Clone Sequence Records
BS11390.3prime Sequence
860 bp (803 high quality bases) assembled on 2006-04-18
> BS11390.3prime
ATGGTCTAGAAAGCTTTCACTTCTGACCCGCGTAGGCCAAGTCCTGGGCA
TCCTGCGGCTCTTGCGAGGATCGGGCCCAGGCATGAGGATCCCAGGCGGG
CGATGGGTGCTCCAGGTGCTCGATGTGCTCCACGGGCAGATCCACGTGGT
GATCGATGTGGTGCTCCAGATGATGATCGATGTGATGCGGCACTATGTGC
TCGATGTGGTGGGGCACCACGTGCTCGATGTGGTGGGGCACCACGTGCTC
AATGTGATGCGGCACCACATGATCCACGTGATGGGGATAGTGCACCACCT
CGTAGTTGACAATCTTGGGCTTGGCAATCTTGAAAATAACCAAGGCTCCA
GACAGCACCAATGAGAGCAGGCCCAAGGTCATGGCCTTCCAGGTCTTTAG
GGCAATGAGTCCCAAGGCCAGTGGCACCAGCACAGTGGTCTTCAGTTTCA
GGCCCAGAAGGAAGGGCAGAACTGCCTTGCGGATCATGCCACGTCCTTCG
TTAGCAGCTGCCAGGGGAACTAATCCTCCCTGAGTAAGCGGATTCGACAT
GAGGAAGTCGGGCACCAGGGAGCGGGCTTCCGAGGTGCGGAAGTACTCCG
GAGCCTGGATCCTCAGCGAGTGGCTGCCCAGATAGCTGTCGATGTCGTCG
AAGAGGCGCTCCTCCGGGTTCATGGATCGGGACTCGACCTTCTCCGCGGT
ACGGACAATCGACAGGCGCTCGGTGATGCGCACCTCCGGCTGCCGGAGGG
CAGAGTTGAACCACTGCAGGGCCTTGGGACGCACGCAGGAAACACTGAGG
TCCTTAANGCAGCCATGGTACATGTCCAGGGCTAGTTGCGTGGCGGACTG
GGGCGCCACC
BS11390.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1169-PA | 921 | Osi18-RA | 78..921 | 860..17 | 4201 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-RA | 1270 | CG1169-RA | 181..1025 | 860..16 | 4214 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6331083..6331564 | 497..16 | 2410 | 100 | Minus |
3R | 32079331 | 3R | 6330428..6330793 | 860..495 | 1819 | 99.7 | Minus |
3R | 32079331 | 3R | 6331297..6331379 | 259..177 | 250 | 86.7 | Minus |
3R | 32079331 | 3R | 6331321..6331403 | 283..201 | 250 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:39:05 has no hits.
BS11390.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:39 Download gff for
BS11390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-PA | 78..921 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:42 Download gff for
BS11390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1169-PA | 78..921 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:02:39 Download gff for
BS11390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 181..1025 | 16..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:32 Download gff for
BS11390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 181..1025 | 16..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:32 Download gff for
BS11390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6330428..6330792 | 496..860 | 99 | -> | Minus |
3R | 6331085..6331564 | 16..495 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:02:39 Download gff for
BS11390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2156150..2156514 | 496..860 | 99 | -> | Minus |
arm_3R | 2156807..2157286 | 16..495 | 100 | | Minus |
BS11390.5prime Sequence
939 bp (844 high quality bases) assembled on 2006-04-18
> BS11390.5prime
GAAGTTATCAGTCGACATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCC
TTGCGGCGCTGTCCACCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCG
CCCCAGTCCGCCACGCAACTAGCCCTGGACATGTACCATGGCTGCCTTAA
GGACCTCAGTGTTTCCTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACT
CTGCCCTCCGGCAGCCGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTC
CGTACCGCGGAGAAGGTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCT
CTTCGACGACATCGACAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGG
CTCCGGAGTACTTCCGCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTC
CTCATGTCGAATCCGCTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGC
TAACGAAGGACGTGGCATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGG
GCCTGAAACTGAAGACCACTGTGCTGGTGCCACTGGCCTTGGGACTCATT
GCCCTAAAGACCTGGAAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCT
GTCTGGAGCCTTGGTTATTTTCAAGATTGCCAAGCCCAAGATTGTCAACT
ACGAGGTGGTGCACTATCCCCATCACGTGGATCATGTGGTGCCGCATCAC
ATTGAGCACGTGGTGCCCCACCACATCGAGCACGTGGTGCCCCACCACAT
CGAGCACATAGTGCCGCATCACATCGATCATCATCTGGAGCACCACATCG
ATCACCACGTGGATCTGCCCGTGGAGCACATCGAGCACCTGGAGCACCCA
TCGCCCGCCTGGGATCCTCATGCCTGGGCCCGATCCTCGCAAGAGCCGCA
GGATGCCCAGGACTTGGCCTACGCGGGTCAGAAGTGAAA
BS11390.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1169-PA | 921 | Osi18-RA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-RA | 1270 | CG1169-RA | 104..1025 | 17..938 | 4610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6331083..6331564 | 457..938 | 2410 | 100 | Plus |
3R | 32079331 | 3R | 6330351..6330793 | 17..459 | 2215 | 100 | Plus |
3R | 32079331 | 3R | 6331297..6331379 | 695..777 | 250 | 86.7 | Plus |
3R | 32079331 | 3R | 6331321..6331403 | 671..753 | 250 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:22:32 has no hits.
BS11390.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:40 Download gff for
BS11390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-PA | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:45 Download gff for
BS11390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1169-PA | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:34 Download gff for
BS11390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 101..1023 | 10..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:09 Download gff for
BS11390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 101..1023 | 10..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:09 Download gff for
BS11390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6330348..6330792 | 10..458 | 99 | -> | Plus |
3R | 6331085..6331562 | 459..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:34 Download gff for
BS11390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2156070..2156514 | 10..458 | 99 | -> | Plus |
arm_3R | 2156807..2157284 | 459..936 | 100 | | Plus |
BS11390.complete Sequence
953 bp assembled on 2006-11-01
GenBank Submission: FJ636850
> BS11390.complete
GAAGTTATCAGTCGACATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCC
TTGCGGCGCTGTCCACCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCG
CCCCAGTCCGCCACGCAACTAGCCCTGGACATGTACCATGGCTGCCTTAA
GGACCTCAGTGTTTCCTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACT
CTGCCCTCCGGCAGCCGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTC
CGTACCGCGGAGAAGGTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCT
CTTCGACGACATCGACAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGG
CTCCGGAGTACTTCCGCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTC
CTCATGTCGAATCCGCTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGC
TAACGAAGGACGTGGCATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGG
GCCTGAAACTGAAGACCACTGTGCTGGTGCCACTGGCCTTGGGACTCATT
GCCCTAAAGACCTGGAAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCT
GTCTGGAGCCTTGGTTATTTTCAAGATTGCCAAGCCCAAGATTGTCAACT
ACGAGGTGGTGCACTATCCCCATCACGTGGATCATGTGGTGCCGCATCAC
ATTGAGCACGTGGTGCCCCACCACATCGAGCACGTGGTGCCCCACCACAT
CGAGCACATAGTGCCGCATCACATCGATCATCATCTGGAGCACCACATCG
ATCACCACGTGGATCTGCCCGTGGAGCACATCGAGCACCTGGAGCACCCA
TCGCCCGCCTGGGATCCTCATGCCTGGGCCCGATCCTCGCAAGAGCCGCA
GGATGCCCAGGACTTGGCCTACGCGGGTCAGAAGTGAAAGCTTTCTAGAC
CAT
BS11390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-RA | 921 | CG1169-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Osi18-RA | 921 | CG1169-PA | 655..737 | 695..777 | 250 | 86.7 | Plus |
Osi18-RA | 921 | CG1169-PA | 679..761 | 671..753 | 250 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-RA | 1270 | CG1169-RA | 104..1025 | 17..938 | 4610 | 100 | Plus |
Osi18-RA | 1270 | CG1169-RA | 758..840 | 695..777 | 250 | 86.7 | Plus |
Osi18-RA | 1270 | CG1169-RA | 782..864 | 671..753 | 250 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6331083..6331564 | 457..938 | 2410 | 100 | Plus |
3R | 32079331 | 3R | 6330351..6330793 | 17..459 | 2215 | 100 | Plus |
3R | 32079331 | 3R | 6331297..6331379 | 695..777 | 250 | 86.7 | Plus |
3R | 32079331 | 3R | 6331321..6331403 | 671..753 | 250 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:38:02 has no hits.
BS11390.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:17 Download gff for
BS11390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:28 Download gff for
BS11390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 99..1023 | 10..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:48 Download gff for
BS11390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 104..1023 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:18 Download gff for
BS11390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 99..1023 | 10..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:08 Download gff for
BS11390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 104..1023 | 17..936 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:08 Download gff for
BS11390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6330351..6330792 | 17..458 | 100 | -> | Plus |
3R | 6331085..6331562 | 459..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:48 Download gff for
BS11390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2156073..2156514 | 17..458 | 100 | -> | Plus |
arm_3R | 2156807..2157284 | 459..936 | 100 | | Plus |
BS11390.pep Sequence
Translation from 16 to 936
> BS11390.pep
MKSTAACLIVALAALSTAHSAPTEGQVAPQSATQLALDMYHGCLKDLSVS
CVRPKALQWFNSALRQPEVRITERLSIVRTAEKVESRSMNPEERLFDDID
SYLGSHSLRIQAPEYFRTSEARSLVPDFLMSNPLTQGGLVPLAAANEGRG
MIRKAVLPFLLGLKLKTTVLVPLALGLIALKTWKAMTLGLLSLVLSGALV
IFKIAKPKIVNYEVVHYPHHVDHVVPHHIEHVVPHHIEHVVPHHIEHIVP
HHIDHHLEHHIDHHVDLPVEHIEHLEHPSPAWDPHAWARSSQEPQDAQDL
AYAGQK*
BS11390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-PA | 306 | CG1169-PA | 1..306 | 1..306 | 1609 | 100 | Plus |
Osi9-PA | 233 | CG15592-PA | 6..206 | 7..220 | 213 | 29 | Plus |
Osi7-PA | 288 | CG1153-PA | 13..235 | 9..220 | 190 | 29.5 | Plus |
Osi19-PB | 257 | CG15189-PB | 7..225 | 8..227 | 178 | 25.2 | Plus |
Osi19-PA | 266 | CG15189-PA | 7..234 | 8..227 | 169 | 24.3 | Plus |