Clone BS11408 Report

Search the DGRC for BS11408

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCpr51A-RA
Protein status:BS11408.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11408.3prime Sequence

465 bp (464 high quality bases) assembled on 2006-05-08

> BS11408.3prime
ATGGTCTAGAAAGCTTCTAGGCATGAATGTCCTTGTAGTGCTTGTCATCG
TCGGCCTTATCCAGTTTGATGGAGTATTTGCCGATCATAGAGCCCTCCAC
GTTGGCTATGCCATCGGGATTGAACGAAGGACCATTGCCGACATCCTCGA
TCTCGTCCTTGAGCACCCTGTAGCCGTCCTTATCGGCGATGTACTCAACA
CGGCGCTTCACGAAACCATCGAAGTAGCTGTAGGAACCACGAACAGTGCC
TCCTTCGCGCTCCTCATTACGTGAGATTTGTCCATCGTTGATCTTATCAT
CCACACTCGAATTGAACGAGTACTGGGCGTTTTCATTCTGATATTTCTCG
TACTCCTCCCTCTCTATCCTTTCGGCTTCGGATTCCTGGCGGGGAGGAGC
TGCCATGCAGAGGGCGACCAGCAGGCTGGCGATCAACACGAATTTGTACA
TGTCGACTGATAACT

BS11408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10112-PA 435 CG10112-RA 1..435 451..17 2175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr51A-RA 651 CG10112-RA 84..518 451..17 2175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14512692..14513066 17..391 1875 100 Plus
2R 25286936 2R 14515069..14515128 392..451 300 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:42:13 has no hits.

BS11408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:08 Download gff for BS11408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10112-PA 1..435 17..451 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:19 Download gff for BS11408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10112-PA 1..435 17..451 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:42:16 Download gff for BS11408.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr51A-RA 76..521 13..459 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:40 Download gff for BS11408.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr51A-RA 76..521 13..459 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:40 Download gff for BS11408.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14512689..14513066 13..391 99 <- Plus
2R 14515069..14515136 392..459 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:42:16 Download gff for BS11408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10400194..10400571 13..391 99 <- Plus
arm_2R 10402574..10402641 392..459 94   Plus

BS11408.5prime Sequence

465 bp (464 high quality bases) assembled on 2006-05-08

> BS11408.5prime
GAAGTTATCAGTCGACATGTACAAATTCGTGTTGATCGCCAGCCTGCTGG
TCGCCCTCTGCATGGCAGCTCCTCCCCGCCAGGAATCCGAAGCCGAAAGG
ATAGAGAGGGAGGAGTACGAGAAATATCAGAATGAAAACGCCCAGTACTC
GTTCAATTCGAGTGTGGATGATAAGATCAACGATGGACAAATCTCACGTA
ATGAGGAGCGCGAAGGAGGCACTGTTCGTGGTTCCTACAGCTACTTCGAT
GGTTTCGTGAAGCGCCGTGTTGAGTACATCGCCGATAAGGACGGCTACAG
GGTGCTCAAGGACGAGATCGAGGATGTCGGCAATGGTCCTTCGTTCAATC
CCGATGGCATAGCCAACGTGGAGGGCTCTATGATCGGCAAATACTCCATC
AAACTGGATAAGGCCGACGATGACAAGCACTACAAGGACATTCATGCCTA
GAAGCTTTCTAGACC

BS11408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10112-PA 435 CG10112-RA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr51A-RA 651 CG10112-RA 84..518 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14512692..14513066 451..77 1875 100 Minus
2R 25286936 2R 14515069..14515128 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:32:47 has no hits.

BS11408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:09 Download gff for BS11408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10112-PA 1..435 17..451 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:20 Download gff for BS11408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10112-PA 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:05 Download gff for BS11408.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr51A-RA 76..521 9..455 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:30:29 Download gff for BS11408.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr51A-RA 76..521 9..455 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:30:29 Download gff for BS11408.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14512689..14513066 77..455 99 <- Minus
2R 14515069..14515136 9..76 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:05 Download gff for BS11408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10400194..10400571 77..455 99 <- Minus
arm_2R 10402574..10402641 9..76 94   Minus

BS11408.complete Sequence

467 bp assembled on 2006-11-01

GenBank Submission: FJ636855

> BS11408.complete
GAAGTTATCAGTCGACATGTACAAATTCGTGTTGATCGCCAGCCTGCTGG
TCGCCCTCTGCATGGCAGCTCCTCCCCGCCAGGAATCCGAAGCCGAAAGG
ATAGAGAGGGAGGAGTACGAGAAATATCAGAATGAAAACGCCCAGTACTC
GTTCAATTCGAGTGTGGATGATAAGATCAACGATGGACAAATCTCACGTA
ATGAGGAGCGCGAAGGAGGCACTGTTCGTGGTTCCTACAGCTACTTCGAT
GGTTTCGTGAAGCGCCGTGTTGAGTACATCGCCGATAAGGACGGCTACAG
GGTGCTCAAGGACGAGATCGAGGATGTCGGCAATGGTCCTTCGTTCAATC
CCGATGGCATAGCCAACGTGGAGGGCTCTATGATCGGCAAATACTCCATC
AAACTGGATAAGGCCGACGATGACAAGCACTACAAGGACATTCATGCCTA
GAAGCTTTCTAGACCAT

BS11408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr51A-RA 435 CG10112-PA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr51A-RA 651 CG10112-RA 84..518 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14512692..14513066 451..77 1875 100 Minus
2R 25286936 2R 14515069..14515128 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:12:00 has no hits.

BS11408.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:05 Download gff for BS11408.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr51A-RA 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:15 Download gff for BS11408.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr51A-RA 73..518 9..455 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:55 Download gff for BS11408.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr51A-RA 84..518 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:05 Download gff for BS11408.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr51A-RA 73..518 9..455 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:12 Download gff for BS11408.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr51A-RA 84..518 17..451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:12 Download gff for BS11408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14512692..14513066 77..451 100 <- Minus
2R 14515069..14515128 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:55 Download gff for BS11408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10400197..10400571 77..451 100 <- Minus
arm_2R 10402574..10402633 17..76 100   Minus

BS11408.pep Sequence

Translation from 16 to 450

> BS11408.pep
MYKFVLIASLLVALCMAAPPRQESEAERIEREEYEKYQNENAQYSFNSSV
DDKINDGQISRNEEREGGTVRGSYSYFDGFVKRRVEYIADKDGYRVLKDE
IEDVGNGPSFNPDGIANVEGSMIGKYSIKLDKADDDKHYKDIHA*

BS11408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr51A-PA 144 CG10112-PA 1..144 1..144 750 100 Plus