Clone BS11404 Report

Search the DGRC for BS11404

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptRpL6-RB
Protein status:BS11404.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11404.3prime Sequence

819 bp (818 high quality bases) assembled on 2006-05-08

> BS11404.3prime
ATGGTCTAGAAAGCTTTTAGAATCGCATGCGGTGGGGGTATTGGGAGGAG
TGCAGGGCAAACATGTTCTGCAAGTACTTGGCGAAGAACTTGCCCTCGGG
ATGGGCCTTGATGACCTTCAGCAGGGCGGCGTCCACCTCCTTCTGGTCCT
TCTTGCGCTGCTCGTTGGGCACGAAGCGCTCCTTCTTGGCCGCGAAGATG
TCGGCCTCGCCGGTCTTCTTGTCCTTCTTAGCCTTCAGACGGCGGAAGTA
GGCGTCGTTCAGGTGCTCGGGCACCTTGAAGGCACCGAGATCCACCTTCG
AGGAGGTGCCGATCACGTAGCGCTGGGACACGCGACGCAGCGGGCACGAG
TTGAGGGCGAAGGGTCCGGTGACCAGCAGGAGTCCGGAGGCCAAGACCTT
CAACAGGACGACGCGCTTGCCCTGGTGGCGTCCGGCCAGCAGGATGAGCA
CGGTTCCGGGGGTCAGGTTGCGGCGCGTGTTGCGTTTGTGCTCGCTGAAG
TTTGCCTTGGAGGGGCGCTTCTTCACGAACGTCTTGGTCGGGTAGGAGGC
CTTGCTCTTCTTCAGGAAGACCGTGCGCTCACCGCCGTTCTTGGGTCCTC
CGATCTTCTTCACCTTCTTGATGGGCACCTTGGCCTTCTCCACGACGGGG
CTCTTCTTGTCCTTCAGGCGGTACAGAGCACGACGCTTGTACATCTGGGC
CTTGGAGTAACGCAGGATACCGCCCTTCAGGTAGGAGTTGACGGGGTGCT
TCTTGCCCTTTTTGGCCGACTTGGCCACCTTTTTAGCTTTCTCGATGGGT
GCCATGTCGACTGATAACT

BS11404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11522-PB 789 RpL6-RB 1..789 805..17 3945 100 Minus
CG11522-PA 732 RpL6-RA 187..732 562..17 2730 100 Minus
CG11522-PA 732 RpL6-RA 1..192 805..614 960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-RB 967 CG11522-RB 47..835 805..17 3945 100 Minus
RpL6-RA 910 CG11522-RA 233..778 562..17 2730 100 Minus
RpL6-RA 910 CG11522-RA 47..238 805..614 960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31594924..31595604 17..697 3405 100 Plus
3R 32079331 3R 31596048..31596158 695..805 555 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:05:20 has no hits.

BS11404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:59 Download gff for BS11404.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-PB 1..789 17..805 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:08 Download gff for BS11404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11522-PB 1..789 17..805 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:24:16 Download gff for BS11404.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 42..837 13..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:38 Download gff for BS11404.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 42..837 13..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:38 Download gff for BS11404.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31594922..31595601 13..694 99 <- Plus
3R 31596048..31596163 695..814 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:24:16 Download gff for BS11404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27420644..27421323 13..694 99 <- Plus
arm_3R 27421770..27421885 695..814 96   Plus

BS11404.5prime Sequence

819 bp (818 high quality bases) assembled on 2006-05-08

> BS11404.5prime
GAAGTTATCAGTCGACATGGCACCCATCGAGAAAGCTAAAAAGGTGGCCA
AGTCGGCCAAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGC
GGTATCCTGCGTTACTCCAAGGCCCAGATGTACAAGCGTCGTGCTCTGTA
CCGCCTGAAGGACAAGAAGAGCCCCGTCGTGGAGAAGGCCAAGGTGCCCA
TCAAGAAGGTGAAGAAGATCGGAGGACCCAAGAACGGCGGTGAGCGCACG
GTCTTCCTGAAGAAGAGCAAGGCCTCCTACCCGACCAAGACGTTCGTGAA
GAAGCGCCCCTCCAAGGCAAACTTCAGCGAGCACAAACGCAACACGCGCC
GCAACCTGACCCCCGGAACCGTGCTCATCCTGCTGGCCGGACGCCACCAG
GGCAAGCGCGTCGTCCTGTTGAAGGTCTTGGCCTCCGGACTCCTGCTGGT
CACCGGACCCTTCGCCCTCAACTCGTGCCCGCTGCGTCGCGTGTCCCAGC
GCTACGTGATCGGCACCTCCTCGAAGGTGGATCTCGGTGCCTTCAAGGTG
CCCGAGCACCTGAACGACGCCTACTTCCGCCGTCTGAAGGCTAAGAAGGA
CAAGAAGACCGGCGAGGCCGACATCTTCGCGGCCAAGAAGGAGCGCTTCG
TGCCCAACGAGCAGCGCAAGAAGGACCAGAAGGAGGTGGACGCCGCCCTG
CTGAAGGTCATCAAGGCCCATCCCGAGGGCAAGTTCTTCGCCAAGTACTT
GCAGAACATGTTTGCCCTGCACTCCTCCCAATACCCCCACCGCATGCGAT
TCTAANAGCTTTCTAGACC

BS11404.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11522-PB 789 RpL6-RB 1..789 17..805 3945 100 Plus
CG11522-PA 732 RpL6-RA 187..732 260..805 2730 100 Plus
CG11522-PA 732 RpL6-RA 1..192 17..208 960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-RB 967 CG11522-RB 47..835 17..805 3945 100 Plus
RpL6-RA 910 CG11522-RA 233..778 260..805 2730 100 Plus
RpL6-RA 910 CG11522-RA 47..238 17..208 960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31594924..31595604 805..125 3405 100 Minus
3R 32079331 3R 31596048..31596158 127..17 555 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:19:44 has no hits.

BS11404.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:00 Download gff for BS11404.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-PB 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:09 Download gff for BS11404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11522-PB 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:09 Download gff for BS11404.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 42..837 8..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:55 Download gff for BS11404.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 42..837 8..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:55 Download gff for BS11404.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31594922..31595601 128..809 99 <- Minus
3R 31596048..31596163 8..127 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:09 Download gff for BS11404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27420644..27421323 128..809 99 <- Minus
arm_3R 27421770..27421885 8..127 96   Minus

BS11404.complete Sequence

821 bp assembled on 2006-11-01

GenBank Submission: FJ636854

> BS11404.complete
GAAGTTATCAGTCGACATGGCACCCATCGAGAAAGCTAAAAAGGTGGCCA
AGTCGGCCAAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGC
GGTATCCTGCGTTACTCCAAGGCCCAGATGTACAAGCGTCGTGCTCTGTA
CCGCCTGAAGGACAAGAAGAGCCCCGTCGTGGAGAAGGCCAAGGTGCCCA
TCAAGAAGGTGAAGAAGATCGGAGGACCCAAGAACGGCGGTGAGCGCACG
GTCTTCCTGAAGAAGAGCAAGGCCTCCTACCCGACCAAGACGTTCGTGAA
GAAGCGCCCCTCCAAGGCAAACTTCAGCGAGCACAAACGCAACACGCGCC
GCAACCTGACCCCCGGAACCGTGCTCATCCTGCTGGCCGGACGCCACCAG
GGCAAGCGCGTCGTCCTGTTGAAGGTCTTGGCCTCCGGACTCCTGCTGGT
CACCGGACCCTTCGCCCTCAACTCGTGCCCGCTGCGTCGCGTGTCCCAGC
GCTACGTGATCGGCACCTCCTCGAAGGTGGATCTCGGTGCCTTCAAGGTG
CCCGAGCACCTGAACGACGCCTACTTCCGCCGTCTGAAGGCTAAGAAGGA
CAAGAAGACCGGCGAGGCCGACATCTTCGCGGCCAAGAAGGAGCGCTTCG
TGCCCAACGAGCAGCGCAAGAAGGACCAGAAGGAGGTGGACGCCGCCCTG
CTGAAGGTCATCAAGGCCCATCCCGAGGGCAAGTTCTTCGCCAAGTACTT
GCAGAACATGTTTGCCCTGCACTCCTCCCAATACCCCCACCGCATGCGAT
TCTAAAAGCTTTCTAGACCAT

BS11404.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-RB 789 CG11522-PB 1..789 17..805 3945 100 Plus
RpL6-RA 732 CG11522-PA 187..732 260..805 2730 100 Plus
RpL6-RA 732 CG11522-PA 1..192 17..208 960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-RB 967 CG11522-RB 47..835 17..805 3945 100 Plus
RpL6-RA 910 CG11522-RA 233..778 260..805 2730 100 Plus
RpL6-RA 910 CG11522-RA 47..238 17..208 960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31594924..31595604 805..125 3405 100 Minus
3R 32079331 3R 31596048..31596158 127..17 555 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:22:26 has no hits.

BS11404.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:04 Download gff for BS11404.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:12 Download gff for BS11404.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 83..878 8..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:08 Download gff for BS11404.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 47..833 17..803 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:04 Download gff for BS11404.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 83..878 8..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:49 Download gff for BS11404.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 47..833 17..803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:49 Download gff for BS11404.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31594926..31595601 128..803 100 <- Minus
3R 31596048..31596158 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:08 Download gff for BS11404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27420648..27421323 128..803 100 <- Minus
arm_3R 27421770..27421880 17..127 100   Minus

BS11404.pep Sequence

Translation from 16 to 804

> BS11404.pep
MAPIEKAKKVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDK
KSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSK
ANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFA
LNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGE
ADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFA
LHSSQYPHRMRF*

BS11404.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-PB 262 CG11522-PB 1..262 1..262 1335 100 Plus
RpL6-PA 243 CG11522-PA 1..243 1..262 1206 92.7 Plus