Clone BS11392 Report

Search the DGRC for BS11392

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG32147-RA
Protein status:BS11392.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11392.3prime Sequence

705 bp (704 high quality bases) assembled on 2006-04-18

> BS11392.3prime
ATGGTCTAGAAAGCTTTCAGGAGTCAAAAGCGACCACCTGTTGAATGCAT
TGTTCGACTATGCTAAAAAGTATTTCCGAAGTCTTAACACTACTAAATGG
CCTATCTACAGGAGGTACATGGACAAACAGGCTTCGTTTTCTGTCCATAT
CGAGCGATTTCAGATAGATATAGCCGCAGAGAAAGTCACCCACATTTTTG
GATGCCTTTGTGGCGCTCAGGGATTTGAGATTATCATTATGTGTCGGCTG
TTGTGTGGGTCCCACACAATCGGCGCAATTCTCATTTACAACCGCCACAA
TCTTATCCACATCTAATTCGGTCTTCAAGACATTTGCATGTCCATTGTTG
GGTAGTTCGCAAGTGCCGTTGGCCAGTTTTTTATCACAATTATCAGCTCG
GCGGAACTTGTGATTGTACGCCAGCTTCTCGATGTATACACACTTGGCAA
CGCCCGAAACACCGACATGGATAACAAGATATGGCTGGCGTTTCCAAATC
TCCGCCACCGCCTCGTCCACAGCCCCGTATTCCACCGAAACCAACCGCTT
TTCCAGATCATATTCTATGCCATCGTGAGTTAGGATTTCCGGCAGCAGTT
TCACAGCTTCCCAGCTGGCGTTGACCGCTTCGTGACCGAGAAATGGACCA
AATCCGGAGACTACAATGAGCTTTCGATCTGACGACGCCATGTCGACTGA
TAACT

BS11392.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-PA 675 CG32147-RA 1..675 691..17 3375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-RA 911 CG32147-RA 51..726 691..16 3380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15143248..15143710 16..478 2315 100 Plus
3L 28110227 3L 15143797..15144009 479..691 1065 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:26:32 has no hits.

BS11392.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:44 Download gff for BS11392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-PA 1..675 17..691 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:48 Download gff for BS11392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-PA 1..675 17..691 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:40:11 Download gff for BS11392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..726 16..691 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:27 Download gff for BS11392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..726 16..691 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:27 Download gff for BS11392.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15143248..15143710 16..478 100 <- Plus
3L 15143797..15144009 479..691 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:40:11 Download gff for BS11392.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15136348..15136810 16..478 100 <- Plus
arm_3L 15136897..15137109 479..691 100   Plus

BS11392.5prime Sequence

705 bp (704 high quality bases) assembled on 2006-04-18

> BS11392.5prime
GAAGTTATCAGTCGACATGGCGTCGTCAGATCGAAAGCTCATTGTAGTCT
CCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAACGCCAGCTGGGAA
GCTGTGAAACTGCTGCCGGAAATCCTAACTCACGATGGCATAGAATATGA
TCTGGAAAAGCGGTTGGTTTCGGTGGAATACGGGGCTGTGGACGAGGCGG
TGGCGGAGATTTGGAAACGCCAGCCATATCTTGTTATCCATGTCGGTGTT
TCGGGCGTTGCCAAGTGTGTATACATCGAGAAGCTGGCGTACAATCACAA
GTTCCGCCGAGCTGATAATTGTGATAAAAAACTGGCCAACGGCACTTGCG
AACTACCCAACAATGGACATGCAAATGTCTTGAAGACCGAATTAGATGTG
GATAAGATTGTGGCGGTTGTAAATGAGAATTGCGCCGATTGTGTGGGACC
CACACAACAGCCGACACATAATGATAATCTCAAATCCCTGAGCGCCACAA
AGGCATCCAAAAATGTGGGTGACTTTCTCTGCGGCTATATCTATCTGAAA
TCGCTCGATATGGACAGAAAACGAAGCCTGTTTGTCCATGTACCTCCTGT
AGATAGGCCATTTAGTAGTGTTAAGACTTCGGAAATACTTTTTAGCATAG
TCGAACAATGCATTCAACAGGTGGTCGCTTTTGACTCCTGAAAGCTTTCT
AGACC

BS11392.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-PA 675 CG32147-RA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-RA 911 CG32147-RA 51..726 17..692 3380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15143248..15143710 692..230 2315 100 Minus
3L 28110227 3L 15143797..15144009 229..17 1065 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:07:26 has no hits.

BS11392.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:45 Download gff for BS11392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-PA 1..675 17..691 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:50 Download gff for BS11392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-PA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:15 Download gff for BS11392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..726 17..692 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:59 Download gff for BS11392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..726 17..692 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:59 Download gff for BS11392.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15143248..15143710 230..692 100 <- Minus
3L 15143797..15144009 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:15 Download gff for BS11392.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15136348..15136810 230..692 100 <- Minus
arm_3L 15136897..15137109 17..229 100   Minus

BS11392.complete Sequence

707 bp assembled on 2006-11-01

GenBank Submission: FJ636852

> BS11392.complete
GAAGTTATCAGTCGACATGGCGTCGTCAGATCGAAAGCTCATTGTAGTCT
CCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAACGCCAGCTGGGAA
GCTGTGAAACTGCTGCCGGAAATCCTAACTCACGATGGCATAGAATATGA
TCTGGAAAAGCGGTTGGTTTCGGTGGAATACGGGGCTGTGGACGAGGCGG
TGGCGGAGATTTGGAAACGCCAGCCATATCTTGTTATCCATGTCGGTGTT
TCGGGCGTTGCCAAGTGTGTATACATCGAGAAGCTGGCGTACAATCACAA
GTTCCGCCGAGCTGATAATTGTGATAAAAAACTGGCCAACGGCACTTGCG
AACTACCCAACAATGGACATGCAAATGTCTTGAAGACCGAATTAGATGTG
GATAAGATTGTGGCGGTTGTAAATGAGAATTGCGCCGATTGTGTGGGACC
CACACAACAGCCGACACATAATGATAATCTCAAATCCCTGAGCGCCACAA
AGGCATCCAAAAATGTGGGTGACTTTCTCTGCGGCTATATCTATCTGAAA
TCGCTCGATATGGACAGAAAACGAAGCCTGTTTGTCCATGTACCTCCTGT
AGATAGGCCATTTAGTAGTGTTAAGACTTCGGAAATACTTTTTAGCATAG
TCGAACAATGCATTCAACAGGTGGTCGCTTTTGACTCCTGAAAGCTTTCT
AGACCAT

BS11392.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-RA 675 CG32147-PA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-RA 911 CG32147-RA 51..726 17..692 3380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15143248..15143710 692..230 2315 100 Minus
3L 28110227 3L 15143797..15144009 229..17 1065 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:50:50 has no hits.

BS11392.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:58 Download gff for BS11392.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:08 Download gff for BS11392.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 17..692 17..692 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:04 Download gff for BS11392.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..724 17..690 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:58 Download gff for BS11392.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 17..692 17..692 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:24 Download gff for BS11392.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..724 17..690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:24 Download gff for BS11392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15143250..15143710 230..690 100 <- Minus
3L 15143797..15144009 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:04 Download gff for BS11392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15136350..15136810 230..690 100 <- Minus
arm_3L 15136897..15137109 17..229 100   Minus

BS11392.pep Sequence

Translation from 16 to 690

> BS11392.pep
MASSDRKLIVVSGFGPFLGHEAVNASWEAVKLLPEILTHDGIEYDLEKRL
VSVEYGAVDEAVAEIWKRQPYLVIHVGVSGVAKCVYIEKLAYNHKFRRAD
NCDKKLANGTCELPNNGHANVLKTELDVDKIVAVVNENCADCVGPTQQPT
HNDNLKSLSATKASKNVGDFLCGYIYLKSLDMDRKRSLFVHVPPVDRPFS
SVKTSEILFSIVEQCIQQVVAFDS*

BS11392.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-PA 224 CG32147-PA 1..224 1..224 1169 100 Plus