Clone BS11410 Report

Search the DGRC for BS11410

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptMob3-RA
Protein status:BS11410.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11410.3prime Sequence

693 bp (692 high quality bases) assembled on 2006-05-08

> BS11410.3prime
ATGGTCTAGAAAGCTTTCAATCCTTATCCTTGCAAATTCGAGATGTCATT
TCTTGTAGGGGTTCCAATTCCTTGGCCGAAATCATGTCAAATTCTTGCAC
AAAGTAGTAAAAATGTTTGTAGCAGGCATTCACGTGAGCTTCCGCTCCAA
TGCTCACAATCCGATCGAAATGGTGAATATAGACGTGGACGAAAACACGA
AAAAGACGGGTTAAAATTTTACGACTTATTGCTATGAAGTTCTTGGGAAA
TGGAACATCCGTGGACACTGGAAAAACAGCTTCGTTGTTAATTTGTGTCT
CAATCCAGTCCATTAAATGCTCAATGTACTTTTGGGCTGAAAGGGCGGTT
GGCTTTTTGTATAGATCTCCATCGGCCCATAAGTACTCATATCTGGAACC
GCCAGACATCGTGGGACACGTAGTTTCGTTGCAAAACTCCGAAACGGTGC
CGTAGATCAAGTTTATGCGATTGAAGAAGTCCACAACGTGCACAGCTAGC
CAGTCGTTGAGATTCTCCCCTTGCGGCAAACGCACCACTTGCCGCAGATT
AATCCCGGATTGCAAACTGGCCTGGGCTTGCTTATGTAAGGAATACCTAA
TGGTTCCGGAGGCAAATGGCTTTTTTGGCCTAAAGGTCTTGCCCTTTTGG
AAGAACTCTAAAAATCCATTTAAAGCCATGTCGACTGATAACT

BS11410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4946-PA 663 CG4946-RA 1..663 679..17 3290 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-RA 912 CG4946-RA 185..850 679..14 3315 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10265619..10265771 639..487 765 100 Minus
2L 23513712 2L 10266379..10266508 143..14 650 100 Minus
2L 23513712 2L 10265826..10265950 487..363 625 100 Minus
2L 23513712 2L 10266197..10266314 259..142 590 100 Minus
2L 23513712 2L 10266007..10266110 362..259 520 100 Minus
2L 23513712 2L 10265520..10265561 679..638 195 97.6 Minus
Blast to na_te.dros performed on 2015-01-31 12:11:15 has no hits.

BS11410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:12 Download gff for BS11410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4946-PA 1..663 17..679 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:26 Download gff for BS11410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4946-PA 1..663 17..679 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:01 Download gff for BS11410.3prime
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..850 14..679 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:21 Download gff for BS11410.3prime
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..850 14..679 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:21 Download gff for BS11410.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10265520..10265561 638..679 97 -> Minus
2L 10265621..10265771 487..637 100 -> Minus
2L 10265827..10265950 363..486 100 -> Minus
2L 10266007..10266110 259..362 100 -> Minus
2L 10266198..10266313 143..258 100 -> Minus
2L 10266380..10266508 14..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:01 Download gff for BS11410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10265520..10265561 638..679 97 -> Minus
arm_2L 10265621..10265771 487..637 100 -> Minus
arm_2L 10265827..10265950 363..486 100 -> Minus
arm_2L 10266007..10266110 259..362 100 -> Minus
arm_2L 10266198..10266313 143..258 100 -> Minus
arm_2L 10266380..10266508 14..142 100   Minus

BS11410.5prime Sequence

693 bp (692 high quality bases) assembled on 2006-05-08

> BS11410.5prime
GAAGTTATCAGTCGACATGGCTTTAAATGGATTTTTAGAGTTCTTCCAAA
AGGGCAAGACCTTTAGGCCAAAAAAGCCATTTGCCTCCGGAACCATTAGG
TATTCCTTACATAAGCAAGCCCAGGCCAGTTTGCAATCCGGGATTAATCT
GCGGCAAGTGGTGCGTTTGCCGCAAGGGGAGAATCTCAACGACTGGCTAG
CTGTGCACGTTGTGGACTTCTTCAATCGCATAAACTTGATCTACGGCACC
GTTTCGGAGTTTTGCAACGAAACTACGTGTCCCACGATGTCTGGCGGTTC
CAGATATGAGTACTTATGGGCCGATGGAGATCTATACAAAAAGCCAACCG
CCCTTTCAGCCCAAAAGTACATTGAGCATTTAATGGACTGGATTGAGACA
CAAATTAACAACGAAGCTGTTTTTCCAGTGTCCACGGATGTTCCATTTCC
CAAGAACTTCATAGCAATAAGTCGTAAAATTTTAACCCGTCTTTTTCGTG
TTTTCGTCCACGTCTATATTCACCATTTCGATCGGATTGTGAGCATTGGA
GCGGAAGCTCACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCA
AGAATTTGACATGATTTCGGCCAAGGAATTGGAACCCCTACAAGAAATGA
CATCTCGAATTTGCAAGGATAAGGATTGAAAGCTTTCTAGACC

BS11410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4946-PA 663 CG4946-RA 1..663 17..679 3290 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-RA 912 CG4946-RA 185..850 17..682 3315 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10265619..10265771 57..209 765 100 Plus
2L 23513712 2L 10266379..10266508 553..682 650 100 Plus
2L 23513712 2L 10265826..10265950 209..333 625 100 Plus
2L 23513712 2L 10266197..10266314 437..554 590 100 Plus
2L 23513712 2L 10266007..10266110 334..437 520 100 Plus
2L 23513712 2L 10265520..10265561 17..58 195 97.6 Plus
Blast to na_te.dros performed on 2015-02-12 04:19:53 has no hits.

BS11410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:13 Download gff for BS11410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4946-PA 1..663 17..679 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:27 Download gff for BS11410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4946-PA 1..663 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:43 Download gff for BS11410.5prime
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..850 17..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:31 Download gff for BS11410.5prime
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..850 17..682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:31 Download gff for BS11410.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10265520..10265561 17..58 97 -> Plus
2L 10265621..10265771 59..209 100 -> Plus
2L 10265827..10265950 210..333 100 -> Plus
2L 10266007..10266110 334..437 100 -> Plus
2L 10266198..10266313 438..553 100 -> Plus
2L 10266380..10266508 554..682 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:43 Download gff for BS11410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10265827..10265950 210..333 100 -> Plus
arm_2L 10266007..10266110 334..437 100 -> Plus
arm_2L 10266198..10266313 438..553 100 -> Plus
arm_2L 10266380..10266508 554..682 100   Plus
arm_2L 10265621..10265771 59..209 100 -> Plus
arm_2L 10265520..10265561 17..58 97 -> Plus

BS11410.complete Sequence

695 bp assembled on 2006-11-01

GenBank Submission: FJ636857

> BS11410.complete
GAAGTTATCAGTCGACATGGCTTTAAATGGATTTTTAGAGTTCTTCCAAA
AGGGCAAGACCTTTAGGCCAAAAAAGCCATTTGCCTCCGGAACCATTAGG
TATTCCTTACATAAGCAAGCCCAGGCCAGTTTGCAATCCGGGATTAATCT
GCGGCAAGTGGTGCGTTTGCCGCAAGGGGAGAATCTCAACGACTGGCTAG
CTGTGCACGTTGTGGACTTCTTCAATCGCATAAACTTGATCTACGGCACC
GTTTCGGAGTTTTGCAACGAAACTACGTGTCCCACGATGTCTGGCGGTTC
CAGATATGAGTACTTATGGGCCGATGGAGATCTATACAAAAAGCCAACCG
CCCTTTCAGCCCAAAAGTACATTGAGCATTTAATGGACTGGATTGAGACA
CAAATTAACAACGAAGCTGTTTTTCCAGTGTCCACGGATGTTCCATTTCC
CAAGAACTTCATAGCAATAAGTCGTAAAATTTTAACCCGTCTTTTTCGTG
TTTTCGTCCACGTCTATATTCACCATTTCGATCGGATTGTGAGCATTGGA
GCGGAAGCTCACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCA
AGAATTTGACATGATTTCGGCCAAGGAATTGGAACCCCTACAAGAAATGA
CATCTCGAATTTGCAAGGATAAGGATTGAAAGCTTTCTAGACCAT

BS11410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-RA 663 CG4946-PA 1..663 17..679 3300 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-RA 912 CG4946-RA 185..850 17..682 3315 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10265619..10265771 57..209 765 100 Plus
2L 23513712 2L 10266379..10266508 553..682 650 100 Plus
2L 23513712 2L 10265826..10265950 209..333 625 100 Plus
2L 23513712 2L 10266197..10266314 437..554 590 100 Plus
2L 23513712 2L 10266007..10266110 334..437 520 100 Plus
2L 23513712 2L 10265520..10265561 17..58 195 97.6 Plus
Blast to na_te.dros performed on 2014-11-27 14:48:10 has no hits.

BS11410.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:08 Download gff for BS11410.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 1..663 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:18 Download gff for BS11410.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 183..848 17..682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:08 Download gff for BS11410.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..846 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:08 Download gff for BS11410.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 183..848 17..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:55 Download gff for BS11410.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..846 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:55 Download gff for BS11410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10265520..10265561 17..58 97 -> Plus
2L 10265621..10265771 59..209 100 -> Plus
2L 10265827..10265950 210..333 100 -> Plus
2L 10266007..10266110 334..437 100 -> Plus
2L 10266198..10266313 438..553 100 -> Plus
2L 10266380..10266504 554..678 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:08 Download gff for BS11410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10265520..10265561 17..58 97 -> Plus
arm_2L 10265621..10265771 59..209 100 -> Plus
arm_2L 10265827..10265950 210..333 100 -> Plus
arm_2L 10266007..10266110 334..437 100 -> Plus
arm_2L 10266198..10266313 438..553 100 -> Plus
arm_2L 10266380..10266504 554..678 100   Plus

BS11410.pep Sequence

Translation from 16 to 678

> BS11410.pep
MALNGFLEFFQKGKTFRPKKPFASGTIRYSLHKQAQASLQSGINLRQVVR
LPQGENLNDWLAVHVVDFFNRINLIYGTVSEFCNETTCPTMSGGSRYEYL
WADGDLYKKPTALSAQKYIEHLMDWIETQINNEAVFPVSTDVPFPKNFIA
ISRKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKHFYYFVQEFDMI
SAKELEPLQEMTSRICKDKD*

BS11410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-PA 220 CG4946-PA 1..220 1..220 1170 100 Plus
mats-PC 219 CG13852-PC 3..211 6..215 612 52.9 Plus
mats-PB 219 CG13852-PB 3..211 6..215 612 52.9 Plus
mats-PA 219 CG13852-PA 3..211 6..215 612 52.9 Plus
Mob2-PC 431 CG11711-PC 35..200 44..211 322 35.7 Plus