Clone Sequence Records
BS11409.3prime Sequence
894 bp (795 high quality bases) assembled on 2006-05-08
> BS11409.3prime
ATGGTCTAGAAAGCTTTTATCTCCGCTCCACGCGGCACAGCGGGTAATCC
TTAAGCTTCAGGGAGATATTACCCTTGACCAGCAGCTCCTCCAAGCGGGC
CTCCGTGCTGATTCGATAGCTGCGAAAGATCCTGGCCAGCAGCAATTTCA
TCAGCATTTGGGCATATCGGTAGCCTATGCACATGCGCAATCCCTTGGTG
AAGGGAACGAAGGCGAAGGCGTGCCTCTGAGGCGAATCCAATCCGAAATG
CGCATCCGGATTGTAGGTACGCGAAAGTGGTCCCCACACCCGTTCATCCC
GCTGCATGTTGTAGATATCGATGCCGATCTGAGTGCCACGCGGAATAAGG
AACTCCCCGTCGCCGCGCTTCAGCTGGATGTCCTGATCCGCTGATCGCAG
CACCATGGGCACCGGAGCAAACAGCCGCATGGCCTCGTTGATCACCATTT
CGGTGTACTCGAGTCGTTGGAGCTGCTCCAAGTTTATGTCGCCAGACGGC
GGCAGCTCTGTGACCAGTTCCTTGTGCAGCTTCTCCTGGTAGCAGGGATG
CATTGCCAGGCAGAGGATGGTAAAGTACAATGCCGTCGATGTGGTCTCGA
AAGTCGCTGCAATGGTCACATTCGCCTCATCCCTCACATCCTGCCAACTC
AGCTGACCGCGCTCCACATGCTCCCTCACCTGCTCAATGAAAATGGCTTT
GGACTTGCCCCTCATCTCCATTTCGGATCGCTGCTGATCCGGATTGGAAT
TGGCGGCCACTACCGAGACTATGGGTTCGAGAAGCTGTTCTATAAACCCA
AACAGTATGCCGACGACCTTTTGCTGCAAGCGGAAAAGTCCGGAACGACG
ATATATTAAGTCAGGATAGAGCCACGGCGATAGCATTCGTTTTA
BS11409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9716-PA | 1509 | Cyp313b1-RA | 632..1509 | 894..17 | 4365 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313b1-RB | 2138 | CG9716-RB | 798..1675 | 894..17 | 4375 | 99.9 | Minus |
Cyp313b1-RA | 2060 | CG9716-RA | 720..1597 | 894..17 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8643588..8644176 | 17..605 | 2945 | 100 | Plus |
3R | 32079331 | 3R | 8644226..8644409 | 605..788 | 920 | 100 | Plus |
3R | 32079331 | 3R | 8644469..8644578 | 785..894 | 535 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:19:37 has no hits.
BS11409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:10 Download gff for
BS11409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9716-PA | 633..1509 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:22 Download gff for
BS11409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9716-PA | 633..1509 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:02:59 Download gff for
BS11409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313b1-RA | 721..1597 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:41 Download gff for
BS11409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313b1-RA | 721..1597 | 17..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:41 Download gff for
BS11409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8643588..8644175 | 17..604 | 100 | <- | Plus |
3R | 8644226..8644405 | 605..784 | 100 | <- | Plus |
3R | 8644469..8644577 | 785..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:02:59 Download gff for
BS11409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4469310..4469897 | 17..604 | 100 | <- | Plus |
arm_3R | 4469948..4470127 | 605..784 | 100 | <- | Plus |
arm_3R | 4470191..4470299 | 785..893 | 99 | | Plus |
BS11409.5prime Sequence
927 bp (861 high quality bases) assembled on 2006-05-08
> BS11409.5prime
GAAGTTATCAGTCGACATGCTGGCCAGCATCATTTTAAGCGGCTGGCTGC
TTTTGGCTTGGTTATACTTCCTGTGGAGCCGGCGAAGGTATTATAAAGTC
GCATGGCAGTTGCGCGGACCCATTGGCTGGCCACTAATAGGCATGGGCTT
ACAAATGATGAACCCGGAGACGTTTTTGCAGTACATGGATGGTCTGTCGC
GACAGTTTAAAGCGCCTTTCATCTCCTGGATGGGCACCAGTTGTTTCCTC
TACATCAACGATCCGCACAGCGTGGAGCAGATATTGAACTCGACGCACTG
CACCAATAAGGGCGATTTCTATCGGTTCATGAGCTCGGCCATTGGTGACG
GACTGTTTACGTCTAGTTCGCCACGTTGGCACAAACATCGTCGCCTCATT
AATCCCGCCTTTGGTCGCCAGATTCTCAGCAACTTCCTGCCCATTTTCAA
TGCCGAAGCAGAGGTCCTTCTGCAGAAGCTGGAGCTCGAGGGTGTGCAGC
ACGGTAAGCGGCTGGAAATCTACCAAATCCTTAAGAAAATCGTTTTGGAA
GCAGCTTGCCAGACAACGATGGGCAAGAAAATGAACTTCCAGCACGATGG
ATCTTTATGCATATTTAAAGCTTATAATGGCTTGACCGAAGTGTGTGTAA
AACGAATGCTATCGCCGTGGCTCTATCCTGACTTAATATATCGTCGTTCC
GGACTTTTCCGCCTGCAGCAAAAGGTCGTCGGCATACTGTTTGGGTTTAT
AGAACAGCTTCTCGAACCCATAGTCTCGGTAGTGGCCGCCAATTCCAATC
CGGATCAGCAGCGATCCGAAATGGAGATGAGGGGCAAGTCCAAAGCCATT
TTCATTGAGCAGGTGAGGGAGCATGTGGAGCGCGGTCAGCTGAGTTGGCA
GGATGTGAGGGATGAGGCGAATGTGAC
BS11409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9716-PA | 1509 | Cyp313b1-RA | 1..911 | 17..927 | 4555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313b1-RB | 2138 | CG9716-RB | 162..1077 | 12..927 | 4580 | 100 | Plus |
Cyp313b1-RA | 2060 | CG9716-RA | 84..999 | 12..927 | 4580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8644772..8645161 | 560..171 | 1950 | 100 | Minus |
3R | 32079331 | 3R | 8644236..8644409 | 927..754 | 870 | 100 | Minus |
3R | 32079331 | 3R | 8645217..8645375 | 170..12 | 795 | 100 | Minus |
3R | 32079331 | 3R | 8644469..8644596 | 757..630 | 640 | 100 | Minus |
3R | 32079331 | 3R | 8644648..8644717 | 630..561 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:33:39 has no hits.
BS11409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:11 Download gff for
BS11409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9716-PA | 1..911 | 17..927 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:24 Download gff for
BS11409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9716-PA | 1..911 | 17..927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:47 Download gff for
BS11409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313b1-RA | 74..999 | 1..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:54:07 Download gff for
BS11409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313b1-RA | 74..999 | 1..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:54:07 Download gff for
BS11409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8644236..8644405 | 758..927 | 100 | <- | Minus |
3R | 8644469..8644595 | 631..757 | 100 | <- | Minus |
3R | 8644648..8644717 | 561..630 | 100 | <- | Minus |
3R | 8644772..8645161 | 171..560 | 100 | <- | Minus |
3R | 8645217..8645381 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:47 Download gff for
BS11409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4469958..4470127 | 758..927 | 100 | <- | Minus |
arm_3R | 4470191..4470317 | 631..757 | 100 | <- | Minus |
arm_3R | 4470370..4470439 | 561..630 | 100 | <- | Minus |
arm_3R | 4470494..4470883 | 171..560 | 100 | <- | Minus |
arm_3R | 4470939..4471103 | 1..170 | 97 | | Minus |
BS11409.complete Sequence
1541 bp assembled on 2006-11-01
GenBank Submission: FJ636856
> BS11409.complete
GAAGTTATCAGTCGACATGCTGGCCAGCATCATTTTAAGCGGCTGGCTGC
TTTTGGCTTGGTTATACTTCCTGTGGAGCCGGCGAAGGTATTATAAAGTC
GCATGGCAGTTGCGCGGACCCATTGGCTGGCCACTAATAGGCATGGGCTT
ACAAATGATGAACCCGGAGACGTTTTTGCAGTACATGGATGGTCTGTCGC
GACAGTTTAAAGCGCCTTTCATCTCCTGGATGGGCACCAGTTGTTTCCTC
TACATCAACGATCCGCACAGCGTGGAGCAGATATTGAACTCGACGCACTG
CACCAATAAGGGCGATTTCTATCGGTTCATGAGCTCGGCCATTGGTGACG
GACTGTTTACGTCTAGTTCGCCACGTTGGCACAAACATCGTCGCCTCATT
AATCCCGCCTTTGGTCGCCAGATTCTCAGCAACTTCCTGCCCATTTTCAA
TGCCGAAGCAGAGGTCCTTCTGCAGAAGCTGGAGCTCGAGGGTGTGCAGC
ACGGTAAGCGGCTGGAAATCTACCAAATCCTTAAGAAAATCGTTTTGGAA
GCAGCTTGCCAGACAACGATGGGCAAGAAAATGAACTTCCAGCACGATGG
ATCTTTATGCATATTTAAAGCTTATAATGGCTTGACCGAAGTGTGTGTAA
AACGAATGCTATCGCCGTGGCTCTATCCTGACTTAATATATCGTCGTTCC
GGACTTTTCCGCCTGCAGCAAAAGGTCGTCGGCATACTGTTTGGGTTTAT
AGAACAGCTTCTCGAACCCATAGTCTCGGTAGTGGCCGCCAATTCCAATC
CGGATCAGCAGCGATCCGAAATGGAGATGAGGGGCAAGTCCAAAGCCATT
TTCATTGAGCAGGTGAGGGAGCATGTGGAGCGCGGTCAGCTGAGTTGGCA
GGATGTGAGGGATGAGGCGAATGTGACCATTGCAGCGACTTTCGAGACCA
CATCGACGGCATTGTACTTTACCATCCTCTGCCTGGCAATGCATCCCTGC
TACCAGGAGAAGCTGCACAAGGAACTGGTCACAGAGCTGCCGCCGTCTGG
CGACATAAACTTGGAGCAGCTCCAACGACTCGAGTACACCGAAATGGTGA
TCAACGAGGCCATGCGGCTGTTTGCTCCGGTGCCCATGGTGCTGCGATCA
GCGGATCAGGACATCCAGCTGAAGCGCGGCGACGGGGAGTTCCTTATTCC
GCGTGGCACTCAGATCGGCATCGATATCTACAACATGCAGCGGGATGAAC
GGGTGTGGGGACCACTTTCGCGTACCTACAATCCGGATGCGCATTTCGGA
TTGGATTCGCCTCAGAGGCACGCCTTCGCCTTCGTTCCCTTCACCAAGGG
ATTGCGCATGTGCATAGGCTACCGATATGCCCAAATGCTGATGAAATTGC
TGCTGGCCAGGATCTTTCGCAGCTATCGAATCAGCACGGAGGCCCGCTTG
GAGGAGCTGCTGGTCAAGGGTAATATCTCCCTGAAGCTTAAGGATTACCC
GCTGTGCCGCGTGGAGCGGAGATAAAAGCTTTCTAGACCAT
BS11409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313b1-RB | 1509 | CG9716-PB | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Cyp313b1-RA | 1509 | CG9716-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313b1-RB | 2138 | CG9716-RB | 162..1675 | 12..1525 | 7570 | 100 | Plus |
Cyp313b1-RA | 2060 | CG9716-RA | 84..1597 | 12..1525 | 7570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8643588..8644176 | 1525..937 | 2945 | 100 | Minus |
3R | 32079331 | 3R | 8644772..8645161 | 560..171 | 1950 | 100 | Minus |
3R | 32079331 | 3R | 8644226..8644409 | 937..754 | 920 | 100 | Minus |
3R | 32079331 | 3R | 8645217..8645375 | 170..12 | 795 | 100 | Minus |
3R | 32079331 | 3R | 8644469..8644596 | 757..630 | 640 | 100 | Minus |
3R | 32079331 | 3R | 8644648..8644717 | 630..561 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:46:01 has no hits.
BS11409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:06 Download gff for
BS11409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313b1-RA | 1..1509 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:17 Download gff for
BS11409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313b1-RA | 73..1596 | 1..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:28 Download gff for
BS11409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313b1-RA | 89..1595 | 17..1523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:06 Download gff for
BS11409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313b1-RA | 73..1596 | 1..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:15 Download gff for
BS11409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313b1-RA | 89..1595 | 17..1523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:15 Download gff for
BS11409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8643590..8644175 | 938..1523 | 100 | <- | Minus |
3R | 8644226..8644405 | 758..937 | 100 | <- | Minus |
3R | 8644469..8644595 | 631..757 | 100 | <- | Minus |
3R | 8644648..8644717 | 561..630 | 100 | <- | Minus |
3R | 8644772..8645161 | 171..560 | 100 | <- | Minus |
3R | 8645217..8645370 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:28 Download gff for
BS11409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4470370..4470439 | 561..630 | 100 | <- | Minus |
arm_3R | 4469312..4469897 | 938..1523 | 100 | <- | Minus |
arm_3R | 4469948..4470127 | 758..937 | 100 | <- | Minus |
arm_3R | 4470191..4470317 | 631..757 | 100 | <- | Minus |
arm_3R | 4470494..4470883 | 171..560 | 100 | <- | Minus |
arm_3R | 4470939..4471092 | 17..170 | 100 | | Minus |
BS11409.pep Sequence
Translation from 16 to 1524
> BS11409.pep
MLASIILSGWLLLAWLYFLWSRRRYYKVAWQLRGPIGWPLIGMGLQMMNP
ETFLQYMDGLSRQFKAPFISWMGTSCFLYINDPHSVEQILNSTHCTNKGD
FYRFMSSAIGDGLFTSSSPRWHKHRRLINPAFGRQILSNFLPIFNAEAEV
LLQKLELEGVQHGKRLEIYQILKKIVLEAACQTTMGKKMNFQHDGSLCIF
KAYNGLTEVCVKRMLSPWLYPDLIYRRSGLFRLQQKVVGILFGFIEQLLE
PIVSVVAANSNPDQQRSEMEMRGKSKAIFIEQVREHVERGQLSWQDVRDE
ANVTIAATFETTSTALYFTILCLAMHPCYQEKLHKELVTELPPSGDINLE
QLQRLEYTEMVINEAMRLFAPVPMVLRSADQDIQLKRGDGEFLIPRGTQI
GIDIYNMQRDERVWGPLSRTYNPDAHFGLDSPQRHAFAFVPFTKGLRMCI
GYRYAQMLMKLLLARIFRSYRISTEARLEELLVKGNISLKLKDYPLCRVE
RR*
BS11409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313b1-PB | 502 | CG9716-PB | 1..502 | 1..502 | 2637 | 100 | Plus |
Cyp313b1-PA | 502 | CG9716-PA | 1..502 | 1..502 | 2637 | 100 | Plus |
Cyp313a4-PA | 494 | CG6802-PA | 1..493 | 1..502 | 874 | 35 | Plus |
Cyp313a1-PA | 492 | CG3360-PA | 13..491 | 13..502 | 674 | 31 | Plus |
Cyp318a1-PA | 536 | CG1786-PA | 20..521 | 20..493 | 623 | 29.2 | Plus |