Clone Sequence Records
BS11404.3prime Sequence
819 bp (818 high quality bases) assembled on 2006-05-08
> BS11404.3prime
ATGGTCTAGAAAGCTTTTAGAATCGCATGCGGTGGGGGTATTGGGAGGAG
TGCAGGGCAAACATGTTCTGCAAGTACTTGGCGAAGAACTTGCCCTCGGG
ATGGGCCTTGATGACCTTCAGCAGGGCGGCGTCCACCTCCTTCTGGTCCT
TCTTGCGCTGCTCGTTGGGCACGAAGCGCTCCTTCTTGGCCGCGAAGATG
TCGGCCTCGCCGGTCTTCTTGTCCTTCTTAGCCTTCAGACGGCGGAAGTA
GGCGTCGTTCAGGTGCTCGGGCACCTTGAAGGCACCGAGATCCACCTTCG
AGGAGGTGCCGATCACGTAGCGCTGGGACACGCGACGCAGCGGGCACGAG
TTGAGGGCGAAGGGTCCGGTGACCAGCAGGAGTCCGGAGGCCAAGACCTT
CAACAGGACGACGCGCTTGCCCTGGTGGCGTCCGGCCAGCAGGATGAGCA
CGGTTCCGGGGGTCAGGTTGCGGCGCGTGTTGCGTTTGTGCTCGCTGAAG
TTTGCCTTGGAGGGGCGCTTCTTCACGAACGTCTTGGTCGGGTAGGAGGC
CTTGCTCTTCTTCAGGAAGACCGTGCGCTCACCGCCGTTCTTGGGTCCTC
CGATCTTCTTCACCTTCTTGATGGGCACCTTGGCCTTCTCCACGACGGGG
CTCTTCTTGTCCTTCAGGCGGTACAGAGCACGACGCTTGTACATCTGGGC
CTTGGAGTAACGCAGGATACCGCCCTTCAGGTAGGAGTTGACGGGGTGCT
TCTTGCCCTTTTTGGCCGACTTGGCCACCTTTTTAGCTTTCTCGATGGGT
GCCATGTCGACTGATAACT
BS11404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11522-PB | 789 | RpL6-RB | 1..789 | 805..17 | 3945 | 100 | Minus |
CG11522-PA | 732 | RpL6-RA | 187..732 | 562..17 | 2730 | 100 | Minus |
CG11522-PA | 732 | RpL6-RA | 1..192 | 805..614 | 960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-RB | 967 | CG11522-RB | 47..835 | 805..17 | 3945 | 100 | Minus |
RpL6-RA | 910 | CG11522-RA | 233..778 | 562..17 | 2730 | 100 | Minus |
RpL6-RA | 910 | CG11522-RA | 47..238 | 805..614 | 960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31594924..31595604 | 17..697 | 3405 | 100 | Plus |
3R | 32079331 | 3R | 31596048..31596158 | 695..805 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:05:20 has no hits.
BS11404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:59 Download gff for
BS11404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-PB | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:08 Download gff for
BS11404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11522-PB | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:24:16 Download gff for
BS11404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 42..837 | 13..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:38 Download gff for
BS11404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 42..837 | 13..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:38 Download gff for
BS11404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31594922..31595601 | 13..694 | 99 | <- | Plus |
3R | 31596048..31596163 | 695..814 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:24:16 Download gff for
BS11404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27420644..27421323 | 13..694 | 99 | <- | Plus |
arm_3R | 27421770..27421885 | 695..814 | 96 | | Plus |
BS11404.5prime Sequence
819 bp (818 high quality bases) assembled on 2006-05-08
> BS11404.5prime
GAAGTTATCAGTCGACATGGCACCCATCGAGAAAGCTAAAAAGGTGGCCA
AGTCGGCCAAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGC
GGTATCCTGCGTTACTCCAAGGCCCAGATGTACAAGCGTCGTGCTCTGTA
CCGCCTGAAGGACAAGAAGAGCCCCGTCGTGGAGAAGGCCAAGGTGCCCA
TCAAGAAGGTGAAGAAGATCGGAGGACCCAAGAACGGCGGTGAGCGCACG
GTCTTCCTGAAGAAGAGCAAGGCCTCCTACCCGACCAAGACGTTCGTGAA
GAAGCGCCCCTCCAAGGCAAACTTCAGCGAGCACAAACGCAACACGCGCC
GCAACCTGACCCCCGGAACCGTGCTCATCCTGCTGGCCGGACGCCACCAG
GGCAAGCGCGTCGTCCTGTTGAAGGTCTTGGCCTCCGGACTCCTGCTGGT
CACCGGACCCTTCGCCCTCAACTCGTGCCCGCTGCGTCGCGTGTCCCAGC
GCTACGTGATCGGCACCTCCTCGAAGGTGGATCTCGGTGCCTTCAAGGTG
CCCGAGCACCTGAACGACGCCTACTTCCGCCGTCTGAAGGCTAAGAAGGA
CAAGAAGACCGGCGAGGCCGACATCTTCGCGGCCAAGAAGGAGCGCTTCG
TGCCCAACGAGCAGCGCAAGAAGGACCAGAAGGAGGTGGACGCCGCCCTG
CTGAAGGTCATCAAGGCCCATCCCGAGGGCAAGTTCTTCGCCAAGTACTT
GCAGAACATGTTTGCCCTGCACTCCTCCCAATACCCCCACCGCATGCGAT
TCTAANAGCTTTCTAGACC
BS11404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11522-PB | 789 | RpL6-RB | 1..789 | 17..805 | 3945 | 100 | Plus |
CG11522-PA | 732 | RpL6-RA | 187..732 | 260..805 | 2730 | 100 | Plus |
CG11522-PA | 732 | RpL6-RA | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-RB | 967 | CG11522-RB | 47..835 | 17..805 | 3945 | 100 | Plus |
RpL6-RA | 910 | CG11522-RA | 233..778 | 260..805 | 2730 | 100 | Plus |
RpL6-RA | 910 | CG11522-RA | 47..238 | 17..208 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31594924..31595604 | 805..125 | 3405 | 100 | Minus |
3R | 32079331 | 3R | 31596048..31596158 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:19:44 has no hits.
BS11404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:00 Download gff for
BS11404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-PB | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:09 Download gff for
BS11404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11522-PB | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:09 Download gff for
BS11404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 42..837 | 8..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:55 Download gff for
BS11404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 42..837 | 8..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:55 Download gff for
BS11404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31594922..31595601 | 128..809 | 99 | <- | Minus |
3R | 31596048..31596163 | 8..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:09 Download gff for
BS11404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27420644..27421323 | 128..809 | 99 | <- | Minus |
arm_3R | 27421770..27421885 | 8..127 | 96 | | Minus |
BS11404.complete Sequence
821 bp assembled on 2006-11-01
GenBank Submission: FJ636854
> BS11404.complete
GAAGTTATCAGTCGACATGGCACCCATCGAGAAAGCTAAAAAGGTGGCCA
AGTCGGCCAAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGC
GGTATCCTGCGTTACTCCAAGGCCCAGATGTACAAGCGTCGTGCTCTGTA
CCGCCTGAAGGACAAGAAGAGCCCCGTCGTGGAGAAGGCCAAGGTGCCCA
TCAAGAAGGTGAAGAAGATCGGAGGACCCAAGAACGGCGGTGAGCGCACG
GTCTTCCTGAAGAAGAGCAAGGCCTCCTACCCGACCAAGACGTTCGTGAA
GAAGCGCCCCTCCAAGGCAAACTTCAGCGAGCACAAACGCAACACGCGCC
GCAACCTGACCCCCGGAACCGTGCTCATCCTGCTGGCCGGACGCCACCAG
GGCAAGCGCGTCGTCCTGTTGAAGGTCTTGGCCTCCGGACTCCTGCTGGT
CACCGGACCCTTCGCCCTCAACTCGTGCCCGCTGCGTCGCGTGTCCCAGC
GCTACGTGATCGGCACCTCCTCGAAGGTGGATCTCGGTGCCTTCAAGGTG
CCCGAGCACCTGAACGACGCCTACTTCCGCCGTCTGAAGGCTAAGAAGGA
CAAGAAGACCGGCGAGGCCGACATCTTCGCGGCCAAGAAGGAGCGCTTCG
TGCCCAACGAGCAGCGCAAGAAGGACCAGAAGGAGGTGGACGCCGCCCTG
CTGAAGGTCATCAAGGCCCATCCCGAGGGCAAGTTCTTCGCCAAGTACTT
GCAGAACATGTTTGCCCTGCACTCCTCCCAATACCCCCACCGCATGCGAT
TCTAAAAGCTTTCTAGACCAT
BS11404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-RB | 789 | CG11522-PB | 1..789 | 17..805 | 3945 | 100 | Plus |
RpL6-RA | 732 | CG11522-PA | 187..732 | 260..805 | 2730 | 100 | Plus |
RpL6-RA | 732 | CG11522-PA | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-RB | 967 | CG11522-RB | 47..835 | 17..805 | 3945 | 100 | Plus |
RpL6-RA | 910 | CG11522-RA | 233..778 | 260..805 | 2730 | 100 | Plus |
RpL6-RA | 910 | CG11522-RA | 47..238 | 17..208 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31594924..31595604 | 805..125 | 3405 | 100 | Minus |
3R | 32079331 | 3R | 31596048..31596158 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:22:26 has no hits.
BS11404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:04 Download gff for
BS11404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:12 Download gff for
BS11404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 83..878 | 8..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:08 Download gff for
BS11404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 47..833 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:04 Download gff for
BS11404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 83..878 | 8..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:49 Download gff for
BS11404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 47..833 | 17..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:49 Download gff for
BS11404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31594926..31595601 | 128..803 | 100 | <- | Minus |
3R | 31596048..31596158 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:08 Download gff for
BS11404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27420648..27421323 | 128..803 | 100 | <- | Minus |
arm_3R | 27421770..27421880 | 17..127 | 100 | | Minus |
BS11404.pep Sequence
Translation from 16 to 804
> BS11404.pep
MAPIEKAKKVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDK
KSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSK
ANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFA
LNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGE
ADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFA
LHSSQYPHRMRF*
BS11404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-PB | 262 | CG11522-PB | 1..262 | 1..262 | 1335 | 100 | Plus |
RpL6-PA | 243 | CG11522-PA | 1..243 | 1..262 | 1206 | 92.7 | Plus |