Clone BS11409 Report

Search the DGRC for BS11409

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCyp313b1-RA
Protein status:BS11409.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11409.3prime Sequence

894 bp (795 high quality bases) assembled on 2006-05-08

> BS11409.3prime
ATGGTCTAGAAAGCTTTTATCTCCGCTCCACGCGGCACAGCGGGTAATCC
TTAAGCTTCAGGGAGATATTACCCTTGACCAGCAGCTCCTCCAAGCGGGC
CTCCGTGCTGATTCGATAGCTGCGAAAGATCCTGGCCAGCAGCAATTTCA
TCAGCATTTGGGCATATCGGTAGCCTATGCACATGCGCAATCCCTTGGTG
AAGGGAACGAAGGCGAAGGCGTGCCTCTGAGGCGAATCCAATCCGAAATG
CGCATCCGGATTGTAGGTACGCGAAAGTGGTCCCCACACCCGTTCATCCC
GCTGCATGTTGTAGATATCGATGCCGATCTGAGTGCCACGCGGAATAAGG
AACTCCCCGTCGCCGCGCTTCAGCTGGATGTCCTGATCCGCTGATCGCAG
CACCATGGGCACCGGAGCAAACAGCCGCATGGCCTCGTTGATCACCATTT
CGGTGTACTCGAGTCGTTGGAGCTGCTCCAAGTTTATGTCGCCAGACGGC
GGCAGCTCTGTGACCAGTTCCTTGTGCAGCTTCTCCTGGTAGCAGGGATG
CATTGCCAGGCAGAGGATGGTAAAGTACAATGCCGTCGATGTGGTCTCGA
AAGTCGCTGCAATGGTCACATTCGCCTCATCCCTCACATCCTGCCAACTC
AGCTGACCGCGCTCCACATGCTCCCTCACCTGCTCAATGAAAATGGCTTT
GGACTTGCCCCTCATCTCCATTTCGGATCGCTGCTGATCCGGATTGGAAT
TGGCGGCCACTACCGAGACTATGGGTTCGAGAAGCTGTTCTATAAACCCA
AACAGTATGCCGACGACCTTTTGCTGCAAGCGGAAAAGTCCGGAACGACG
ATATATTAAGTCAGGATAGAGCCACGGCGATAGCATTCGTTTTA

BS11409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9716-PA 1509 Cyp313b1-RA 632..1509 894..17 4365 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313b1-RB 2138 CG9716-RB 798..1675 894..17 4375 99.9 Minus
Cyp313b1-RA 2060 CG9716-RA 720..1597 894..17 4375 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8643588..8644176 17..605 2945 100 Plus
3R 32079331 3R 8644226..8644409 605..788 920 100 Plus
3R 32079331 3R 8644469..8644578 785..894 535 99.1 Plus
Blast to na_te.dros performed on 2015-02-11 10:19:37 has no hits.

BS11409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:10 Download gff for BS11409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9716-PA 633..1509 17..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:22 Download gff for BS11409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9716-PA 633..1509 17..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:02:59 Download gff for BS11409.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313b1-RA 721..1597 17..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:41 Download gff for BS11409.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313b1-RA 721..1597 17..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:41 Download gff for BS11409.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8643588..8644175 17..604 100 <- Plus
3R 8644226..8644405 605..784 100 <- Plus
3R 8644469..8644577 785..893 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:02:59 Download gff for BS11409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4469310..4469897 17..604 100 <- Plus
arm_3R 4469948..4470127 605..784 100 <- Plus
arm_3R 4470191..4470299 785..893 99   Plus

BS11409.5prime Sequence

927 bp (861 high quality bases) assembled on 2006-05-08

> BS11409.5prime
GAAGTTATCAGTCGACATGCTGGCCAGCATCATTTTAAGCGGCTGGCTGC
TTTTGGCTTGGTTATACTTCCTGTGGAGCCGGCGAAGGTATTATAAAGTC
GCATGGCAGTTGCGCGGACCCATTGGCTGGCCACTAATAGGCATGGGCTT
ACAAATGATGAACCCGGAGACGTTTTTGCAGTACATGGATGGTCTGTCGC
GACAGTTTAAAGCGCCTTTCATCTCCTGGATGGGCACCAGTTGTTTCCTC
TACATCAACGATCCGCACAGCGTGGAGCAGATATTGAACTCGACGCACTG
CACCAATAAGGGCGATTTCTATCGGTTCATGAGCTCGGCCATTGGTGACG
GACTGTTTACGTCTAGTTCGCCACGTTGGCACAAACATCGTCGCCTCATT
AATCCCGCCTTTGGTCGCCAGATTCTCAGCAACTTCCTGCCCATTTTCAA
TGCCGAAGCAGAGGTCCTTCTGCAGAAGCTGGAGCTCGAGGGTGTGCAGC
ACGGTAAGCGGCTGGAAATCTACCAAATCCTTAAGAAAATCGTTTTGGAA
GCAGCTTGCCAGACAACGATGGGCAAGAAAATGAACTTCCAGCACGATGG
ATCTTTATGCATATTTAAAGCTTATAATGGCTTGACCGAAGTGTGTGTAA
AACGAATGCTATCGCCGTGGCTCTATCCTGACTTAATATATCGTCGTTCC
GGACTTTTCCGCCTGCAGCAAAAGGTCGTCGGCATACTGTTTGGGTTTAT
AGAACAGCTTCTCGAACCCATAGTCTCGGTAGTGGCCGCCAATTCCAATC
CGGATCAGCAGCGATCCGAAATGGAGATGAGGGGCAAGTCCAAAGCCATT
TTCATTGAGCAGGTGAGGGAGCATGTGGAGCGCGGTCAGCTGAGTTGGCA
GGATGTGAGGGATGAGGCGAATGTGAC

BS11409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9716-PA 1509 Cyp313b1-RA 1..911 17..927 4555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313b1-RB 2138 CG9716-RB 162..1077 12..927 4580 100 Plus
Cyp313b1-RA 2060 CG9716-RA 84..999 12..927 4580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8644772..8645161 560..171 1950 100 Minus
3R 32079331 3R 8644236..8644409 927..754 870 100 Minus
3R 32079331 3R 8645217..8645375 170..12 795 100 Minus
3R 32079331 3R 8644469..8644596 757..630 640 100 Minus
3R 32079331 3R 8644648..8644717 630..561 350 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:33:39 has no hits.

BS11409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:11 Download gff for BS11409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9716-PA 1..911 17..927 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:24 Download gff for BS11409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9716-PA 1..911 17..927 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:47 Download gff for BS11409.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313b1-RA 74..999 1..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:54:07 Download gff for BS11409.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313b1-RA 74..999 1..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:54:07 Download gff for BS11409.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8644236..8644405 758..927 100 <- Minus
3R 8644469..8644595 631..757 100 <- Minus
3R 8644648..8644717 561..630 100 <- Minus
3R 8644772..8645161 171..560 100 <- Minus
3R 8645217..8645381 1..170 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:47 Download gff for BS11409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4469958..4470127 758..927 100 <- Minus
arm_3R 4470191..4470317 631..757 100 <- Minus
arm_3R 4470370..4470439 561..630 100 <- Minus
arm_3R 4470494..4470883 171..560 100 <- Minus
arm_3R 4470939..4471103 1..170 97   Minus

BS11409.complete Sequence

1541 bp assembled on 2006-11-01

GenBank Submission: FJ636856

> BS11409.complete
GAAGTTATCAGTCGACATGCTGGCCAGCATCATTTTAAGCGGCTGGCTGC
TTTTGGCTTGGTTATACTTCCTGTGGAGCCGGCGAAGGTATTATAAAGTC
GCATGGCAGTTGCGCGGACCCATTGGCTGGCCACTAATAGGCATGGGCTT
ACAAATGATGAACCCGGAGACGTTTTTGCAGTACATGGATGGTCTGTCGC
GACAGTTTAAAGCGCCTTTCATCTCCTGGATGGGCACCAGTTGTTTCCTC
TACATCAACGATCCGCACAGCGTGGAGCAGATATTGAACTCGACGCACTG
CACCAATAAGGGCGATTTCTATCGGTTCATGAGCTCGGCCATTGGTGACG
GACTGTTTACGTCTAGTTCGCCACGTTGGCACAAACATCGTCGCCTCATT
AATCCCGCCTTTGGTCGCCAGATTCTCAGCAACTTCCTGCCCATTTTCAA
TGCCGAAGCAGAGGTCCTTCTGCAGAAGCTGGAGCTCGAGGGTGTGCAGC
ACGGTAAGCGGCTGGAAATCTACCAAATCCTTAAGAAAATCGTTTTGGAA
GCAGCTTGCCAGACAACGATGGGCAAGAAAATGAACTTCCAGCACGATGG
ATCTTTATGCATATTTAAAGCTTATAATGGCTTGACCGAAGTGTGTGTAA
AACGAATGCTATCGCCGTGGCTCTATCCTGACTTAATATATCGTCGTTCC
GGACTTTTCCGCCTGCAGCAAAAGGTCGTCGGCATACTGTTTGGGTTTAT
AGAACAGCTTCTCGAACCCATAGTCTCGGTAGTGGCCGCCAATTCCAATC
CGGATCAGCAGCGATCCGAAATGGAGATGAGGGGCAAGTCCAAAGCCATT
TTCATTGAGCAGGTGAGGGAGCATGTGGAGCGCGGTCAGCTGAGTTGGCA
GGATGTGAGGGATGAGGCGAATGTGACCATTGCAGCGACTTTCGAGACCA
CATCGACGGCATTGTACTTTACCATCCTCTGCCTGGCAATGCATCCCTGC
TACCAGGAGAAGCTGCACAAGGAACTGGTCACAGAGCTGCCGCCGTCTGG
CGACATAAACTTGGAGCAGCTCCAACGACTCGAGTACACCGAAATGGTGA
TCAACGAGGCCATGCGGCTGTTTGCTCCGGTGCCCATGGTGCTGCGATCA
GCGGATCAGGACATCCAGCTGAAGCGCGGCGACGGGGAGTTCCTTATTCC
GCGTGGCACTCAGATCGGCATCGATATCTACAACATGCAGCGGGATGAAC
GGGTGTGGGGACCACTTTCGCGTACCTACAATCCGGATGCGCATTTCGGA
TTGGATTCGCCTCAGAGGCACGCCTTCGCCTTCGTTCCCTTCACCAAGGG
ATTGCGCATGTGCATAGGCTACCGATATGCCCAAATGCTGATGAAATTGC
TGCTGGCCAGGATCTTTCGCAGCTATCGAATCAGCACGGAGGCCCGCTTG
GAGGAGCTGCTGGTCAAGGGTAATATCTCCCTGAAGCTTAAGGATTACCC
GCTGTGCCGCGTGGAGCGGAGATAAAAGCTTTCTAGACCAT

BS11409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313b1-RB 1509 CG9716-PB 1..1509 17..1525 7545 100 Plus
Cyp313b1-RA 1509 CG9716-PA 1..1509 17..1525 7545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313b1-RB 2138 CG9716-RB 162..1675 12..1525 7570 100 Plus
Cyp313b1-RA 2060 CG9716-RA 84..1597 12..1525 7570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8643588..8644176 1525..937 2945 100 Minus
3R 32079331 3R 8644772..8645161 560..171 1950 100 Minus
3R 32079331 3R 8644226..8644409 937..754 920 100 Minus
3R 32079331 3R 8645217..8645375 170..12 795 100 Minus
3R 32079331 3R 8644469..8644596 757..630 640 100 Minus
3R 32079331 3R 8644648..8644717 630..561 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:46:01 has no hits.

BS11409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:06 Download gff for BS11409.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313b1-RA 1..1509 17..1525 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:17 Download gff for BS11409.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313b1-RA 73..1596 1..1525 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:28 Download gff for BS11409.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313b1-RA 89..1595 17..1523 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:06 Download gff for BS11409.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313b1-RA 73..1596 1..1525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:15 Download gff for BS11409.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313b1-RA 89..1595 17..1523 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:15 Download gff for BS11409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8643590..8644175 938..1523 100 <- Minus
3R 8644226..8644405 758..937 100 <- Minus
3R 8644469..8644595 631..757 100 <- Minus
3R 8644648..8644717 561..630 100 <- Minus
3R 8644772..8645161 171..560 100 <- Minus
3R 8645217..8645370 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:28 Download gff for BS11409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4470370..4470439 561..630 100 <- Minus
arm_3R 4469312..4469897 938..1523 100 <- Minus
arm_3R 4469948..4470127 758..937 100 <- Minus
arm_3R 4470191..4470317 631..757 100 <- Minus
arm_3R 4470494..4470883 171..560 100 <- Minus
arm_3R 4470939..4471092 17..170 100   Minus

BS11409.pep Sequence

Translation from 16 to 1524

> BS11409.pep
MLASIILSGWLLLAWLYFLWSRRRYYKVAWQLRGPIGWPLIGMGLQMMNP
ETFLQYMDGLSRQFKAPFISWMGTSCFLYINDPHSVEQILNSTHCTNKGD
FYRFMSSAIGDGLFTSSSPRWHKHRRLINPAFGRQILSNFLPIFNAEAEV
LLQKLELEGVQHGKRLEIYQILKKIVLEAACQTTMGKKMNFQHDGSLCIF
KAYNGLTEVCVKRMLSPWLYPDLIYRRSGLFRLQQKVVGILFGFIEQLLE
PIVSVVAANSNPDQQRSEMEMRGKSKAIFIEQVREHVERGQLSWQDVRDE
ANVTIAATFETTSTALYFTILCLAMHPCYQEKLHKELVTELPPSGDINLE
QLQRLEYTEMVINEAMRLFAPVPMVLRSADQDIQLKRGDGEFLIPRGTQI
GIDIYNMQRDERVWGPLSRTYNPDAHFGLDSPQRHAFAFVPFTKGLRMCI
GYRYAQMLMKLLLARIFRSYRISTEARLEELLVKGNISLKLKDYPLCRVE
RR*

BS11409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313b1-PB 502 CG9716-PB 1..502 1..502 2637 100 Plus
Cyp313b1-PA 502 CG9716-PA 1..502 1..502 2637 100 Plus
Cyp313a4-PA 494 CG6802-PA 1..493 1..502 874 35 Plus
Cyp313a1-PA 492 CG3360-PA 13..491 13..502 674 31 Plus
Cyp318a1-PA 536 CG1786-PA 20..521 20..493 623 29.2 Plus