Clone BS11390 Report

Search the DGRC for BS11390

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptOsi18-RA
Protein status:BS11390.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11390.3prime Sequence

860 bp (803 high quality bases) assembled on 2006-04-18

> BS11390.3prime
ATGGTCTAGAAAGCTTTCACTTCTGACCCGCGTAGGCCAAGTCCTGGGCA
TCCTGCGGCTCTTGCGAGGATCGGGCCCAGGCATGAGGATCCCAGGCGGG
CGATGGGTGCTCCAGGTGCTCGATGTGCTCCACGGGCAGATCCACGTGGT
GATCGATGTGGTGCTCCAGATGATGATCGATGTGATGCGGCACTATGTGC
TCGATGTGGTGGGGCACCACGTGCTCGATGTGGTGGGGCACCACGTGCTC
AATGTGATGCGGCACCACATGATCCACGTGATGGGGATAGTGCACCACCT
CGTAGTTGACAATCTTGGGCTTGGCAATCTTGAAAATAACCAAGGCTCCA
GACAGCACCAATGAGAGCAGGCCCAAGGTCATGGCCTTCCAGGTCTTTAG
GGCAATGAGTCCCAAGGCCAGTGGCACCAGCACAGTGGTCTTCAGTTTCA
GGCCCAGAAGGAAGGGCAGAACTGCCTTGCGGATCATGCCACGTCCTTCG
TTAGCAGCTGCCAGGGGAACTAATCCTCCCTGAGTAAGCGGATTCGACAT
GAGGAAGTCGGGCACCAGGGAGCGGGCTTCCGAGGTGCGGAAGTACTCCG
GAGCCTGGATCCTCAGCGAGTGGCTGCCCAGATAGCTGTCGATGTCGTCG
AAGAGGCGCTCCTCCGGGTTCATGGATCGGGACTCGACCTTCTCCGCGGT
ACGGACAATCGACAGGCGCTCGGTGATGCGCACCTCCGGCTGCCGGAGGG
CAGAGTTGAACCACTGCAGGGCCTTGGGACGCACGCAGGAAACACTGAGG
TCCTTAANGCAGCCATGGTACATGTCCAGGGCTAGTTGCGTGGCGGACTG
GGGCGCCACC

BS11390.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1169-PA 921 Osi18-RA 78..921 860..17 4201 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-RA 1270 CG1169-RA 181..1025 860..16 4214 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6331083..6331564 497..16 2410 100 Minus
3R 32079331 3R 6330428..6330793 860..495 1819 99.7 Minus
3R 32079331 3R 6331297..6331379 259..177 250 86.7 Minus
3R 32079331 3R 6331321..6331403 283..201 250 86.7 Minus
Blast to na_te.dros performed on 2015-02-11 23:39:05 has no hits.

BS11390.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:39 Download gff for BS11390.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-PA 78..921 17..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:42 Download gff for BS11390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1169-PA 78..921 17..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:02:39 Download gff for BS11390.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 181..1025 16..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:32 Download gff for BS11390.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 181..1025 16..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:32 Download gff for BS11390.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6330428..6330792 496..860 99 -> Minus
3R 6331085..6331564 16..495 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:02:39 Download gff for BS11390.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2156150..2156514 496..860 99 -> Minus
arm_3R 2156807..2157286 16..495 100   Minus

BS11390.5prime Sequence

939 bp (844 high quality bases) assembled on 2006-04-18

> BS11390.5prime
GAAGTTATCAGTCGACATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCC
TTGCGGCGCTGTCCACCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCG
CCCCAGTCCGCCACGCAACTAGCCCTGGACATGTACCATGGCTGCCTTAA
GGACCTCAGTGTTTCCTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACT
CTGCCCTCCGGCAGCCGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTC
CGTACCGCGGAGAAGGTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCT
CTTCGACGACATCGACAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGG
CTCCGGAGTACTTCCGCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTC
CTCATGTCGAATCCGCTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGC
TAACGAAGGACGTGGCATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGG
GCCTGAAACTGAAGACCACTGTGCTGGTGCCACTGGCCTTGGGACTCATT
GCCCTAAAGACCTGGAAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCT
GTCTGGAGCCTTGGTTATTTTCAAGATTGCCAAGCCCAAGATTGTCAACT
ACGAGGTGGTGCACTATCCCCATCACGTGGATCATGTGGTGCCGCATCAC
ATTGAGCACGTGGTGCCCCACCACATCGAGCACGTGGTGCCCCACCACAT
CGAGCACATAGTGCCGCATCACATCGATCATCATCTGGAGCACCACATCG
ATCACCACGTGGATCTGCCCGTGGAGCACATCGAGCACCTGGAGCACCCA
TCGCCCGCCTGGGATCCTCATGCCTGGGCCCGATCCTCGCAAGAGCCGCA
GGATGCCCAGGACTTGGCCTACGCGGGTCAGAAGTGAAA

BS11390.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1169-PA 921 Osi18-RA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-RA 1270 CG1169-RA 104..1025 17..938 4610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6331083..6331564 457..938 2410 100 Plus
3R 32079331 3R 6330351..6330793 17..459 2215 100 Plus
3R 32079331 3R 6331297..6331379 695..777 250 86.7 Plus
3R 32079331 3R 6331321..6331403 671..753 250 86.7 Plus
Blast to na_te.dros performed on 2015-02-12 05:22:32 has no hits.

BS11390.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:40 Download gff for BS11390.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-PA 1..920 17..936 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:45 Download gff for BS11390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1169-PA 1..920 17..936 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:34 Download gff for BS11390.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 101..1023 10..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:09 Download gff for BS11390.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 101..1023 10..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:09 Download gff for BS11390.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6330348..6330792 10..458 99 -> Plus
3R 6331085..6331562 459..936 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:34 Download gff for BS11390.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2156070..2156514 10..458 99 -> Plus
arm_3R 2156807..2157284 459..936 100   Plus

BS11390.complete Sequence

953 bp assembled on 2006-11-01

GenBank Submission: FJ636850

> BS11390.complete
GAAGTTATCAGTCGACATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCC
TTGCGGCGCTGTCCACCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCG
CCCCAGTCCGCCACGCAACTAGCCCTGGACATGTACCATGGCTGCCTTAA
GGACCTCAGTGTTTCCTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACT
CTGCCCTCCGGCAGCCGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTC
CGTACCGCGGAGAAGGTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCT
CTTCGACGACATCGACAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGG
CTCCGGAGTACTTCCGCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTC
CTCATGTCGAATCCGCTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGC
TAACGAAGGACGTGGCATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGG
GCCTGAAACTGAAGACCACTGTGCTGGTGCCACTGGCCTTGGGACTCATT
GCCCTAAAGACCTGGAAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCT
GTCTGGAGCCTTGGTTATTTTCAAGATTGCCAAGCCCAAGATTGTCAACT
ACGAGGTGGTGCACTATCCCCATCACGTGGATCATGTGGTGCCGCATCAC
ATTGAGCACGTGGTGCCCCACCACATCGAGCACGTGGTGCCCCACCACAT
CGAGCACATAGTGCCGCATCACATCGATCATCATCTGGAGCACCACATCG
ATCACCACGTGGATCTGCCCGTGGAGCACATCGAGCACCTGGAGCACCCA
TCGCCCGCCTGGGATCCTCATGCCTGGGCCCGATCCTCGCAAGAGCCGCA
GGATGCCCAGGACTTGGCCTACGCGGGTCAGAAGTGAAAGCTTTCTAGAC
CAT

BS11390.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-RA 921 CG1169-PA 1..921 17..937 4605 100 Plus
Osi18-RA 921 CG1169-PA 655..737 695..777 250 86.7 Plus
Osi18-RA 921 CG1169-PA 679..761 671..753 250 86.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-RA 1270 CG1169-RA 104..1025 17..938 4610 100 Plus
Osi18-RA 1270 CG1169-RA 758..840 695..777 250 86.7 Plus
Osi18-RA 1270 CG1169-RA 782..864 671..753 250 86.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6331083..6331564 457..938 2410 100 Plus
3R 32079331 3R 6330351..6330793 17..459 2215 100 Plus
3R 32079331 3R 6331297..6331379 695..777 250 86.7 Plus
3R 32079331 3R 6331321..6331403 671..753 250 86.7 Plus
Blast to na_te.dros performed on 2014-11-27 16:38:02 has no hits.

BS11390.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:17 Download gff for BS11390.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..921 17..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:28 Download gff for BS11390.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 99..1023 10..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:48 Download gff for BS11390.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 104..1023 17..936 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:18 Download gff for BS11390.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 99..1023 10..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:08 Download gff for BS11390.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 104..1023 17..936 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:08 Download gff for BS11390.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6330351..6330792 17..458 100 -> Plus
3R 6331085..6331562 459..936 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:48 Download gff for BS11390.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2156073..2156514 17..458 100 -> Plus
arm_3R 2156807..2157284 459..936 100   Plus

BS11390.pep Sequence

Translation from 16 to 936

> BS11390.pep
MKSTAACLIVALAALSTAHSAPTEGQVAPQSATQLALDMYHGCLKDLSVS
CVRPKALQWFNSALRQPEVRITERLSIVRTAEKVESRSMNPEERLFDDID
SYLGSHSLRIQAPEYFRTSEARSLVPDFLMSNPLTQGGLVPLAAANEGRG
MIRKAVLPFLLGLKLKTTVLVPLALGLIALKTWKAMTLGLLSLVLSGALV
IFKIAKPKIVNYEVVHYPHHVDHVVPHHIEHVVPHHIEHVVPHHIEHIVP
HHIDHHLEHHIDHHVDLPVEHIEHLEHPSPAWDPHAWARSSQEPQDAQDL
AYAGQK*

BS11390.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-PA 306 CG1169-PA 1..306 1..306 1609 100 Plus
Osi9-PA 233 CG15592-PA 6..206 7..220 213 29 Plus
Osi7-PA 288 CG1153-PA 13..235 9..220 190 29.5 Plus
Osi19-PB 257 CG15189-PB 7..225 8..227 178 25.2 Plus
Osi19-PA 266 CG15189-PA 7..234 8..227 169 24.3 Plus