Clone BS11401 Report

Search the DGRC for BS11401

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptRpS15-RA
Protein status:BS11401.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11401.3prime Sequence

477 bp (476 high quality bases) assembled on 2006-05-08

> BS11401.3prime
ATGGTCTAGAAAGCTTTCACTTCAGAGGAATGAAACGGGAGCTGTGGGTG
GCACCGATACCAGGACGACCGTGCTTGACGGGCTTGTAGGTCAGGGCGAA
CTCGCCCAGGTAGTGACCGATCATCTCGGGCTTGACCTCCACCTGTCCGA
AGTCCTTGCCGTTGTAGACGCCAATGATGGAGCCGGTCATCTCGGGTACG
ATGATCATGTTCCTCAGGTGGGTCTTGACAATCTCGGGCTTCTCATTTGG
CGGTGCCTCCTTCTTGGCCTTGCGCAGCTTCTTGATCAGAGCCATTGGCT
TGCGCTTCAGTCCGCGGGAGAAACGCCTGCGGGCACGGCTGTGCATCAGC
TCCACCAGCTGGTTGTTGGGCATGTCCAGAAGCTGGTCCAAGTCGACACC
GCGGTAGGTGAACTTCTTGAAGGTACGCTTCTTCTTCAGATTTTCATCGA
CTTGATCGGCCATGTCGACTGATAACT

BS11401.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8332-PA 447 RpS15-RA 1..447 463..17 2235 100 Minus
CG8332-PB 444 RpS15-RB 7..444 454..17 2190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-RA 627 CG8332-RA 34..480 463..17 2235 100 Minus
RpS15-RB 726 CG8332-RB 226..663 454..17 2190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16570624..16570848 141..365 1125 100 Plus
2R 25286936 2R 16570259..16570388 17..146 650 100 Plus
2R 25286936 2R 16570917..16571005 366..454 445 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:47:00 has no hits.

BS11401.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:55 Download gff for BS11401.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:02 Download gff for BS11401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8332-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:41 Download gff for BS11401.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..488 8..463 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:27 Download gff for BS11401.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..488 8..463 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:27 Download gff for BS11401.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16570626..16570848 143..365 100 <- Plus
2R 16570917..16571005 366..454 100 <- Plus
2R 16570251..16570384 8..142 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:41 Download gff for BS11401.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12457756..12457889 8..142 97 <- Plus
arm_2R 12458131..12458353 143..365 100 <- Plus
arm_2R 12458422..12458510 366..454 100 <- Plus

BS11401.5prime Sequence

477 bp (476 high quality bases) assembled on 2006-05-08

> BS11401.5prime
GAAGTTATCAGTCGACATGGCCGATCAAGTCGATGAAAATCTGAAGAAGA
AGCGTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTT
CTGGACATGCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCG
CAGGCGTTTCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGA
AGCTGCGCAAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATT
GTCAAGACCCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTC
CATCATTGGCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGC
CCGAGATGATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCC
GTCAAGCACGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCAT
TCCTCTGAAGTGAAAGCTTTCTAGACC

BS11401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8332-PA 447 RpS15-RA 1..447 17..463 2235 100 Plus
CG8332-PB 444 RpS15-RB 7..444 26..463 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-RA 627 CG8332-RA 34..480 17..463 2235 100 Plus
RpS15-RB 726 CG8332-RB 226..663 26..463 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16570624..16570848 339..115 1125 100 Minus
2R 25286936 2R 16570259..16570388 463..334 650 100 Minus
2R 25286936 2R 16570917..16571005 114..26 445 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:45:26 has no hits.

BS11401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:56 Download gff for BS11401.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:03 Download gff for BS11401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8332-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:37 Download gff for BS11401.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..488 17..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:43 Download gff for BS11401.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..488 17..472 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:43 Download gff for BS11401.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16570251..16570384 338..472 97 <- Minus
2R 16570626..16570848 115..337 100 <- Minus
2R 16570917..16571005 26..114 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:37 Download gff for BS11401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12457756..12457889 338..472 97 <- Minus
arm_2R 12458131..12458353 115..337 100 <- Minus
arm_2R 12458422..12458510 26..114 100 <- Minus

BS11401.complete Sequence

479 bp assembled on 2006-11-01

GenBank Submission: FJ636853

> BS11401.complete
GAAGTTATCAGTCGACATGGCCGATCAAGTCGATGAAAATCTGAAGAAGA
AGCGTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTT
CTGGACATGCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCG
CAGGCGTTTCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGA
AGCTGCGCAAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATT
GTCAAGACCCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTC
CATCATTGGCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGC
CCGAGATGATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCC
GTCAAGCACGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCAT
TCCTCTGAAGTGAAAGCTTTCTAGACCAT

BS11401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-RA 447 CG8332-PA 1..447 17..463 2235 100 Plus
RpS15-RB 444 CG8332-PB 7..444 26..463 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-RA 627 CG8332-RA 34..480 17..463 2235 100 Plus
RpS15-RB 726 CG8332-RB 226..663 26..463 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16570624..16570848 339..115 1125 100 Minus
2R 25286936 2R 16570259..16570388 463..334 650 100 Minus
2R 25286936 2R 16570917..16571005 114..26 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:58:49 has no hits.

BS11401.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:59 Download gff for BS11401.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:09 Download gff for BS11401.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 41..495 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:31 Download gff for BS11401.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..479 17..462 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:59 Download gff for BS11401.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 41..495 17..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:32 Download gff for BS11401.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..479 17..462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:32 Download gff for BS11401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16570260..16570384 338..462 100 <- Minus
2R 16570626..16570848 115..337 100 <- Minus
2R 16570917..16571011 17..114 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:31 Download gff for BS11401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12457765..12457889 338..462 100 <- Minus
arm_2R 12458131..12458353 115..337 100 <- Minus
arm_2R 12458422..12458516 17..114 95   Minus

BS11401.pep Sequence

Translation from 16 to 462

> BS11401.pep
MADQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSR
GLKRKPMALIKKLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVY
NGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK*

BS11401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-PA 148 CG8332-PA 1..148 1..148 769 100 Plus
RpS15-PB 147 CG8332-PB 3..147 4..148 754 100 Plus