Clone Sequence Records
BS11408.3prime Sequence
465 bp (464 high quality bases) assembled on 2006-05-08
> BS11408.3prime
ATGGTCTAGAAAGCTTCTAGGCATGAATGTCCTTGTAGTGCTTGTCATCG
TCGGCCTTATCCAGTTTGATGGAGTATTTGCCGATCATAGAGCCCTCCAC
GTTGGCTATGCCATCGGGATTGAACGAAGGACCATTGCCGACATCCTCGA
TCTCGTCCTTGAGCACCCTGTAGCCGTCCTTATCGGCGATGTACTCAACA
CGGCGCTTCACGAAACCATCGAAGTAGCTGTAGGAACCACGAACAGTGCC
TCCTTCGCGCTCCTCATTACGTGAGATTTGTCCATCGTTGATCTTATCAT
CCACACTCGAATTGAACGAGTACTGGGCGTTTTCATTCTGATATTTCTCG
TACTCCTCCCTCTCTATCCTTTCGGCTTCGGATTCCTGGCGGGGAGGAGC
TGCCATGCAGAGGGCGACCAGCAGGCTGGCGATCAACACGAATTTGTACA
TGTCGACTGATAACT
BS11408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10112-PA | 435 | CG10112-RA | 1..435 | 451..17 | 2175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr51A-RA | 651 | CG10112-RA | 84..518 | 451..17 | 2175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14512692..14513066 | 17..391 | 1875 | 100 | Plus |
2R | 25286936 | 2R | 14515069..14515128 | 392..451 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:42:13 has no hits.
BS11408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:08 Download gff for
BS11408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10112-PA | 1..435 | 17..451 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:19 Download gff for
BS11408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10112-PA | 1..435 | 17..451 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:42:16 Download gff for
BS11408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr51A-RA | 76..521 | 13..459 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:40 Download gff for
BS11408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr51A-RA | 76..521 | 13..459 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:40 Download gff for
BS11408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14512689..14513066 | 13..391 | 99 | <- | Plus |
2R | 14515069..14515136 | 392..459 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:42:16 Download gff for
BS11408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10400194..10400571 | 13..391 | 99 | <- | Plus |
arm_2R | 10402574..10402641 | 392..459 | 94 | | Plus |
BS11408.5prime Sequence
465 bp (464 high quality bases) assembled on 2006-05-08
> BS11408.5prime
GAAGTTATCAGTCGACATGTACAAATTCGTGTTGATCGCCAGCCTGCTGG
TCGCCCTCTGCATGGCAGCTCCTCCCCGCCAGGAATCCGAAGCCGAAAGG
ATAGAGAGGGAGGAGTACGAGAAATATCAGAATGAAAACGCCCAGTACTC
GTTCAATTCGAGTGTGGATGATAAGATCAACGATGGACAAATCTCACGTA
ATGAGGAGCGCGAAGGAGGCACTGTTCGTGGTTCCTACAGCTACTTCGAT
GGTTTCGTGAAGCGCCGTGTTGAGTACATCGCCGATAAGGACGGCTACAG
GGTGCTCAAGGACGAGATCGAGGATGTCGGCAATGGTCCTTCGTTCAATC
CCGATGGCATAGCCAACGTGGAGGGCTCTATGATCGGCAAATACTCCATC
AAACTGGATAAGGCCGACGATGACAAGCACTACAAGGACATTCATGCCTA
GAAGCTTTCTAGACC
BS11408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10112-PA | 435 | CG10112-RA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr51A-RA | 651 | CG10112-RA | 84..518 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14512692..14513066 | 451..77 | 1875 | 100 | Minus |
2R | 25286936 | 2R | 14515069..14515128 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:32:47 has no hits.
BS11408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:09 Download gff for
BS11408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10112-PA | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:20 Download gff for
BS11408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10112-PA | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:05 Download gff for
BS11408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr51A-RA | 76..521 | 9..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:30:29 Download gff for
BS11408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr51A-RA | 76..521 | 9..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:30:29 Download gff for
BS11408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14512689..14513066 | 77..455 | 99 | <- | Minus |
2R | 14515069..14515136 | 9..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:05 Download gff for
BS11408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10400194..10400571 | 77..455 | 99 | <- | Minus |
arm_2R | 10402574..10402641 | 9..76 | 94 | | Minus |
BS11408.complete Sequence
467 bp assembled on 2006-11-01
GenBank Submission: FJ636855
> BS11408.complete
GAAGTTATCAGTCGACATGTACAAATTCGTGTTGATCGCCAGCCTGCTGG
TCGCCCTCTGCATGGCAGCTCCTCCCCGCCAGGAATCCGAAGCCGAAAGG
ATAGAGAGGGAGGAGTACGAGAAATATCAGAATGAAAACGCCCAGTACTC
GTTCAATTCGAGTGTGGATGATAAGATCAACGATGGACAAATCTCACGTA
ATGAGGAGCGCGAAGGAGGCACTGTTCGTGGTTCCTACAGCTACTTCGAT
GGTTTCGTGAAGCGCCGTGTTGAGTACATCGCCGATAAGGACGGCTACAG
GGTGCTCAAGGACGAGATCGAGGATGTCGGCAATGGTCCTTCGTTCAATC
CCGATGGCATAGCCAACGTGGAGGGCTCTATGATCGGCAAATACTCCATC
AAACTGGATAAGGCCGACGATGACAAGCACTACAAGGACATTCATGCCTA
GAAGCTTTCTAGACCAT
BS11408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr51A-RA | 435 | CG10112-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr51A-RA | 651 | CG10112-RA | 84..518 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14512692..14513066 | 451..77 | 1875 | 100 | Minus |
2R | 25286936 | 2R | 14515069..14515128 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:12:00 has no hits.
BS11408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:05 Download gff for
BS11408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr51A-RA | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:15 Download gff for
BS11408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr51A-RA | 73..518 | 9..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:55 Download gff for
BS11408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr51A-RA | 84..518 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:05 Download gff for
BS11408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr51A-RA | 73..518 | 9..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:12 Download gff for
BS11408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr51A-RA | 84..518 | 17..451 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:12 Download gff for
BS11408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14512692..14513066 | 77..451 | 100 | <- | Minus |
2R | 14515069..14515128 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:55 Download gff for
BS11408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10400197..10400571 | 77..451 | 100 | <- | Minus |
arm_2R | 10402574..10402633 | 17..76 | 100 | | Minus |
BS11408.pep Sequence
Translation from 16 to 450
> BS11408.pep
MYKFVLIASLLVALCMAAPPRQESEAERIEREEYEKYQNENAQYSFNSSV
DDKINDGQISRNEEREGGTVRGSYSYFDGFVKRRVEYIADKDGYRVLKDE
IEDVGNGPSFNPDGIANVEGSMIGKYSIKLDKADDDKHYKDIHA*
BS11408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr51A-PA | 144 | CG10112-PA | 1..144 | 1..144 | 750 | 100 | Plus |