGGG
GCGATCGATCAAGAAGACGCTGTTCGTGATCGGCTTCCTGCTGCCTTGCC
TGGTGATCATCGTTTCGTACTCGTGCATCTACATTACGGTGCTGCACCAG
AAAAAGAAGATTCGCAACCACGATAACTTCCAGATCGCAGCGGCCAAGGG
CTCCTCGTCGTCCGGCGGCGGATCCTACATGACCACCACATGCACGCGCA
AGGCGCGCGAAGACAATCGACTGACCGTCATGATGGTCACCATCTTTCTG
TGCTTCCTCGTCTGCTTCCTGCCGCTAATGCTGGCCAATGTGGTGGACGA
CGAGCGCATTACCTCGT
BS11387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3171-PA | 1179 | Tre1-RA | 1..901 | 17..917 | 4480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-RB | 1499 | CG3171-RB | 185..1085 | 17..917 | 4490 | 99.9 | Plus |
Tre1-RC | 1655 | CG3171-RC | 320..1220 | 17..917 | 4490 | 99.9 | Plus |
Tre1-RA | 1634 | CG3171-RA | 320..1220 | 17..917 | 4490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5674313..5674710 | 917..520 | 1975 | 99.7 | Minus |
X | 23542271 | X | 5675329..5675483 | 171..17 | 775 | 100 | Minus |
X | 23542271 | X | 5675112..5675258 | 316..170 | 735 | 100 | Minus |
X | 23542271 | X | 5674771..5674876 | 520..415 | 530 | 100 | Minus |
X | 23542271 | X | 5674940..5675042 | 417..315 | 515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 19..69 | 880..830 | 129 | 72.5 | Minus |
invader3 | 5484 | invader3 INVADER3 5484bp | 5205..5255 | 880..830 | 129 | 72.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2831 | 524..479 | 121 | 78.7 | Minus |
BS11387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:33 Download gff for
BS11387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:36 Download gff for
BS11387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3171-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:47 Download gff for
BS11387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 318..1220 | 14..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:08 Download gff for
BS11387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 318..1220 | 14..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:08 Download gff for
BS11387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5675112..5675257 | 171..316 | 100 | <- | Minus |
X | 5675330..5675485 | 14..170 | 99 | | Minus |
X | 5674313..5674709 | 521..917 | 99 | <- | Minus |
X | 5674771..5674873 | 418..520 | 100 | <- | Minus |
X | 5674940..5675040 | 317..417 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:47 Download gff for
BS11387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5568346..5568742 | 521..917 | 99 | <- | Minus |
arm_X | 5568804..5568906 | 418..520 | 100 | <- | Minus |
arm_X | 5568973..5569073 | 317..417 | 100 | <- | Minus |
arm_X | 5569145..5569290 | 171..316 | 100 | <- | Minus |
arm_X | 5569363..5569518 | 14..170 | 99 | | Minus |
BS11387.complete Sequence
1211 bp assembled on 2006-11-01
GenBank Submission: FJ636847
> BS11387.complete
GAAGTTATCAGTCGACATGGATCAGGACATGGGCATGGCAACGGGCTACT
TTCAGGACGCAGACATGCAGATGGATGAACCGGCGGCCGCCACGCAATCG
ATCTACCCGCATTCGGCGACATTATTCGCGGCCATTAGTGCCTGTGTCTT
TGTGACGATCGGCGTTCTTGGCAACCTGATTACCCTGCTGGCGCTGCTCA
AGAGCCCCACGATACGGGAGCATGCCACAACCGCCTTCGTCATTTCGCTA
AGCATCTCCGACCTGCTCTTCTGCTCCTTCAGCCTGCCACTGACCGCAGT
GCGATTCTTCCAGGAGAGCTGGACTTTTGGTACCACATTGTGCAAGATCT
TTCCGGTGATCTTCTATGGCAATGTGGCTGTTTCACTCCTCAGCATGGTG
GGCATCACCCTGAACAGATATATACTCATCGCTTGCCACAGCCGCTACTC
GCAGATATATAAGCCTAAGTTCATAACCCTGCAGCTGTTGTTCGTTTGGG
CCGTCTCCTTTCTGCTGTTGCTGCCGCCCATATTGGGCATCTGGGGCGAG
ATGGGCCTGGACGAGGCCACCTTCTCCTGCACAATACTCAAGAAGGAGGG
GCGATCGATCAAGAAGACGCTGTTCGTGATCGGCTTCCTGCTGCCTTGCC
TGGTGATCATCGTTTCGTACTCGTGCATCTACATTACGGTGCTGCACCAG
AAAAAGAAGATTCGCAACCACGATAACTTCCAGATCGCAGCGGCCAAGGG
CTCCTCGTCGTCCGGCGGCGGATCCTACATGACCACCACATGCACGCGCA
AGGCGCGCGAAGACAATCGACTGACCGTCATGATGGTCACCATCTTTCTG
TGCTTCCTCGTCTGCTTCCTGCCGCTAATGCTGGCCAATGTGGTGGACGA
CGAGCGCAATACCTCGTACCCCTGGCTGCACATCATCGCCTCCGTGATGG
CCTGGGCTTCCAGTGTCATTAACCCGATCATCTATGCGGCCAGCAATCGC
AACTACAGAGTGGCCTACTACAAGATCTTTGCGCTGCTCAAGTTCTGGGG
CGAACCGTTGTCGCCGATGCCGAGTAGAAACTATCACCAAAGCAAGAACT
CCAAGGAGCTGTCGGGCGTCATCCGCAGCACGCCGCTGTTTCACGCTGTG
CAGAAGAATAGTATTAACCAAATGTGCCAAACATATTCAGTATGAAAGCT
TTCTAGACCAT
BS11387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-RB | 1179 | CG3171-PB | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Tre1-RA | 1179 | CG3171-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Tre1-RC | 1200 | CG3171-PC | 1..1200 | 17..1195 | 5650 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-RB | 1499 | CG3171-RB | 185..1363 | 17..1195 | 5895 | 100 | Plus |
Tre1-RA | 1634 | CG3171-RA | 320..1498 | 17..1195 | 5895 | 100 | Plus |
Tre1-RC | 1655 | CG3171-RC | 320..1519 | 17..1195 | 5650 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5674222..5674710 | 1008..520 | 2445 | 100 | Minus |
X | 23542271 | X | 5673966..5674155 | 1195..1006 | 950 | 100 | Minus |
X | 23542271 | X | 5675329..5675483 | 171..17 | 775 | 100 | Minus |
X | 23542271 | X | 5675112..5675258 | 316..170 | 735 | 100 | Minus |
X | 23542271 | X | 5674771..5674876 | 520..415 | 530 | 100 | Minus |
X | 23542271 | X | 5674940..5675042 | 417..315 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 19..69 | 880..830 | 129 | 72.5 | Minus |
invader3 | 5484 | invader3 INVADER3 5484bp | 5205..5255 | 880..830 | 129 | 72.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2831 | 524..479 | 121 | 78.7 | Minus |
BS11387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:12 Download gff for
BS11387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 1..1179 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:23 Download gff for
BS11387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 316..1496 | 14..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:26 Download gff for
BS11387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 320..1497 | 17..1194 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:13 Download gff for
BS11387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 316..1496 | 14..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:32 Download gff for
BS11387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 320..1497 | 17..1194 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:32 Download gff for
BS11387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5673967..5674152 | 1009..1194 | 100 | <- | Minus |
X | 5674222..5674709 | 521..1008 | 100 | <- | Minus |
X | 5674771..5674873 | 418..520 | 100 | <- | Minus |
X | 5674940..5675040 | 317..417 | 100 | <- | Minus |
X | 5675112..5675257 | 171..316 | 100 | <- | Minus |
X | 5675330..5675483 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:26 Download gff for
BS11387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5569145..5569290 | 171..316 | 100 | <- | Minus |
arm_X | 5569363..5569516 | 17..170 | 100 | | Minus |
arm_X | 5568000..5568185 | 1009..1194 | 100 | <- | Minus |
arm_X | 5568255..5568742 | 521..1008 | 100 | <- | Minus |
arm_X | 5568804..5568906 | 418..520 | 100 | <- | Minus |
arm_X | 5568973..5569073 | 317..417 | 100 | <- | Minus |
BS11387.pep Sequence
Translation from 16 to 1194
> BS11387.pep
MDQDMGMATGYFQDADMQMDEPAAATQSIYPHSATLFAAISACVFVTIGV
LGNLITLLALLKSPTIREHATTAFVISLSISDLLFCSFSLPLTAVRFFQE
SWTFGTTLCKIFPVIFYGNVAVSLLSMVGITLNRYILIACHSRYSQIYKP
KFITLQLLFVWAVSFLLLLPPILGIWGEMGLDEATFSCTILKKEGRSIKK
TLFVIGFLLPCLVIIVSYSCIYITVLHQKKKIRNHDNFQIAAAKGSSSSG
GGSYMTTTCTRKAREDNRLTVMMVTIFLCFLVCFLPLMLANVVDDERNTS
YPWLHIIASVMAWASSVINPIIYAASNRNYRVAYYKIFALLKFWGEPLSP
MPSRNYHQSKNSKELSGVIRSTPLFHAVQKNSINQMCQTYSV*
BS11387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-PB | 392 | CG3171-PB | 1..392 | 1..392 | 2025 | 100 | Plus |
Tre1-PA | 392 | CG3171-PA | 1..392 | 1..392 | 2025 | 100 | Plus |
Tre1-PC | 399 | CG3171-PC | 1..399 | 1..392 | 2007 | 98.2 | Plus |
moody-PD | 633 | CG4322-PD | 22..374 | 19..334 | 571 | 36.3 | Plus |
moody-PC | 633 | CG4322-PC | 22..374 | 19..334 | 571 | 36.3 | Plus |