Clone BS11388 Report

Search the DGRC for BS11388

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:88
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est4-RA
Protein status:BS11388.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11388.3prime Sequence

849 bp (796 high quality bases) assembled on 2006-04-18

> BS11388.3prime
ATGGTCTAGAAAGCTTTTAGAATAAGGGTACTCCAGCCATTTCGTATAGG
CGATCGAAAAACTTCAACTTCGGCATTTCTGGCTGCGGAATAAACTTCAA
TTCCTCGCTTATATTTAGGACCATCCGTTTTCCGAATCGAGTTACGGGCT
TCCAATCCACCAGAGATTTAGTGAGTGGAGCATTTGGGTCCGAGGTGGCG
GCGAATTGGACAAACATGGCCACCAATCGGCGAATGGCTGTGAACTCTGG
TCGAGACTTGTCCAATTTGAAGGTAGCTGGCAGCTTGAAAATGTATCCCA
GTTCATCCACGTGTCCAACTCCCCGCTGTTCCTTGCCCATAAAGCGAATT
CGGTAGAAATTAAAATCCGGCGAGTCGAAGTCAAATCGATAAAGGTAAGT
GGGCGCCTGGCCGTAAGTCAGTCTGGATTGGATTAGTCGGTCCATAGCGT
GCACAAAGCCGTGAGTGAAGAGCTCCACCAATCCGTTTGTGTGATCTACA
GTCAACTCATGGCCGTGCGCCTCGCAGAAGTGATGGATCAATGCTTGACC
CAGTTGGCGCCGCTGTCCAGGATCACAGCGATTTCTCAGGGTCCAAGGCA
GCACCCGCTCCGGGTTGCATTGAAATTCCTTTAGCCACGAGGGGTTCATT
TTTACGAAGCTAAAAATCGACATCCCCTCGCCACTGTTGGCGCCTAAGAT
GATGGGAATACGATTGCTCCACGTGGTTCGCTGGAGGTCAATAGGCTCGG
CAAGGAGCACTGCATTGGGCGTGGAGTAGCTTTCAATGCTGGGCTTGAAG
GGCATATTGTGACCCTGTCTCTTCTCCAGTGGAGTGAAAAAGTCCGCAG

BS11388.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1082-PA 1626 alpha-Est4-RA 794..1626 849..17 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-RA 1749 CG1082-RA 852..1686 849..15 4175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7536750..7537584 15..849 4175 100 Plus
3R 32079331 3R 7527941..7528034 282..189 215 81.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:16:30 has no hits.

BS11388.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:34 Download gff for BS11388.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1082-PA 794..1626 17..849 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:37 Download gff for BS11388.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1082-PA 794..1626 17..849 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:16:44 Download gff for BS11388.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 852..1686 15..849 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:15 Download gff for BS11388.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 852..1686 15..849 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:15 Download gff for BS11388.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7536750..7537584 15..849 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:16:44 Download gff for BS11388.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3362472..3363306 15..849 100   Plus

BS11388.5prime Sequence

882 bp (835 high quality bases) assembled on 2006-04-18

> BS11388.5prime
GAAGTTATCAGTCGACATGTCGGACGACTACAACGAAGATGCCCCCGTGG
TGCAGACAACACATGGAAAAGTGAGGGGAATCCTGCTTAAGTCCCTATAT
GACGAACAGTTTTACGCTTTTGATGGCATCCCCTATGCGGTTCCTCCGCT
GGGAACCCTGCGCTTCAAGGAGCCCCATGACCTTAAACCATGGCACGGGA
TTCGCGATTGCTCCAAGCCGCTCAGCAAGTGCCTGCAAGTGAGCACATTA
ACCAAGGAGGTGGAAGGCTCCGAGGATTGCCTTTACCTGAACATATCAGT
AAAAACTCTAAACGGTGATCCCATGCCTGTGATGGTCTACATCCATGGAG
GCGCTTTTAAGGGCGGAGATTCTTCGAGACGCGCCTGGGGTCCCGACTAT
TTTATGAAGGAAAACGTTGTGTACATAAGCATTGGTCATCGACTGGGACC
CTTAGGTTTCCTCAGTCTCAATGATCCCGATCTTGAAGTTCCTGGCAATG
CTGGATTGAAAGACGTTATCTTGGCCCTCCGTTGGATCAGGGCAAACGCG
GCCAACTTCAATGGTGACCCCGAGAGAATAACCATCTTTGGTCACAGCTC
TGGCAGCATGACCGTTCAACTGTTGCTGGCAAGTCCACAATCAGAAGGAC
TCTTCCATAGGGCCATACTATTGGCAGGATTCTCAATGGAGCTGAATCGC
CTGCCCCAAATGGAGTACCGTCTGGCCAAGCATTTGGGCTACGAGGGAGA
TAATGTCGATAGCCAGGTCTTGGAGTTCCTCTTGAAGGCAGATCCGGCTC
TAATCGTCTCTGCGGACTTTTTCACTCCACTGGAGAAGAGACAGGGTCAC
AATATGCCCTTCAAGCCCAGCATTGAAAGCTA

BS11388.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1082-PA 1626 alpha-Est4-RA 1..866 17..882 4330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-RA 1749 CG1082-RA 59..924 17..882 4330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7537512..7537940 882..454 2145 100 Minus
3R 32079331 3R 7538205..7538485 311..31 1390 99.6 Minus
3R 32079331 3R 7537999..7538148 457..308 750 100 Minus
3R 32079331 3R 7527121..7527470 472..838 345 73.6 Plus
3R 32079331 3R 7526464..7526735 42..306 290 74.6 Plus
3R 32079331 3R 7526849..7526966 332..449 215 78.8 Plus
Blast to na_te.dros performed 2015-02-12 05:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT4 1447 Dbuz\BuT4 BUT4 1447bp 564..614 391..436 109 72.5 Plus

BS11388.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:36 Download gff for BS11388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1082-PA 1..865 17..881 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:38 Download gff for BS11388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1082-PA 1..865 17..881 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:31 Download gff for BS11388.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 53..923 8..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:15 Download gff for BS11388.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 53..923 8..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:15 Download gff for BS11388.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7537513..7537938 456..881 100 <- Minus
3R 7538001..7538148 308..455 100 <- Minus
3R 7538209..7538485 31..307 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:31 Download gff for BS11388.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3363235..3363660 456..881 100 <- Minus
arm_3R 3363723..3363870 308..455 100 <- Minus
arm_3R 3363931..3364207 31..307 100 <- Minus

BS11388.complete Sequence

1658 bp assembled on 2006-11-01

GenBank Submission: FJ636848

> BS11388.complete
GAAGTTATCAGTCGACATGTCGGACGACTACAACGAAGATGCCCCCGTGG
TGCAGACAACACATGGAAAAGTGAGGGGAATCCTGCTTAAGTCCCTATAT
GACGAACAGTTTTACGCTTTTGATGGCATCCCCTATGCGGTTCCTCCGCT
GGGAACCCTGCGCTTCAAGGAGCCCCATGACCTTAAACCATGGCACGGGA
TTCGCGATTGCTCCAAGCCGCTCAGCAAGTGCCTGCAAGTGAGCACATTA
ACCAAGGAGGTGGAAGGCTCCGAGGATTGCCTTTACCTGAACATATCAGT
AAAAACTCTAAACGGTGATCCCATGCCTGTGATGGTCTACATCCATGGAG
GCGCTTTTAAGGGCGGAGATTCTTCGAGACGCGCCTGGGGTCCCGACTAT
TTTATGAAGGAAAACGTTGTGTACATAAGCATTGGTCATCGACTGGGACC
CTTAGGTTTCCTCAGTCTCAATGATCCCGATCTTGAAGTTCCTGGCAATG
CTGGATTGAAAGACGTTATCTTGGCCCTCCGTTGGATCAGGGCAAACGCG
GCCAACTTCAATGGTGACCCCGAGAGAATAACCATCTTTGGTCACAGCTC
TGGCAGCATGACCGTTCAACTGTTGCTGGCAAGTCCACAATCAGAAGGAC
TCTTCCATAGGGCCATACTATTGGCAGGATTCTCAATGGAGCTGAATCGC
CTGCCCCAAATGGAGTACCGTCTGGCCAAGCATTTGGGCTACGAGGGAGA
TAATGTCGATAGCCAGGTCTTGGAGTTCCTCTTGAAGGCAGATCCGGCTC
TAATCGTCTCTGCGGACTTTTTCACTCCACTGGAGAAGAGACAGGGTCAC
AATATGCCCTTCAAGCCCAGCATTGAAAGCTACTCCACGCCCAATGCAGT
GCTCCTTGCCGAGCCTATTGACCTCCAGCGAACCACGTGGAGCAATCGTA
TTCCCATCATCTTAGGCGCCAACAGTGGCGAGGGGATGTCGATTTTTAGC
TTCGTAAAAATGAACCCCTCGTGGCTAAAGGAATTTCAATGCAACCCGGA
GCGGGTGCTGCCTTGGACCCTGAGAAATCGCTGTGATCCTGGACAGCGGC
GCCAACTGGGTCAAGCATTGATCCATCACTTCTGCGAGGCGCACGGCCAT
GAGTTGACTGTAGATCACACAAACGGATTGGTGGAGCTCTTCACTCACGG
CTTTGTGCACGCTATGGACCGACTAATCCAATCCAGACTGACTTACGGCC
AGGCGCCCACTTACCTTTATCGATTTGACTTCGACTCGCCGGATTTTAAT
TTCTACCGAATTCGCTTTATGGGCAAGGAACAGCGGGGAGTTGGACACGT
GGATGAACTGGGATACATTTTCAAGCTGCCAGCTACCTTCAAATTGGACA
AGTCTCGACCAGAGTTCACAGCCATTCGCCGATTGGTGGCCATGTTTGTC
CAATTCGCCGCCACCTCGGACCCAAATGCTCCACTCACTAAATCTCTGGT
GGATTGGAAGCCCGTAACTCGATTCGGAAAACGGATGGTCCTAAATATAA
GCGAGGAATTGAAGTTTATTCCGCAGCCAGAAATGCCGAAGTTGAAGTTT
TTCGATCGCCTATACGAAATGGCTGGAGTACCCTTATTCTAAAAGCTTTC
TAGACCAT

BS11388.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-RA 1626 CG1082-PA 1..1626 17..1642 8130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-RA 1749 CG1082-RA 59..1686 17..1644 8140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7536750..7537940 1644..454 5955 100 Minus
3R 32079331 3R 7538205..7538485 311..31 1390 99.6 Minus
3R 32079331 3R 7537999..7538148 457..308 750 100 Minus
3R 32079331 3R 7527121..7527470 472..838 345 73.6 Plus
3R 32079331 3R 7526464..7526735 42..306 290 74.6 Plus
3R 32079331 3R 7526849..7526966 332..449 215 78.8 Plus
3R 32079331 3R 7527941..7528034 1377..1470 215 81.9 Plus
Blast to na_te.dros performed on 2014-11-27 13:35:06 has no hits.

BS11388.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:13 Download gff for BS11388.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 1..1626 17..1642 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:24 Download gff for BS11388.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 29..1662 8..1644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:05:28 Download gff for BS11388.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 59..1682 17..1640 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:14 Download gff for BS11388.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 29..1662 8..1644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:46 Download gff for BS11388.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 59..1682 17..1640 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:46 Download gff for BS11388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7538209..7538485 31..307 100 <- Minus
3R 7536754..7537938 456..1640 100 <- Minus
3R 7538001..7538148 308..455 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:05:28 Download gff for BS11388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3362476..3363660 456..1640 100 <- Minus
arm_3R 3363723..3363870 308..455 100 <- Minus
arm_3R 3363931..3364207 31..307 100 <- Minus

BS11388.pep Sequence

Translation from 16 to 1641

> BS11388.pep
MSDDYNEDAPVVQTTHGKVRGILLKSLYDEQFYAFDGIPYAVPPLGTLRF
KEPHDLKPWHGIRDCSKPLSKCLQVSTLTKEVEGSEDCLYLNISVKTLNG
DPMPVMVYIHGGAFKGGDSSRRAWGPDYFMKENVVYISIGHRLGPLGFLS
LNDPDLEVPGNAGLKDVILALRWIRANAANFNGDPERITIFGHSSGSMTV
QLLLASPQSEGLFHRAILLAGFSMELNRLPQMEYRLAKHLGYEGDNVDSQ
VLEFLLKADPALIVSADFFTPLEKRQGHNMPFKPSIESYSTPNAVLLAEP
IDLQRTTWSNRIPIILGANSGEGMSIFSFVKMNPSWLKEFQCNPERVLPW
TLRNRCDPGQRRQLGQALIHHFCEAHGHELTVDHTNGLVELFTHGFVHAM
DRLIQSRLTYGQAPTYLYRFDFDSPDFNFYRIRFMGKEQRGVGHVDELGY
IFKLPATFKLDKSRPEFTAIRRLVAMFVQFAATSDPNAPLTKSLVDWKPV
TRFGKRMVLNISEELKFIPQPEMPKLKFFDRLYEMAGVPLF*

BS11388.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-PA 541 CG1082-PA 1..541 1..541 2878 100 Plus
alpha-Est5-PA 542 CG1089-PA 17..537 17..534 1071 40.3 Plus
alpha-Est5-PB 543 CG1089-PB 18..538 17..534 1071 40.3 Plus
alpha-Est3-PD 543 CG1257-PD 6..543 12..537 990 39 Plus
alpha-Est3-PB 543 CG1257-PB 6..543 12..537 990 39 Plus