Clone Sequence Records
BS11392.3prime Sequence
705 bp (704 high quality bases) assembled on 2006-04-18
> BS11392.3prime
ATGGTCTAGAAAGCTTTCAGGAGTCAAAAGCGACCACCTGTTGAATGCAT
TGTTCGACTATGCTAAAAAGTATTTCCGAAGTCTTAACACTACTAAATGG
CCTATCTACAGGAGGTACATGGACAAACAGGCTTCGTTTTCTGTCCATAT
CGAGCGATTTCAGATAGATATAGCCGCAGAGAAAGTCACCCACATTTTTG
GATGCCTTTGTGGCGCTCAGGGATTTGAGATTATCATTATGTGTCGGCTG
TTGTGTGGGTCCCACACAATCGGCGCAATTCTCATTTACAACCGCCACAA
TCTTATCCACATCTAATTCGGTCTTCAAGACATTTGCATGTCCATTGTTG
GGTAGTTCGCAAGTGCCGTTGGCCAGTTTTTTATCACAATTATCAGCTCG
GCGGAACTTGTGATTGTACGCCAGCTTCTCGATGTATACACACTTGGCAA
CGCCCGAAACACCGACATGGATAACAAGATATGGCTGGCGTTTCCAAATC
TCCGCCACCGCCTCGTCCACAGCCCCGTATTCCACCGAAACCAACCGCTT
TTCCAGATCATATTCTATGCCATCGTGAGTTAGGATTTCCGGCAGCAGTT
TCACAGCTTCCCAGCTGGCGTTGACCGCTTCGTGACCGAGAAATGGACCA
AATCCGGAGACTACAATGAGCTTTCGATCTGACGACGCCATGTCGACTGA
TAACT
BS11392.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-PA | 675 | CG32147-RA | 1..675 | 691..17 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-RA | 911 | CG32147-RA | 51..726 | 691..16 | 3380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15143248..15143710 | 16..478 | 2315 | 100 | Plus |
3L | 28110227 | 3L | 15143797..15144009 | 479..691 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:26:32 has no hits.
BS11392.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:44 Download gff for
BS11392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-PA | 1..675 | 17..691 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:48 Download gff for
BS11392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-PA | 1..675 | 17..691 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:40:11 Download gff for
BS11392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..726 | 16..691 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:27 Download gff for
BS11392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..726 | 16..691 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:27 Download gff for
BS11392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15143248..15143710 | 16..478 | 100 | <- | Plus |
3L | 15143797..15144009 | 479..691 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:40:11 Download gff for
BS11392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15136348..15136810 | 16..478 | 100 | <- | Plus |
arm_3L | 15136897..15137109 | 479..691 | 100 | | Plus |
BS11392.5prime Sequence
705 bp (704 high quality bases) assembled on 2006-04-18
> BS11392.5prime
GAAGTTATCAGTCGACATGGCGTCGTCAGATCGAAAGCTCATTGTAGTCT
CCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAACGCCAGCTGGGAA
GCTGTGAAACTGCTGCCGGAAATCCTAACTCACGATGGCATAGAATATGA
TCTGGAAAAGCGGTTGGTTTCGGTGGAATACGGGGCTGTGGACGAGGCGG
TGGCGGAGATTTGGAAACGCCAGCCATATCTTGTTATCCATGTCGGTGTT
TCGGGCGTTGCCAAGTGTGTATACATCGAGAAGCTGGCGTACAATCACAA
GTTCCGCCGAGCTGATAATTGTGATAAAAAACTGGCCAACGGCACTTGCG
AACTACCCAACAATGGACATGCAAATGTCTTGAAGACCGAATTAGATGTG
GATAAGATTGTGGCGGTTGTAAATGAGAATTGCGCCGATTGTGTGGGACC
CACACAACAGCCGACACATAATGATAATCTCAAATCCCTGAGCGCCACAA
AGGCATCCAAAAATGTGGGTGACTTTCTCTGCGGCTATATCTATCTGAAA
TCGCTCGATATGGACAGAAAACGAAGCCTGTTTGTCCATGTACCTCCTGT
AGATAGGCCATTTAGTAGTGTTAAGACTTCGGAAATACTTTTTAGCATAG
TCGAACAATGCATTCAACAGGTGGTCGCTTTTGACTCCTGAAAGCTTTCT
AGACC
BS11392.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-PA | 675 | CG32147-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-RA | 911 | CG32147-RA | 51..726 | 17..692 | 3380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15143248..15143710 | 692..230 | 2315 | 100 | Minus |
3L | 28110227 | 3L | 15143797..15144009 | 229..17 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:07:26 has no hits.
BS11392.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:45 Download gff for
BS11392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-PA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:50 Download gff for
BS11392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-PA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:15 Download gff for
BS11392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..726 | 17..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:59 Download gff for
BS11392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..726 | 17..692 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:59 Download gff for
BS11392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15143248..15143710 | 230..692 | 100 | <- | Minus |
3L | 15143797..15144009 | 17..229 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:15 Download gff for
BS11392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15136348..15136810 | 230..692 | 100 | <- | Minus |
arm_3L | 15136897..15137109 | 17..229 | 100 | | Minus |
BS11392.complete Sequence
707 bp assembled on 2006-11-01
GenBank Submission: FJ636852
> BS11392.complete
GAAGTTATCAGTCGACATGGCGTCGTCAGATCGAAAGCTCATTGTAGTCT
CCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAACGCCAGCTGGGAA
GCTGTGAAACTGCTGCCGGAAATCCTAACTCACGATGGCATAGAATATGA
TCTGGAAAAGCGGTTGGTTTCGGTGGAATACGGGGCTGTGGACGAGGCGG
TGGCGGAGATTTGGAAACGCCAGCCATATCTTGTTATCCATGTCGGTGTT
TCGGGCGTTGCCAAGTGTGTATACATCGAGAAGCTGGCGTACAATCACAA
GTTCCGCCGAGCTGATAATTGTGATAAAAAACTGGCCAACGGCACTTGCG
AACTACCCAACAATGGACATGCAAATGTCTTGAAGACCGAATTAGATGTG
GATAAGATTGTGGCGGTTGTAAATGAGAATTGCGCCGATTGTGTGGGACC
CACACAACAGCCGACACATAATGATAATCTCAAATCCCTGAGCGCCACAA
AGGCATCCAAAAATGTGGGTGACTTTCTCTGCGGCTATATCTATCTGAAA
TCGCTCGATATGGACAGAAAACGAAGCCTGTTTGTCCATGTACCTCCTGT
AGATAGGCCATTTAGTAGTGTTAAGACTTCGGAAATACTTTTTAGCATAG
TCGAACAATGCATTCAACAGGTGGTCGCTTTTGACTCCTGAAAGCTTTCT
AGACCAT
BS11392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-RA | 675 | CG32147-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-RA | 911 | CG32147-RA | 51..726 | 17..692 | 3380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15143248..15143710 | 692..230 | 2315 | 100 | Minus |
3L | 28110227 | 3L | 15143797..15144009 | 229..17 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:50:50 has no hits.
BS11392.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:58 Download gff for
BS11392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:08 Download gff for
BS11392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 17..692 | 17..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:04 Download gff for
BS11392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..724 | 17..690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:58 Download gff for
BS11392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 17..692 | 17..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:24 Download gff for
BS11392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..724 | 17..690 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:24 Download gff for
BS11392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15143250..15143710 | 230..690 | 100 | <- | Minus |
3L | 15143797..15144009 | 17..229 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:04 Download gff for
BS11392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15136350..15136810 | 230..690 | 100 | <- | Minus |
arm_3L | 15136897..15137109 | 17..229 | 100 | | Minus |
BS11392.pep Sequence
Translation from 16 to 690
> BS11392.pep
MASSDRKLIVVSGFGPFLGHEAVNASWEAVKLLPEILTHDGIEYDLEKRL
VSVEYGAVDEAVAEIWKRQPYLVIHVGVSGVAKCVYIEKLAYNHKFRRAD
NCDKKLANGTCELPNNGHANVLKTELDVDKIVAVVNENCADCVGPTQQPT
HNDNLKSLSATKASKNVGDFLCGYIYLKSLDMDRKRSLFVHVPPVDRPFS
SVKTSEILFSIVEQCIQQVVAFDS*
BS11392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-PA | 224 | CG32147-PA | 1..224 | 1..224 | 1169 | 100 | Plus |