Clone Sequence Records
BS11388.3prime Sequence
849 bp (796 high quality bases) assembled on 2006-04-18
> BS11388.3prime
ATGGTCTAGAAAGCTTTTAGAATAAGGGTACTCCAGCCATTTCGTATAGG
CGATCGAAAAACTTCAACTTCGGCATTTCTGGCTGCGGAATAAACTTCAA
TTCCTCGCTTATATTTAGGACCATCCGTTTTCCGAATCGAGTTACGGGCT
TCCAATCCACCAGAGATTTAGTGAGTGGAGCATTTGGGTCCGAGGTGGCG
GCGAATTGGACAAACATGGCCACCAATCGGCGAATGGCTGTGAACTCTGG
TCGAGACTTGTCCAATTTGAAGGTAGCTGGCAGCTTGAAAATGTATCCCA
GTTCATCCACGTGTCCAACTCCCCGCTGTTCCTTGCCCATAAAGCGAATT
CGGTAGAAATTAAAATCCGGCGAGTCGAAGTCAAATCGATAAAGGTAAGT
GGGCGCCTGGCCGTAAGTCAGTCTGGATTGGATTAGTCGGTCCATAGCGT
GCACAAAGCCGTGAGTGAAGAGCTCCACCAATCCGTTTGTGTGATCTACA
GTCAACTCATGGCCGTGCGCCTCGCAGAAGTGATGGATCAATGCTTGACC
CAGTTGGCGCCGCTGTCCAGGATCACAGCGATTTCTCAGGGTCCAAGGCA
GCACCCGCTCCGGGTTGCATTGAAATTCCTTTAGCCACGAGGGGTTCATT
TTTACGAAGCTAAAAATCGACATCCCCTCGCCACTGTTGGCGCCTAAGAT
GATGGGAATACGATTGCTCCACGTGGTTCGCTGGAGGTCAATAGGCTCGG
CAAGGAGCACTGCATTGGGCGTGGAGTAGCTTTCAATGCTGGGCTTGAAG
GGCATATTGTGACCCTGTCTCTTCTCCAGTGGAGTGAAAAAGTCCGCAG
BS11388.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1082-PA | 1626 | alpha-Est4-RA | 794..1626 | 849..17 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est4-RA | 1749 | CG1082-RA | 852..1686 | 849..15 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7536750..7537584 | 15..849 | 4175 | 100 | Plus |
3R | 32079331 | 3R | 7527941..7528034 | 282..189 | 215 | 81.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:16:30 has no hits.
BS11388.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:34 Download gff for
BS11388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1082-PA | 794..1626 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:37 Download gff for
BS11388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1082-PA | 794..1626 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:16:44 Download gff for
BS11388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est4-RA | 852..1686 | 15..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:15 Download gff for
BS11388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est4-RA | 852..1686 | 15..849 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:15 Download gff for
BS11388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7536750..7537584 | 15..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:16:44 Download gff for
BS11388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3362472..3363306 | 15..849 | 100 | | Plus |
BS11388.5prime Sequence
882 bp (835 high quality bases) assembled on 2006-04-18
> BS11388.5prime
GAAGTTATCAGTCGACATGTCGGACGACTACAACGAAGATGCCCCCGTGG
TGCAGACAACACATGGAAAAGTGAGGGGAATCCTGCTTAAGTCCCTATAT
GACGAACAGTTTTACGCTTTTGATGGCATCCCCTATGCGGTTCCTCCGCT
GGGAACCCTGCGCTTCAAGGAGCCCCATGACCTTAAACCATGGCACGGGA
TTCGCGATTGCTCCAAGCCGCTCAGCAAGTGCCTGCAAGTGAGCACATTA
ACCAAGGAGGTGGAAGGCTCCGAGGATTGCCTTTACCTGAACATATCAGT
AAAAACTCTAAACGGTGATCCCATGCCTGTGATGGTCTACATCCATGGAG
GCGCTTTTAAGGGCGGAGATTCTTCGAGACGCGCCTGGGGTCCCGACTAT
TTTATGAAGGAAAACGTTGTGTACATAAGCATTGGTCATCGACTGGGACC
CTTAGGTTTCCTCAGTCTCAATGATCCCGATCTTGAAGTTCCTGGCAATG
CTGGATTGAAAGACGTTATCTTGGCCCTCCGTTGGATCAGGGCAAACGCG
GCCAACTTCAATGGTGACCCCGAGAGAATAACCATCTTTGGTCACAGCTC
TGGCAGCATGACCGTTCAACTGTTGCTGGCAAGTCCACAATCAGAAGGAC
TCTTCCATAGGGCCATACTATTGGCAGGATTCTCAATGGAGCTGAATCGC
CTGCCCCAAATGGAGTACCGTCTGGCCAAGCATTTGGGCTACGAGGGAGA
TAATGTCGATAGCCAGGTCTTGGAGTTCCTCTTGAAGGCAGATCCGGCTC
TAATCGTCTCTGCGGACTTTTTCACTCCACTGGAGAAGAGACAGGGTCAC
AATATGCCCTTCAAGCCCAGCATTGAAAGCTA
BS11388.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1082-PA | 1626 | alpha-Est4-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est4-RA | 1749 | CG1082-RA | 59..924 | 17..882 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7537512..7537940 | 882..454 | 2145 | 100 | Minus |
3R | 32079331 | 3R | 7538205..7538485 | 311..31 | 1390 | 99.6 | Minus |
3R | 32079331 | 3R | 7537999..7538148 | 457..308 | 750 | 100 | Minus |
3R | 32079331 | 3R | 7527121..7527470 | 472..838 | 345 | 73.6 | Plus |
3R | 32079331 | 3R | 7526464..7526735 | 42..306 | 290 | 74.6 | Plus |
3R | 32079331 | 3R | 7526849..7526966 | 332..449 | 215 | 78.8 | Plus |
Blast to na_te.dros performed 2015-02-12 05:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\BuT4 | 1447 | Dbuz\BuT4 BUT4 1447bp | 564..614 | 391..436 | 109 | 72.5 | Plus |
BS11388.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:36 Download gff for
BS11388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1082-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:38 Download gff for
BS11388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1082-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:31 Download gff for
BS11388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est4-RA | 53..923 | 8..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:15 Download gff for
BS11388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est4-RA | 53..923 | 8..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:15 Download gff for
BS11388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7537513..7537938 | 456..881 | 100 | <- | Minus |
3R | 7538001..7538148 | 308..455 | 100 | <- | Minus |
3R | 7538209..7538485 | 31..307 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:31 Download gff for
BS11388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3363235..3363660 | 456..881 | 100 | <- | Minus |
arm_3R | 3363723..3363870 | 308..455 | 100 | <- | Minus |
arm_3R | 3363931..3364207 | 31..307 | 100 | <- | Minus |
BS11388.complete Sequence
1658 bp assembled on 2006-11-01
GenBank Submission: FJ636848
> BS11388.complete
GAAGTTATCAGTCGACATGTCGGACGACTACAACGAAGATGCCCCCGTGG
TGCAGACAACACATGGAAAAGTGAGGGGAATCCTGCTTAAGTCCCTATAT
GACGAACAGTTTTACGCTTTTGATGGCATCCCCTATGCGGTTCCTCCGCT
GGGAACCCTGCGCTTCAAGGAGCCCCATGACCTTAAACCATGGCACGGGA
TTCGCGATTGCTCCAAGCCGCTCAGCAAGTGCCTGCAAGTGAGCACATTA
ACCAAGGAGGTGGAAGGCTCCGAGGATTGCCTTTACCTGAACATATCAGT
AAAAACTCTAAACGGTGATCCCATGCCTGTGATGGTCTACATCCATGGAG
GCGCTTTTAAGGGCGGAGATTCTTCGAGACGCGCCTGGGGTCCCGACTAT
TTTATGAAGGAAAACGTTGTGTACATAAGCATTGGTCATCGACTGGGACC
CTTAGGTTTCCTCAGTCTCAATGATCCCGATCTTGAAGTTCCTGGCAATG
CTGGATTGAAAGACGTTATCTTGGCCCTCCGTTGGATCAGGGCAAACGCG
GCCAACTTCAATGGTGACCCCGAGAGAATAACCATCTTTGGTCACAGCTC
TGGCAGCATGACCGTTCAACTGTTGCTGGCAAGTCCACAATCAGAAGGAC
TCTTCCATAGGGCCATACTATTGGCAGGATTCTCAATGGAGCTGAATCGC
CTGCCCCAAATGGAGTACCGTCTGGCCAAGCATTTGGGCTACGAGGGAGA
TAATGTCGATAGCCAGGTCTTGGAGTTCCTCTTGAAGGCAGATCCGGCTC
TAATCGTCTCTGCGGACTTTTTCACTCCACTGGAGAAGAGACAGGGTCAC
AATATGCCCTTCAAGCCCAGCATTGAAAGCTACTCCACGCCCAATGCAGT
GCTCCTTGCCGAGCCTATTGACCTCCAGCGAACCACGTGGAGCAATCGTA
TTCCCATCATCTTAGGCGCCAACAGTGGCGAGGGGATGTCGATTTTTAGC
TTCGTAAAAATGAACCCCTCGTGGCTAAAGGAATTTCAATGCAACCCGGA
GCGGGTGCTGCCTTGGACCCTGAGAAATCGCTGTGATCCTGGACAGCGGC
GCCAACTGGGTCAAGCATTGATCCATCACTTCTGCGAGGCGCACGGCCAT
GAGTTGACTGTAGATCACACAAACGGATTGGTGGAGCTCTTCACTCACGG
CTTTGTGCACGCTATGGACCGACTAATCCAATCCAGACTGACTTACGGCC
AGGCGCCCACTTACCTTTATCGATTTGACTTCGACTCGCCGGATTTTAAT
TTCTACCGAATTCGCTTTATGGGCAAGGAACAGCGGGGAGTTGGACACGT
GGATGAACTGGGATACATTTTCAAGCTGCCAGCTACCTTCAAATTGGACA
AGTCTCGACCAGAGTTCACAGCCATTCGCCGATTGGTGGCCATGTTTGTC
CAATTCGCCGCCACCTCGGACCCAAATGCTCCACTCACTAAATCTCTGGT
GGATTGGAAGCCCGTAACTCGATTCGGAAAACGGATGGTCCTAAATATAA
GCGAGGAATTGAAGTTTATTCCGCAGCCAGAAATGCCGAAGTTGAAGTTT
TTCGATCGCCTATACGAAATGGCTGGAGTACCCTTATTCTAAAAGCTTTC
TAGACCAT
BS11388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est4-RA | 1626 | CG1082-PA | 1..1626 | 17..1642 | 8130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est4-RA | 1749 | CG1082-RA | 59..1686 | 17..1644 | 8140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7536750..7537940 | 1644..454 | 5955 | 100 | Minus |
3R | 32079331 | 3R | 7538205..7538485 | 311..31 | 1390 | 99.6 | Minus |
3R | 32079331 | 3R | 7537999..7538148 | 457..308 | 750 | 100 | Minus |
3R | 32079331 | 3R | 7527121..7527470 | 472..838 | 345 | 73.6 | Plus |
3R | 32079331 | 3R | 7526464..7526735 | 42..306 | 290 | 74.6 | Plus |
3R | 32079331 | 3R | 7526849..7526966 | 332..449 | 215 | 78.8 | Plus |
3R | 32079331 | 3R | 7527941..7528034 | 1377..1470 | 215 | 81.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:35:06 has no hits.
BS11388.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:13 Download gff for
BS11388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est4-RA | 1..1626 | 17..1642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:24 Download gff for
BS11388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est4-RA | 29..1662 | 8..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:05:28 Download gff for
BS11388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est4-RA | 59..1682 | 17..1640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:14 Download gff for
BS11388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est4-RA | 29..1662 | 8..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:46 Download gff for
BS11388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est4-RA | 59..1682 | 17..1640 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:46 Download gff for
BS11388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7538209..7538485 | 31..307 | 100 | <- | Minus |
3R | 7536754..7537938 | 456..1640 | 100 | <- | Minus |
3R | 7538001..7538148 | 308..455 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:05:28 Download gff for
BS11388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3362476..3363660 | 456..1640 | 100 | <- | Minus |
arm_3R | 3363723..3363870 | 308..455 | 100 | <- | Minus |
arm_3R | 3363931..3364207 | 31..307 | 100 | <- | Minus |
BS11388.pep Sequence
Translation from 16 to 1641
> BS11388.pep
MSDDYNEDAPVVQTTHGKVRGILLKSLYDEQFYAFDGIPYAVPPLGTLRF
KEPHDLKPWHGIRDCSKPLSKCLQVSTLTKEVEGSEDCLYLNISVKTLNG
DPMPVMVYIHGGAFKGGDSSRRAWGPDYFMKENVVYISIGHRLGPLGFLS
LNDPDLEVPGNAGLKDVILALRWIRANAANFNGDPERITIFGHSSGSMTV
QLLLASPQSEGLFHRAILLAGFSMELNRLPQMEYRLAKHLGYEGDNVDSQ
VLEFLLKADPALIVSADFFTPLEKRQGHNMPFKPSIESYSTPNAVLLAEP
IDLQRTTWSNRIPIILGANSGEGMSIFSFVKMNPSWLKEFQCNPERVLPW
TLRNRCDPGQRRQLGQALIHHFCEAHGHELTVDHTNGLVELFTHGFVHAM
DRLIQSRLTYGQAPTYLYRFDFDSPDFNFYRIRFMGKEQRGVGHVDELGY
IFKLPATFKLDKSRPEFTAIRRLVAMFVQFAATSDPNAPLTKSLVDWKPV
TRFGKRMVLNISEELKFIPQPEMPKLKFFDRLYEMAGVPLF*
BS11388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est4-PA | 541 | CG1082-PA | 1..541 | 1..541 | 2878 | 100 | Plus |
alpha-Est5-PA | 542 | CG1089-PA | 17..537 | 17..534 | 1071 | 40.3 | Plus |
alpha-Est5-PB | 543 | CG1089-PB | 18..538 | 17..534 | 1071 | 40.3 | Plus |
alpha-Est3-PD | 543 | CG1257-PD | 6..543 | 12..537 | 990 | 39 | Plus |
alpha-Est3-PB | 543 | CG1257-PB | 6..543 | 12..537 | 990 | 39 | Plus |