Clone BS11387 Report

Search the DGRC for BS11387

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptTre1-RA
Protein status:BS11387.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11387.3prime Sequence

903 bp (799 high quality bases) assembled on 2006-04-18

> BS11387.3prime
ATGGTCTAGAAAGCTTTCATACTGAATATGTTTGGCACATTTGGTTAATA
CTATTCTTCTGCACAGCGTGAAACAGCGGCGTGCTGCGGATGACGCCCGA
CAGCTCCTTGGAGTTCTTGCTTTGGTGATAGTTTCTACTCGGCATCGGCG
ACAACGGTTCGCCCCAGAACTTGAGCAGCGCAAAGATCTTGTAGTAGGCC
ACTCTGTAGTTGCGATTGCTGGCCGCATAGATGATCGGGTTAATGACACT
GGAAGCCCAGGCCATCACGGAGGCGATGATGTGCAGCCAGGGGTACGAGG
TATTGCGCTCGTCGTCCACCACATTGGCCAGCATTAGCGGCAGGAAGCAG
ACGAGGAAGCACAGAAAGATGGTGACCATCATGACGGTCAGTCGATTGTC
TTCGCGCGCCTTGCGCGTGCATGTGGTGGTCATGTAGGATCCGCCGCCGG
ACGACGAGGAGCCCTTGGCCGCTGCGATCTGGAAGTTATCGTGGTTGCGA
ATCTTCTTTTTCTGGTGCAGCACCGTAATGTAGATGCACGAGTACGAAAC
GATGATCACCAGGCAAGGCAGCAGGAAGCCGATCACGAACAGCGTCTTCT
TGATCGATCGCCCCTCCTTCTTGAGTATTGTGCAGGAGAAGGTGGCCTCG
TCCAGGCCCATCTCGCCCCAGATGCCCAATATGGGCGGCAGCAACAGCAG
AAAGGAGACGGCCCAAACGAACAACAGCTGCAGGGTTATGAACTTAGGCT
TATATATCTGCGAGTAGCGGCTGTGGCAAGCGATGAGTATATATCTGTTC
AGGGTGATGCCCACCATGCTGAGGAGTGAAACAGCCACATTGCCATAGAA
GATCACCGGAAAGATCTTGCACAATGTGGTACCAAAAGTCCAGCTCTCCT
GGA

BS11387.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3171-PA 1179 Tre1-RA 293..1179 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-RB 1499 CG3171-RB 477..1363 903..17 4435 100 Minus
Tre1-RA 1634 CG3171-RA 612..1498 903..17 4435 100 Minus
Tre1-RC 1655 CG3171-RC 612..1519 903..17 4215 97.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5674222..5674710 204..692 2445 100 Plus
X 23542271 X 5673966..5674155 17..206 950 100 Plus
X 23542271 X 5674771..5674876 692..797 530 100 Plus
X 23542271 X 5674940..5675042 795..897 515 100 Plus
Blast to na_te.dros performed 2015-02-10 23:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 19..69 332..382 129 72.5 Plus
invader3 5484 invader3 INVADER3 5484bp 5205..5255 332..382 129 72.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2831 688..733 121 78.7 Plus

BS11387.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:32 Download gff for BS11387.3prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-PA 294..1179 17..902 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:35 Download gff for BS11387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3171-PA 294..1179 17..902 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:52:22 Download gff for BS11387.3prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 613..1498 17..902 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:14 Download gff for BS11387.3prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 613..1498 17..902 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:14 Download gff for BS11387.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5673966..5674152 17..203 100 <- Plus
X 5674222..5674709 204..691 100 <- Plus
X 5674771..5674873 692..794 100 <- Plus
X 5674940..5675046 795..902 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:52:22 Download gff for BS11387.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5567999..5568185 17..203 100 <- Plus
arm_X 5568255..5568742 204..691 100 <- Plus
arm_X 5568804..5568906 692..794 100 <- Plus
arm_X 5568973..5569079 795..902 97   Plus

BS11387.5prime Sequence

917 bp (760 high quality bases) assembled on 2006-04-18

> BS11387.5prime
GAAGTTATCAGTCGACATGGATCAGGACATGGGCATGGCAACGGGCTACT
TTCAGGACGCAGACATGCAGATGGATGAACCGGCGGCCGCCACGCAATCG
ATCTACCCGCATTCGGCGACATTATTCGCGGCCATTAGTGCCTGTGTCTT
TGTGACGATCGGCGTTCTTGGCAACCTGATTACCCTGCTGGCGCTGCTCA
AGAGCCCCACGATACGGGAGCATGCCACAACCGCCTTCGTCATTTCGCTA
AGCATCTCCGACCTGCTCTTCTGCTCCTTCAGCCTGCCACTGACCGCAGT
GCGATTCTTCCAGGAGAGCTGGACTTTTGGTACCACATTGTGCAAGATCT
TTCCGGTGATCTTCTATGGCAATGTGGCTGTTTCACTCCTCAGCATGGTG
GGCATCACCCTGAACAGATATATACTCATCGCTTGCCACAGCCGCTACTC
GCAGATATATAAGCCTAAGTTCATAACCCTGCAGCTGTTGTTCGTTTGGG
CCGTCTCCTTTCTGCTGTTGCTGCCGCCCATATTGGGCATCTGGGGCGAG
ATGGGCCTGGACGAGGCCACCTTCTCCTGCACAATACTCAAGAAGGAGGG
GCGATCGATCAAGAAGACGCTGTTCGTGATCGGCTTCCTGCTGCCTTGCC
TGGTGATCATCGTTTCGTACTCGTGCATCTACATTACGGTGCTGCACCAG
AAAAAGAAGATTCGCAACCACGATAACTTCCAGATCGCAGCGGCCAAGGG
CTCCTCGTCGTCCGGCGGCGGATCCTACATGACCACCACATGCACGCGCA
AGGCGCGCGAAGACAATCGACTGACCGTCATGATGGTCACCATCTTTCTG
TGCTTCCTCGTCTGCTTCCTGCCGCTAATGCTGGCCAATGTGGTGGACGA
CGAGCGCATTACCTCGT

BS11387.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3171-PA 1179 Tre1-RA 1..901 17..917 4480 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-RB 1499 CG3171-RB 185..1085 17..917 4490 99.9 Plus
Tre1-RC 1655 CG3171-RC 320..1220 17..917 4490 99.9 Plus
Tre1-RA 1634 CG3171-RA 320..1220 17..917 4490 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5674313..5674710 917..520 1975 99.7 Minus
X 23542271 X 5675329..5675483 171..17 775 100 Minus
X 23542271 X 5675112..5675258 316..170 735 100 Minus
X 23542271 X 5674771..5674876 520..415 530 100 Minus
X 23542271 X 5674940..5675042 417..315 515 100 Minus
Blast to na_te.dros performed 2015-02-12 01:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 19..69 880..830 129 72.5 Minus
invader3 5484 invader3 INVADER3 5484bp 5205..5255 880..830 129 72.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2831 524..479 121 78.7 Minus

BS11387.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:33 Download gff for BS11387.5prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-PA 1..901 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:36 Download gff for BS11387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3171-PA 1..901 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:47 Download gff for BS11387.5prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 318..1220 14..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:08 Download gff for BS11387.5prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 318..1220 14..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:08 Download gff for BS11387.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5675112..5675257 171..316 100 <- Minus
X 5675330..5675485 14..170 99   Minus
X 5674313..5674709 521..917 99 <- Minus
X 5674771..5674873 418..520 100 <- Minus
X 5674940..5675040 317..417 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:47 Download gff for BS11387.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5568346..5568742 521..917 99 <- Minus
arm_X 5568804..5568906 418..520 100 <- Minus
arm_X 5568973..5569073 317..417 100 <- Minus
arm_X 5569145..5569290 171..316 100 <- Minus
arm_X 5569363..5569518 14..170 99   Minus

BS11387.complete Sequence

1211 bp assembled on 2006-11-01

GenBank Submission: FJ636847

> BS11387.complete
GAAGTTATCAGTCGACATGGATCAGGACATGGGCATGGCAACGGGCTACT
TTCAGGACGCAGACATGCAGATGGATGAACCGGCGGCCGCCACGCAATCG
ATCTACCCGCATTCGGCGACATTATTCGCGGCCATTAGTGCCTGTGTCTT
TGTGACGATCGGCGTTCTTGGCAACCTGATTACCCTGCTGGCGCTGCTCA
AGAGCCCCACGATACGGGAGCATGCCACAACCGCCTTCGTCATTTCGCTA
AGCATCTCCGACCTGCTCTTCTGCTCCTTCAGCCTGCCACTGACCGCAGT
GCGATTCTTCCAGGAGAGCTGGACTTTTGGTACCACATTGTGCAAGATCT
TTCCGGTGATCTTCTATGGCAATGTGGCTGTTTCACTCCTCAGCATGGTG
GGCATCACCCTGAACAGATATATACTCATCGCTTGCCACAGCCGCTACTC
GCAGATATATAAGCCTAAGTTCATAACCCTGCAGCTGTTGTTCGTTTGGG
CCGTCTCCTTTCTGCTGTTGCTGCCGCCCATATTGGGCATCTGGGGCGAG
ATGGGCCTGGACGAGGCCACCTTCTCCTGCACAATACTCAAGAAGGAGGG
GCGATCGATCAAGAAGACGCTGTTCGTGATCGGCTTCCTGCTGCCTTGCC
TGGTGATCATCGTTTCGTACTCGTGCATCTACATTACGGTGCTGCACCAG
AAAAAGAAGATTCGCAACCACGATAACTTCCAGATCGCAGCGGCCAAGGG
CTCCTCGTCGTCCGGCGGCGGATCCTACATGACCACCACATGCACGCGCA
AGGCGCGCGAAGACAATCGACTGACCGTCATGATGGTCACCATCTTTCTG
TGCTTCCTCGTCTGCTTCCTGCCGCTAATGCTGGCCAATGTGGTGGACGA
CGAGCGCAATACCTCGTACCCCTGGCTGCACATCATCGCCTCCGTGATGG
CCTGGGCTTCCAGTGTCATTAACCCGATCATCTATGCGGCCAGCAATCGC
AACTACAGAGTGGCCTACTACAAGATCTTTGCGCTGCTCAAGTTCTGGGG
CGAACCGTTGTCGCCGATGCCGAGTAGAAACTATCACCAAAGCAAGAACT
CCAAGGAGCTGTCGGGCGTCATCCGCAGCACGCCGCTGTTTCACGCTGTG
CAGAAGAATAGTATTAACCAAATGTGCCAAACATATTCAGTATGAAAGCT
TTCTAGACCAT

BS11387.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-RB 1179 CG3171-PB 1..1179 17..1195 5895 100 Plus
Tre1-RA 1179 CG3171-PA 1..1179 17..1195 5895 100 Plus
Tre1-RC 1200 CG3171-PC 1..1200 17..1195 5650 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-RB 1499 CG3171-RB 185..1363 17..1195 5895 100 Plus
Tre1-RA 1634 CG3171-RA 320..1498 17..1195 5895 100 Plus
Tre1-RC 1655 CG3171-RC 320..1519 17..1195 5650 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5674222..5674710 1008..520 2445 100 Minus
X 23542271 X 5673966..5674155 1195..1006 950 100 Minus
X 23542271 X 5675329..5675483 171..17 775 100 Minus
X 23542271 X 5675112..5675258 316..170 735 100 Minus
X 23542271 X 5674771..5674876 520..415 530 100 Minus
X 23542271 X 5674940..5675042 417..315 515 100 Minus
Blast to na_te.dros performed 2014-11-27 01:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 19..69 880..830 129 72.5 Minus
invader3 5484 invader3 INVADER3 5484bp 5205..5255 880..830 129 72.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2831 524..479 121 78.7 Minus

BS11387.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:12 Download gff for BS11387.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 1..1179 17..1195 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:23 Download gff for BS11387.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 316..1496 14..1195 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:26 Download gff for BS11387.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 320..1497 17..1194 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:13 Download gff for BS11387.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 316..1496 14..1195 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:32 Download gff for BS11387.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 320..1497 17..1194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:32 Download gff for BS11387.complete
Subject Subject Range Query Range Percent Splice Strand
X 5673967..5674152 1009..1194 100 <- Minus
X 5674222..5674709 521..1008 100 <- Minus
X 5674771..5674873 418..520 100 <- Minus
X 5674940..5675040 317..417 100 <- Minus
X 5675112..5675257 171..316 100 <- Minus
X 5675330..5675483 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:26 Download gff for BS11387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5569145..5569290 171..316 100 <- Minus
arm_X 5569363..5569516 17..170 100   Minus
arm_X 5568000..5568185 1009..1194 100 <- Minus
arm_X 5568255..5568742 521..1008 100 <- Minus
arm_X 5568804..5568906 418..520 100 <- Minus
arm_X 5568973..5569073 317..417 100 <- Minus

BS11387.pep Sequence

Translation from 16 to 1194

> BS11387.pep
MDQDMGMATGYFQDADMQMDEPAAATQSIYPHSATLFAAISACVFVTIGV
LGNLITLLALLKSPTIREHATTAFVISLSISDLLFCSFSLPLTAVRFFQE
SWTFGTTLCKIFPVIFYGNVAVSLLSMVGITLNRYILIACHSRYSQIYKP
KFITLQLLFVWAVSFLLLLPPILGIWGEMGLDEATFSCTILKKEGRSIKK
TLFVIGFLLPCLVIIVSYSCIYITVLHQKKKIRNHDNFQIAAAKGSSSSG
GGSYMTTTCTRKAREDNRLTVMMVTIFLCFLVCFLPLMLANVVDDERNTS
YPWLHIIASVMAWASSVINPIIYAASNRNYRVAYYKIFALLKFWGEPLSP
MPSRNYHQSKNSKELSGVIRSTPLFHAVQKNSINQMCQTYSV*

BS11387.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-PB 392 CG3171-PB 1..392 1..392 2025 100 Plus
Tre1-PA 392 CG3171-PA 1..392 1..392 2025 100 Plus
Tre1-PC 399 CG3171-PC 1..399 1..392 2007 98.2 Plus
moody-PD 633 CG4322-PD 22..374 19..334 571 36.3 Plus
moody-PC 633 CG4322-PC 22..374 19..334 571 36.3 Plus