Clone Sequence Records
BS11405.complete Sequence
1952 bp assembled on 2009-12-07
GenBank Submission: KX804927
> BS11405.complete
GAAGTTATCAGTCGACATGCTGACCCTGCGGGAGCGCCAAATCAATGCCA
TTAAGCAGATGCTTAATTTGAACTCGCAGCAGCCGAAAGCCCTAGCTGCC
GAGCCCGTGTGGAAGATCCTTATCTACGATCGCGTTGGCCAGGACATCAT
ATCGCCCATTATTTCCATCAAGGAGCTGCGCGAGTTGGGCGTGACGCTGC
ATGTGCAACTGCACTCGGATCGCGACTCCATTCCGGATGTGCCGGCTATA
TACTTCTGCCTGCCCACCGACGAGAATTTGGACAGGATTCAGCAGGACTT
CTCGAGCGGACTGTACGACGTGTACCACCTGAACTTCCTAGCTCCCATAA
CGCGCAGCAAAATCGAGAATCTGGCCGCCGCAGCCCTGCATGCCGGCTGC
GTGGCCAACATCCATCGCGTTTACGACCAGTATGTGAACTTCATCAGTCT
AGAGGATGACTTCTTCATCCTAAAGCACCAGCAGAGCGATCAGCTTTCAT
ACTACGCCATCAACCGGGCCAACACCCGCGATGAAGAGATGGAGGCCCTG
ATGGACTCCATTGTAGACTCGCTCTTCGCCCTGTTTGTGACCCTGGGCAA
TGTGCCCATCATCCGCTGTCCGCGGAACAGTGCCGCTGAAATGGTGGCAC
GCAAGCTGGAGAAGAAGCTGCGCGAGAACCTTTGGGATGCGCGTGCCAAT
TTGTTCCACATGGATGCCACGCAAGCCGGCGGCGGAGTGTTCAGCTTTCA
GAGACCTGTGCTCCTGCTGCTGGACAGGAACATGGATTTAGCCACGCCGC
TCCATCACACCTGGTCGTATCAGGCGCTTGTGCACGATGTACTGGACTTG
GGACTGAATCTTGTCTACGTGGAGGACGAGACGGCTAGTGCGGGAGCCCG
CAAAAAACCCAAGGCCTGTGACTTGGACCGCAACGACCGCTTCTGGATGA
CGCACAAGGGCAGTCCATTTCCCACGGTGGCCGAAGCCATCCAGGAGGAG
CTGGAATCCTATCGGAACTCCGAGGAGGAGATCAAGCGCTTGAAGACATC
GATGGGTATCGAGGGCGAGTCGGACATTGCATTCTCTTTGGTCAATGACA
CAACGGCCAGGCTCACCAATGCCGTCAATTCGCTGCCCCAACTGATGGAG
AAGAAGCGACTGATCGACATGCACACCAAGATCGCCACTGCAATCCTGAA
CTTCATTAAGGCTCGACGACTGGATTCGTTTTTTGAGATCGAGGAGAAGG
TCATGTCGAAGCAGACACTGGACAGACCGCTGCTGGACCTACTGCGAGAT
GGAGAGTTTGGTCAGGCGGAGGACAAGCTGCGCCTGTATATCATCTACTT
TATCTGCGCCCAGCAGTTACCCGAATCGGAGCAGGAGCGGCTCAAGGAGG
CGCTGCAGGCTGCCGGTTGTGACCTAACTGCCCTTGCGTACGTGCAACGA
TGGAAGGGAATCATGAACCGCTCGCCGAGCATTAGCCAAGCCACACAGTA
CGAGGGTGGCGGCACCAAGACTGTGTCCATGTTCACTAAACTCGTCTCAC
AGGGCAGCTCCTTCGTGATGGAGGGCGTCAAGAATCTGGTGGTCAAGCGA
CATAATCTTCCGGTGACCAAGATCACCGAGCAGGTGATGGAGTGCCGCAG
CAATGCGGAGACGGATGACTACCTTTATCTGGATCCAAAGCTGCTCAAAG
GTGGCGAGGTCCTGCCCAAAAATCGTGCTCCATTCCAGGACGCCGTGGTG
TTCATGGTCGGCGGAGGCAACTACATCGAGTACCAGAACCTGGTGGACTT
CATCAAACAGAAGCAAACGTCCAATGTGCAACGGCGCATCATTTATGGCG
CTTCCACGCTGACCAACGCGAGGCAGTTCCTCAAGGAGCTCTCCGCCCTG
GGCGGCGAGATCCAGTCGCCGACGGCGACGAGTTAGAAGCTTTCTAGACC
AT
BS11405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 1920 | CG3539-PG | 1..1920 | 17..1936 | 9585 | 99.9 | Plus |
| Slh-RC | 1920 | CG3539-PC | 1..1920 | 17..1936 | 9585 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 4220 | CG3539-RG | 152..2075 | 17..1940 | 9590 | 99.9 | Plus |
| Slh-RC | 2197 | CG3539-RC | 152..2075 | 17..1940 | 9590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2490733..2491443 | 1603..893 | 3555 | 100 | Minus |
| 2L | 23513712 | 2L | 2491512..2492201 | 894..205 | 3435 | 99.9 | Minus |
| 2L | 23513712 | 2L | 2490342..2490678 | 1940..1604 | 1670 | 99.7 | Minus |
| 2L | 23513712 | 2L | 2492258..2492418 | 205..45 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:12:18 has no hits.
BS11405.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:53 Download gff for
BS11405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 147..2066 | 17..1936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:36 Download gff for
BS11405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..2071 | 17..1936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:38 Download gff for
BS11405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 147..2066 | 17..1936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:16 Download gff for
BS11405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..2071 | 17..1936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:16 Download gff for
BS11405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2490346..2490678 | 1604..1936 | 100 | <- | Minus |
| 2L | 2490733..2491439 | 897..1603 | 100 | <- | Minus |
| 2L | 2491509..2492201 | 205..896 | 99 | <- | Minus |
| 2L | 2492259..2492418 | 45..204 | 100 | <- | Minus |
| 2L | 2492493..2492520 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:36 Download gff for
BS11405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2490346..2490678 | 1604..1936 | 100 | <- | Minus |
| arm_2L | 2490733..2491439 | 897..1603 | 100 | <- | Minus |
| arm_2L | 2491509..2492201 | 205..896 | 99 | <- | Minus |
| arm_2L | 2492259..2492418 | 45..204 | 100 | <- | Minus |
| arm_2L | 2492493..2492520 | 17..44 | 100 | | Minus |
BS11405.3prime Sequence
863 bp (862 high quality bases) assembled on 2006-05-08
> BS11405.3prime
ATGGTCTAGAAAGCTTCTAACTCGTCGCCGTCGGCGACTGGATCTCGCCG
CCCAGGGCGGAGAGCTCCTTGAGGAACTGCCTCGCGTTGGTCAGCGTGGA
AGCGCCATAAATGATGCGCCGTTGCACATTGGACGTTTGCTTCTGTTTGA
TGAAGTCCACCAGGTTCTGGTACTCGATGTAGTTGCCTCCGCCGACCATG
AACACCACGGCGTCCTGGAATGGAGCACGATTTTTGGGCAGGACCTCGCC
ACCTTTGAGCAGCTTTGGATCCAGATAAAGGTAGTCATCCGTCTCCGCAT
TGCTGCGGCACTCCATCACCTGCTCGGTGATCTTGGTCACCGGAAGATTA
TGTCGCTTGACCACCAGATTCTTGACGCCCTCCATCACGAAGGAGCTGCC
CTGTGAGACGAGTTTAGTGAACATGGACACAGTCTTGGTGCCGCCACCCT
CGTACTGTGTGGCTTGGCTAATGCTCGGCGAGCGGTTCATGATTCCCTTC
CATCGTTGCACGTACGCAAGGGCAGTTAGGTCACAACCGGCAGCCTGCAG
CGCCTCCTTGAGCCGCTCCTGCTCCGATTCGGGTAACTGCTGGGCGCAGA
TAAAGTAGATGATATACAGGCGCAGCTTGTCCTCCGCCTGACCAAACTCT
CCATCTCGCAGTAGGTCCAGCAGCGGTCTGTCCAGTGTCTGCTTCGACAT
GACCTTCTCCTCGATCTCAAAAAACGAATCCAGTCGTCGAGCCTTAATGA
AGTTCAGGATTGCAGTGGCGATCTTGGTGTGCATGTCGATCAGTCGCTTC
TTCTCCATCAGTTGGGGCAGCGAATTGACGGCATTGGTGAGCCTGGCCGT
TGTGTCATTGACC
BS11405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3539-PC | 1920 | Slh-RC | 1074..1920 | 863..17 | 4235 | 100 | Minus |
| CG3539-PD | 1974 | Slh-RD | 1074..1587 | 863..350 | 2570 | 100 | Minus |
| CG3539-PD | 1974 | Slh-RD | 1642..1974 | 349..17 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 4220 | CG3539-RG | 1225..2075 | 863..13 | 4240 | 99.9 | Minus |
| Slh-RC | 2197 | CG3539-RC | 1225..2075 | 863..13 | 4240 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2490733..2491246 | 350..863 | 2570 | 100 | Plus |
| 2L | 23513712 | 2L | 2490342..2490678 | 13..349 | 1670 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:24:40 has no hits.
BS11405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:01 Download gff for
BS11405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3539-PB | 1074..1920 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:10 Download gff for
BS11405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3539-PC | 1074..1920 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:51 Download gff for
BS11405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 1225..2079 | 8..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:07 Download gff for
BS11405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 1225..2079 | 8..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:07 Download gff for
BS11405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2490351..2490678 | 22..349 | 100 | <- | Plus |
| 2L | 2490733..2491246 | 350..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:51 Download gff for
BS11405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2490351..2490678 | 22..349 | 100 | <- | Plus |
| arm_2L | 2490733..2491246 | 350..863 | 100 | | Plus |
BS11405.5prime Sequence
905 bp (820 high quality bases) assembled on 2006-05-08
> BS11405.5prime
GAAGTTATCAGTCGACATGCTGACCCTGCGGGAGCGCCAAATCAATGCCA
TTAAGCAGATGCTTAATTTGAACTCGCAGCAGCCGAAAGCCCTAGCTGCC
GAGCCCGTGTGGAAGATCCTTATCTACGATCGCGTTGGCCAGGACATCAT
ATCGCCCATTATTTCCATCAAGGAGCTGCGCGAGTTGGGCGTGACGCTGC
ATGTGCAACTGCACTCGGATCGCGACTCCATTCCGGATGTGCCGGCTATA
TACTTCTGCCTGCCCACCGACGAGAATTTGGACAGGATTCAGCAGGACTT
CTCGAGCGGACTGTACGACGTGTACCACCTGAACTTCCTAGCTCCCATAA
CGCGCAGCAAAATCGAGAATCTGGCCGCCGCAGCCCTGCATGCCGGCTGC
GTGGCCAACATCCATCGCGTTTACGACCAGTATGTGAACTTCATCAGTCT
AGAGGATGACTTCTTCATCCTAAAGCACCAGCAGAGCGATCAGCTTTCAT
ACTACGCCATCAACCGGGCCAACACCCGCGATGAAGAGATGGAGGCCCTG
ATGGACTCCATTGTAGACTCGCTCTTCGCCCTGTTTGTGACCCTGGGCAA
TGTGCCCATCATCCGCTGTCCGCGGAACAGTGCCGCTGAAATGGTGGCAC
GCAAGCTGGAGAAGAAGCTGCGCGAGAACCTTTGGGATGCGCGTGCCAAT
TTGTTCCACATGGATGCCACGCAAGCCGGCGGCGGAGTGTTCAGCTTTCA
GAGACCTGTGCTCCTGCTGCTGGACAGGAACATGGATTTAGCCACGCCGC
TCCATCACACCTGGTCGTATCAGGCGCTTGTGCACGATGTACTGGACTTG
GGACTGAATCTTGTCTACGTGGAGGACGAGACGGCTAGTGCGGGAGCCCC
GCAAA
BS11405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3539-PC | 1920 | Slh-RC | 1..883 | 17..899 | 4390 | 99.8 | Plus |
| CG3539-PD | 1974 | Slh-RD | 1..883 | 17..899 | 4390 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 4220 | CG3539-RG | 152..1039 | 17..905 | 4405 | 99.8 | Plus |
| Slh-RC | 2197 | CG3539-RC | 152..1039 | 17..905 | 4405 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2491512..2492201 | 894..205 | 3435 | 99.9 | Minus |
| 2L | 23513712 | 2L | 2492258..2492418 | 205..45 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:24:29 has no hits.
BS11405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:02 Download gff for
BS11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-PD | 1..885 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:11 Download gff for
BS11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3539-PD | 1..885 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:56 Download gff for
BS11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..1036 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:24 Download gff for
BS11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..1036 | 17..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:24 Download gff for
BS11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2491512..2492201 | 205..894 | 99 | <- | Minus |
| 2L | 2492259..2492418 | 45..204 | 100 | <- | Minus |
| 2L | 2492493..2492520 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:56 Download gff for
BS11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2491512..2492201 | 205..894 | 99 | <- | Minus |
| arm_2L | 2492259..2492418 | 45..204 | 100 | <- | Minus |
| arm_2L | 2492493..2492520 | 17..44 | 100 | | Minus |
BS11405.pep Sequence
Translation from 16 to 1935
> BS11405.pep
MLTLRERQINAIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIIS
IKELRELGVTLHVQLHSDRDSIPDVPAIYFCLPTDENLDRIQQDFSSGLY
DVYHLNFLAPITRSKIENLAAAALHAGCVANIHRVYDQYVNFISLEDDFF
ILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFALFVTLGNVPIIR
CPRNSAAEMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQRPVLL
LLDRNMDLATPLHHTWSYQALVHDVLDLGLNLVYVEDETASAGARKKPKA
CDLDRNDRFWMTHKGSPFPTVAEAIQEELESYRNSEEEIKRLKTSMGIEG
ESDIAFSLVNDTTARLTNAVNSLPQLMEKKRLIDMHTKIATAILNFIKAR
RLDSFFEIEEKVMSKQTLDRPLLDLLRDGEFGQAEDKLRLYIIYFICAQQ
LPESEQERLKEALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGGGT
KTVSMFTKLVSQGSSFVMEGVKNLVVKRHNLPVTKITEQVMECRSNAETD
DYLYLDPKLLKGGEVLPKNRAPFQDAVVFMVGGGNYIEYQNLVDFIKQKQ
TSNVQRRIIYGASTLTNARQFLKELSALGGEIQSPTATS*
BS11405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-PG | 639 | CG3539-PG | 1..639 | 1..639 | 3259 | 100 | Plus |
| Slh-PC | 639 | CG3539-PC | 1..639 | 1..639 | 3259 | 100 | Plus |
| Vps45-PA | 574 | CG8228-PA | 20..558 | 30..633 | 280 | 22 | Plus |
| Rop-PB | 597 | CG15811-PB | 39..435 | 32..459 | 219 | 21.9 | Plus |
| Rop-PA | 597 | CG15811-PA | 39..435 | 32..459 | 219 | 21.9 | Plus |
