Clone Sequence Records
BS11401.3prime Sequence
477 bp (476 high quality bases) assembled on 2006-05-08
> BS11401.3prime
ATGGTCTAGAAAGCTTTCACTTCAGAGGAATGAAACGGGAGCTGTGGGTG
GCACCGATACCAGGACGACCGTGCTTGACGGGCTTGTAGGTCAGGGCGAA
CTCGCCCAGGTAGTGACCGATCATCTCGGGCTTGACCTCCACCTGTCCGA
AGTCCTTGCCGTTGTAGACGCCAATGATGGAGCCGGTCATCTCGGGTACG
ATGATCATGTTCCTCAGGTGGGTCTTGACAATCTCGGGCTTCTCATTTGG
CGGTGCCTCCTTCTTGGCCTTGCGCAGCTTCTTGATCAGAGCCATTGGCT
TGCGCTTCAGTCCGCGGGAGAAACGCCTGCGGGCACGGCTGTGCATCAGC
TCCACCAGCTGGTTGTTGGGCATGTCCAGAAGCTGGTCCAAGTCGACACC
GCGGTAGGTGAACTTCTTGAAGGTACGCTTCTTCTTCAGATTTTCATCGA
CTTGATCGGCCATGTCGACTGATAACT
BS11401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8332-PA | 447 | RpS15-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
CG8332-PB | 444 | RpS15-RB | 7..444 | 454..17 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-RA | 627 | CG8332-RA | 34..480 | 463..17 | 2235 | 100 | Minus |
RpS15-RB | 726 | CG8332-RB | 226..663 | 454..17 | 2190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16570624..16570848 | 141..365 | 1125 | 100 | Plus |
2R | 25286936 | 2R | 16570259..16570388 | 17..146 | 650 | 100 | Plus |
2R | 25286936 | 2R | 16570917..16571005 | 366..454 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:47:00 has no hits.
BS11401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:55 Download gff for
BS11401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:02 Download gff for
BS11401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8332-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:41 Download gff for
BS11401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..488 | 8..463 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:27 Download gff for
BS11401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..488 | 8..463 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:27 Download gff for
BS11401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16570626..16570848 | 143..365 | 100 | <- | Plus |
2R | 16570917..16571005 | 366..454 | 100 | <- | Plus |
2R | 16570251..16570384 | 8..142 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:41 Download gff for
BS11401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12457756..12457889 | 8..142 | 97 | <- | Plus |
arm_2R | 12458131..12458353 | 143..365 | 100 | <- | Plus |
arm_2R | 12458422..12458510 | 366..454 | 100 | <- | Plus |
BS11401.5prime Sequence
477 bp (476 high quality bases) assembled on 2006-05-08
> BS11401.5prime
GAAGTTATCAGTCGACATGGCCGATCAAGTCGATGAAAATCTGAAGAAGA
AGCGTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTT
CTGGACATGCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCG
CAGGCGTTTCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGA
AGCTGCGCAAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATT
GTCAAGACCCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTC
CATCATTGGCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGC
CCGAGATGATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCC
GTCAAGCACGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCAT
TCCTCTGAAGTGAAAGCTTTCTAGACC
BS11401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8332-PA | 447 | RpS15-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
CG8332-PB | 444 | RpS15-RB | 7..444 | 26..463 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-RA | 627 | CG8332-RA | 34..480 | 17..463 | 2235 | 100 | Plus |
RpS15-RB | 726 | CG8332-RB | 226..663 | 26..463 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16570624..16570848 | 339..115 | 1125 | 100 | Minus |
2R | 25286936 | 2R | 16570259..16570388 | 463..334 | 650 | 100 | Minus |
2R | 25286936 | 2R | 16570917..16571005 | 114..26 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:45:26 has no hits.
BS11401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:56 Download gff for
BS11401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:03 Download gff for
BS11401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8332-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:37 Download gff for
BS11401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..488 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:43 Download gff for
BS11401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..488 | 17..472 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:43 Download gff for
BS11401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16570251..16570384 | 338..472 | 97 | <- | Minus |
2R | 16570626..16570848 | 115..337 | 100 | <- | Minus |
2R | 16570917..16571005 | 26..114 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:37 Download gff for
BS11401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12457756..12457889 | 338..472 | 97 | <- | Minus |
arm_2R | 12458131..12458353 | 115..337 | 100 | <- | Minus |
arm_2R | 12458422..12458510 | 26..114 | 100 | <- | Minus |
BS11401.complete Sequence
479 bp assembled on 2006-11-01
GenBank Submission: FJ636853
> BS11401.complete
GAAGTTATCAGTCGACATGGCCGATCAAGTCGATGAAAATCTGAAGAAGA
AGCGTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTT
CTGGACATGCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCG
CAGGCGTTTCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGA
AGCTGCGCAAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATT
GTCAAGACCCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTC
CATCATTGGCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGC
CCGAGATGATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCC
GTCAAGCACGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCAT
TCCTCTGAAGTGAAAGCTTTCTAGACCAT
BS11401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-RA | 447 | CG8332-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
RpS15-RB | 444 | CG8332-PB | 7..444 | 26..463 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-RA | 627 | CG8332-RA | 34..480 | 17..463 | 2235 | 100 | Plus |
RpS15-RB | 726 | CG8332-RB | 226..663 | 26..463 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16570624..16570848 | 339..115 | 1125 | 100 | Minus |
2R | 25286936 | 2R | 16570259..16570388 | 463..334 | 650 | 100 | Minus |
2R | 25286936 | 2R | 16570917..16571005 | 114..26 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:58:49 has no hits.
BS11401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:59 Download gff for
BS11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:09 Download gff for
BS11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 41..495 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:31 Download gff for
BS11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..479 | 17..462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:59 Download gff for
BS11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 41..495 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:32 Download gff for
BS11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..479 | 17..462 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:32 Download gff for
BS11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16570260..16570384 | 338..462 | 100 | <- | Minus |
2R | 16570626..16570848 | 115..337 | 100 | <- | Minus |
2R | 16570917..16571011 | 17..114 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:31 Download gff for
BS11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12457765..12457889 | 338..462 | 100 | <- | Minus |
arm_2R | 12458131..12458353 | 115..337 | 100 | <- | Minus |
arm_2R | 12458422..12458516 | 17..114 | 95 | | Minus |
BS11401.pep Sequence
Translation from 16 to 462
> BS11401.pep
MADQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSR
GLKRKPMALIKKLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVY
NGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK*
BS11401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-PA | 148 | CG8332-PA | 1..148 | 1..148 | 769 | 100 | Plus |
RpS15-PB | 147 | CG8332-PB | 3..147 | 4..148 | 754 | 100 | Plus |