Clone BS11391 Report

Search the DGRC for BS11391

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptObp99c-RA
Protein status:BS11391.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11391.3prime Sequence

486 bp (485 high quality bases) assembled on 2006-04-18

> BS11391.3prime
ATGGTCTAGAAAGCTTCTAGGCGGCCTTCTTTTTGGCCTCCTCCGCCTTG
GCCTTCACGAAGGCCCTGACCTTGTCGCCGATCTTACTGGCCATCATGCA
CTGGTGTCCGCGAAAGGCCCACACATCCGTGGGATTCTTCTGCGCGTTGT
CGTCCACGCAGCTCTGGGCGATCTGAAGGGCCTCCTCCTCGGACAGGTCC
ATCTTGAACTGCTTGGCCAGGCGGTCGGCGTGGTAGCCCTGTTGGTCGCA
GAAGATGCCCAGCTTGATGGCCGAGCAGGTCAGGTACTGGCGCACGTCGG
GCTCATTGGGGAAGATCAGGTTCTTCAGCTGGGAGATCTGGTCGTTGCTC
AGCGGATTCTCCTTGAGGCAATCAACGCGGATTTTCCTGATCTCCTCACC
AGTCTTGGGCGTCCAGTCATCGGCATGGGCCACAGCACAGAGGGCCAGAG
CTACGATCAGATACTTGAGCATGTCGACTGATAACT

BS11391.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7584-PA 456 Obp99c-RA 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99c-RA 580 CG7584-RA 62..517 472..17 2280 100 Minus
Obp99c-RB 566 CG7584-RB 88..503 432..17 2080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29685799..29686213 17..431 2075 100 Plus
3R 32079331 3R 29686681..29686723 430..472 215 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:26:28 has no hits.

BS11391.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:41 Download gff for BS11391.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7584-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:46 Download gff for BS11391.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7584-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:40:09 Download gff for BS11391.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp99c-RA 53..517 17..483 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:19 Download gff for BS11391.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp99c-RA 53..517 17..483 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:19 Download gff for BS11391.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29685799..29686212 17..430 100 <- Plus
3R 29686682..29686732 431..483 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:40:09 Download gff for BS11391.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25511521..25511934 17..430 100 <- Plus
arm_3R 25512404..25512454 431..483 92   Plus

BS11391.5prime Sequence

486 bp (485 high quality bases) assembled on 2006-04-18

> BS11391.5prime
GAAGTTATCAGTCGACATGCTCAAGTATCTGATCGTAGCTCTGGCCCTCT
GTGCTGTGGCCCATGCCGATGACTGGACGCCCAAGACTGGTGAGGAGATC
AGGAAAATCCGCGTTGATTGCCTCAAGGAGAATCCGCTGAGCAACGACCA
GATCTCCCAGCTGAAGAACCTGATCTTCCCCAATGAGCCCGACGTGCGCC
AGTACCTGACCTGCTCGGCCATCAAGCTGGGCATCTTCTGCGACCAACAG
GGCTACCACGCCGACCGCCTGGCCAAGCAGTTCAAGATGGACCTGTCCGA
GGAGGAGGCCCTTCAGATCGCCCAGAGCTGCGTGGACGACAACGCGCAGA
AGAATCCCACGGATGTGTGGGCCTTTCGCGGACACCAGTGCATGATGGCC
AGTAAGATCGGCGACAAGGTCAGGGCCTTCGTGAAGGCCAAGGCGGAGGA
GGCCAAAAAGAAGGCCGCCTAGAAGCTTTCTAGACC

BS11391.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7584-PA 456 Obp99c-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99c-RA 580 CG7584-RA 62..517 17..472 2280 100 Plus
Obp99c-RB 566 CG7584-RB 88..503 57..472 2080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29685799..29686213 472..58 2075 100 Minus
3R 32079331 3R 29686681..29686723 59..17 215 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:55:20 has no hits.

BS11391.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:43 Download gff for BS11391.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7584-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:47 Download gff for BS11391.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7584-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:48:26 Download gff for BS11391.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp99c-RA 53..517 6..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:05:48 Download gff for BS11391.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp99c-RA 53..517 6..472 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:05:48 Download gff for BS11391.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29685799..29686212 59..472 100 <- Minus
3R 29686682..29686732 6..58 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:48:26 Download gff for BS11391.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25511521..25511934 59..472 100 <- Minus
arm_3R 25512404..25512454 6..58 92   Minus

BS11391.complete Sequence

488 bp assembled on 2006-11-01

GenBank Submission: FJ636851

> BS11391.complete
GAAGTTATCAGTCGACATGCTCAAGTATCTGATCGTAGCTCTGGCCCTCT
GTGCTGTGGCCCATGCCGATGACTGGACGCCCAAGACTGGTGAGGAGATC
AGGAAAATCCGCGTTGATTGCCTCAAGGAGAATCCGCTGAGCAACGACCA
GATCTCCCAGCTGAAGAACCTGATCTTCCCCAATGAGCCCGACGTGCGCC
AGTACCTGACCTGCTCGGCCATCAAGCTGGGCATCTTCTGCGACCAACAG
GGCTACCACGCCGACCGCCTGGCCAAGCAGTTCAAGATGGACCTGTCCGA
GGAGGAGGCCCTTCAGATCGCCCAGAGCTGCGTGGACGACAACGCGCAGA
AGAATCCCACGGATGTGTGGGCCTTTCGCGGACACCAGTGCATGATGGCC
AGTAAGATCGGCGACAAGGTCAGGGCCTTCGTGAAGGCCAAGGCGGAGGA
GGCCAAAAAGAAGGCCGCCTAGAAGCTTTCTAGACCAT

BS11391.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99c-RA 456 CG7584-PA 1..456 17..472 2280 100 Plus
Obp99c-RB 186 CG7584-PB 1..186 287..472 930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99c-RA 580 CG7584-RA 62..517 17..472 2280 100 Plus
Obp99c-RB 566 CG7584-RB 88..503 57..472 2080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29685799..29686213 472..58 2075 100 Minus
3R 32079331 3R 29686681..29686723 59..17 215 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:18:40 has no hits.

BS11391.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:18 Download gff for BS11391.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99c-RA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:23 Download gff for BS11391.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99c-RA 51..515 6..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:33 Download gff for BS11391.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99c-RA 62..517 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:19 Download gff for BS11391.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99c-RA 51..515 6..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:06 Download gff for BS11391.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99c-RA 62..517 17..472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:06 Download gff for BS11391.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29685799..29686212 59..472 100 <- Minus
3R 29686682..29686723 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:33 Download gff for BS11391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25511521..25511934 59..472 100 <- Minus
arm_3R 25512404..25512445 17..58 100   Minus

BS11391.pep Sequence

Translation from 16 to 471

> BS11391.pep
MLKYLIVALALCAVAHADDWTPKTGEEIRKIRVDCLKENPLSNDQISQLK
NLIFPNEPDVRQYLTCSAIKLGIFCDQQGYHADRLAKQFKMDLSEEEALQ
IAQSCVDDNAQKNPTDVWAFRGHQCMMASKIGDKVRAFVKAKAEEAKKKA
A*

BS11391.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99c-PA 151 CG7584-PA 1..151 1..151 789 100 Plus
Obp99c-PB 61 CG7584-PB 1..61 91..151 313 100 Plus
Obp44a-PB 143 CG2297-PB 5..133 7..131 191 28.7 Plus
Obp44a-PA 143 CG2297-PA 5..133 7..131 191 28.7 Plus