Clone Sequence Records
BS11410.3prime Sequence
693 bp (692 high quality bases) assembled on 2006-05-08
> BS11410.3prime
ATGGTCTAGAAAGCTTTCAATCCTTATCCTTGCAAATTCGAGATGTCATT
TCTTGTAGGGGTTCCAATTCCTTGGCCGAAATCATGTCAAATTCTTGCAC
AAAGTAGTAAAAATGTTTGTAGCAGGCATTCACGTGAGCTTCCGCTCCAA
TGCTCACAATCCGATCGAAATGGTGAATATAGACGTGGACGAAAACACGA
AAAAGACGGGTTAAAATTTTACGACTTATTGCTATGAAGTTCTTGGGAAA
TGGAACATCCGTGGACACTGGAAAAACAGCTTCGTTGTTAATTTGTGTCT
CAATCCAGTCCATTAAATGCTCAATGTACTTTTGGGCTGAAAGGGCGGTT
GGCTTTTTGTATAGATCTCCATCGGCCCATAAGTACTCATATCTGGAACC
GCCAGACATCGTGGGACACGTAGTTTCGTTGCAAAACTCCGAAACGGTGC
CGTAGATCAAGTTTATGCGATTGAAGAAGTCCACAACGTGCACAGCTAGC
CAGTCGTTGAGATTCTCCCCTTGCGGCAAACGCACCACTTGCCGCAGATT
AATCCCGGATTGCAAACTGGCCTGGGCTTGCTTATGTAAGGAATACCTAA
TGGTTCCGGAGGCAAATGGCTTTTTTGGCCTAAAGGTCTTGCCCTTTTGG
AAGAACTCTAAAAATCCATTTAAAGCCATGTCGACTGATAACT
BS11410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4946-PA | 663 | CG4946-RA | 1..663 | 679..17 | 3290 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-RA | 912 | CG4946-RA | 185..850 | 679..14 | 3315 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10265619..10265771 | 639..487 | 765 | 100 | Minus |
2L | 23513712 | 2L | 10266379..10266508 | 143..14 | 650 | 100 | Minus |
2L | 23513712 | 2L | 10265826..10265950 | 487..363 | 625 | 100 | Minus |
2L | 23513712 | 2L | 10266197..10266314 | 259..142 | 590 | 100 | Minus |
2L | 23513712 | 2L | 10266007..10266110 | 362..259 | 520 | 100 | Minus |
2L | 23513712 | 2L | 10265520..10265561 | 679..638 | 195 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:11:15 has no hits.
BS11410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:12 Download gff for
BS11410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4946-PA | 1..663 | 17..679 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:26 Download gff for
BS11410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4946-PA | 1..663 | 17..679 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:01 Download gff for
BS11410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..850 | 14..679 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:21 Download gff for
BS11410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..850 | 14..679 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:21 Download gff for
BS11410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10265520..10265561 | 638..679 | 97 | -> | Minus |
2L | 10265621..10265771 | 487..637 | 100 | -> | Minus |
2L | 10265827..10265950 | 363..486 | 100 | -> | Minus |
2L | 10266007..10266110 | 259..362 | 100 | -> | Minus |
2L | 10266198..10266313 | 143..258 | 100 | -> | Minus |
2L | 10266380..10266508 | 14..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:01 Download gff for
BS11410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10265520..10265561 | 638..679 | 97 | -> | Minus |
arm_2L | 10265621..10265771 | 487..637 | 100 | -> | Minus |
arm_2L | 10265827..10265950 | 363..486 | 100 | -> | Minus |
arm_2L | 10266007..10266110 | 259..362 | 100 | -> | Minus |
arm_2L | 10266198..10266313 | 143..258 | 100 | -> | Minus |
arm_2L | 10266380..10266508 | 14..142 | 100 | | Minus |
BS11410.5prime Sequence
693 bp (692 high quality bases) assembled on 2006-05-08
> BS11410.5prime
GAAGTTATCAGTCGACATGGCTTTAAATGGATTTTTAGAGTTCTTCCAAA
AGGGCAAGACCTTTAGGCCAAAAAAGCCATTTGCCTCCGGAACCATTAGG
TATTCCTTACATAAGCAAGCCCAGGCCAGTTTGCAATCCGGGATTAATCT
GCGGCAAGTGGTGCGTTTGCCGCAAGGGGAGAATCTCAACGACTGGCTAG
CTGTGCACGTTGTGGACTTCTTCAATCGCATAAACTTGATCTACGGCACC
GTTTCGGAGTTTTGCAACGAAACTACGTGTCCCACGATGTCTGGCGGTTC
CAGATATGAGTACTTATGGGCCGATGGAGATCTATACAAAAAGCCAACCG
CCCTTTCAGCCCAAAAGTACATTGAGCATTTAATGGACTGGATTGAGACA
CAAATTAACAACGAAGCTGTTTTTCCAGTGTCCACGGATGTTCCATTTCC
CAAGAACTTCATAGCAATAAGTCGTAAAATTTTAACCCGTCTTTTTCGTG
TTTTCGTCCACGTCTATATTCACCATTTCGATCGGATTGTGAGCATTGGA
GCGGAAGCTCACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCA
AGAATTTGACATGATTTCGGCCAAGGAATTGGAACCCCTACAAGAAATGA
CATCTCGAATTTGCAAGGATAAGGATTGAAAGCTTTCTAGACC
BS11410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4946-PA | 663 | CG4946-RA | 1..663 | 17..679 | 3290 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-RA | 912 | CG4946-RA | 185..850 | 17..682 | 3315 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10265619..10265771 | 57..209 | 765 | 100 | Plus |
2L | 23513712 | 2L | 10266379..10266508 | 553..682 | 650 | 100 | Plus |
2L | 23513712 | 2L | 10265826..10265950 | 209..333 | 625 | 100 | Plus |
2L | 23513712 | 2L | 10266197..10266314 | 437..554 | 590 | 100 | Plus |
2L | 23513712 | 2L | 10266007..10266110 | 334..437 | 520 | 100 | Plus |
2L | 23513712 | 2L | 10265520..10265561 | 17..58 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:19:53 has no hits.
BS11410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:13 Download gff for
BS11410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4946-PA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:27 Download gff for
BS11410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4946-PA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:43 Download gff for
BS11410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..850 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:31 Download gff for
BS11410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..850 | 17..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:31 Download gff for
BS11410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10265520..10265561 | 17..58 | 97 | -> | Plus |
2L | 10265621..10265771 | 59..209 | 100 | -> | Plus |
2L | 10265827..10265950 | 210..333 | 100 | -> | Plus |
2L | 10266007..10266110 | 334..437 | 100 | -> | Plus |
2L | 10266198..10266313 | 438..553 | 100 | -> | Plus |
2L | 10266380..10266508 | 554..682 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:43 Download gff for
BS11410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10265827..10265950 | 210..333 | 100 | -> | Plus |
arm_2L | 10266007..10266110 | 334..437 | 100 | -> | Plus |
arm_2L | 10266198..10266313 | 438..553 | 100 | -> | Plus |
arm_2L | 10266380..10266508 | 554..682 | 100 | | Plus |
arm_2L | 10265621..10265771 | 59..209 | 100 | -> | Plus |
arm_2L | 10265520..10265561 | 17..58 | 97 | -> | Plus |
BS11410.complete Sequence
695 bp assembled on 2006-11-01
GenBank Submission: FJ636857
> BS11410.complete
GAAGTTATCAGTCGACATGGCTTTAAATGGATTTTTAGAGTTCTTCCAAA
AGGGCAAGACCTTTAGGCCAAAAAAGCCATTTGCCTCCGGAACCATTAGG
TATTCCTTACATAAGCAAGCCCAGGCCAGTTTGCAATCCGGGATTAATCT
GCGGCAAGTGGTGCGTTTGCCGCAAGGGGAGAATCTCAACGACTGGCTAG
CTGTGCACGTTGTGGACTTCTTCAATCGCATAAACTTGATCTACGGCACC
GTTTCGGAGTTTTGCAACGAAACTACGTGTCCCACGATGTCTGGCGGTTC
CAGATATGAGTACTTATGGGCCGATGGAGATCTATACAAAAAGCCAACCG
CCCTTTCAGCCCAAAAGTACATTGAGCATTTAATGGACTGGATTGAGACA
CAAATTAACAACGAAGCTGTTTTTCCAGTGTCCACGGATGTTCCATTTCC
CAAGAACTTCATAGCAATAAGTCGTAAAATTTTAACCCGTCTTTTTCGTG
TTTTCGTCCACGTCTATATTCACCATTTCGATCGGATTGTGAGCATTGGA
GCGGAAGCTCACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCA
AGAATTTGACATGATTTCGGCCAAGGAATTGGAACCCCTACAAGAAATGA
CATCTCGAATTTGCAAGGATAAGGATTGAAAGCTTTCTAGACCAT
BS11410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-RA | 663 | CG4946-PA | 1..663 | 17..679 | 3300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-RA | 912 | CG4946-RA | 185..850 | 17..682 | 3315 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10265619..10265771 | 57..209 | 765 | 100 | Plus |
2L | 23513712 | 2L | 10266379..10266508 | 553..682 | 650 | 100 | Plus |
2L | 23513712 | 2L | 10265826..10265950 | 209..333 | 625 | 100 | Plus |
2L | 23513712 | 2L | 10266197..10266314 | 437..554 | 590 | 100 | Plus |
2L | 23513712 | 2L | 10266007..10266110 | 334..437 | 520 | 100 | Plus |
2L | 23513712 | 2L | 10265520..10265561 | 17..58 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:48:10 has no hits.
BS11410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:08 Download gff for
BS11410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:18 Download gff for
BS11410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 183..848 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:08 Download gff for
BS11410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..846 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:08 Download gff for
BS11410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 183..848 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:55 Download gff for
BS11410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..846 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:55 Download gff for
BS11410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10265520..10265561 | 17..58 | 97 | -> | Plus |
2L | 10265621..10265771 | 59..209 | 100 | -> | Plus |
2L | 10265827..10265950 | 210..333 | 100 | -> | Plus |
2L | 10266007..10266110 | 334..437 | 100 | -> | Plus |
2L | 10266198..10266313 | 438..553 | 100 | -> | Plus |
2L | 10266380..10266504 | 554..678 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:08 Download gff for
BS11410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10265520..10265561 | 17..58 | 97 | -> | Plus |
arm_2L | 10265621..10265771 | 59..209 | 100 | -> | Plus |
arm_2L | 10265827..10265950 | 210..333 | 100 | -> | Plus |
arm_2L | 10266007..10266110 | 334..437 | 100 | -> | Plus |
arm_2L | 10266198..10266313 | 438..553 | 100 | -> | Plus |
arm_2L | 10266380..10266504 | 554..678 | 100 | | Plus |
BS11410.pep Sequence
Translation from 16 to 678
> BS11410.pep
MALNGFLEFFQKGKTFRPKKPFASGTIRYSLHKQAQASLQSGINLRQVVR
LPQGENLNDWLAVHVVDFFNRINLIYGTVSEFCNETTCPTMSGGSRYEYL
WADGDLYKKPTALSAQKYIEHLMDWIETQINNEAVFPVSTDVPFPKNFIA
ISRKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKHFYYFVQEFDMI
SAKELEPLQEMTSRICKDKD*
BS11410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-PA | 220 | CG4946-PA | 1..220 | 1..220 | 1170 | 100 | Plus |
mats-PC | 219 | CG13852-PC | 3..211 | 6..215 | 612 | 52.9 | Plus |
mats-PB | 219 | CG13852-PB | 3..211 | 6..215 | 612 | 52.9 | Plus |
mats-PA | 219 | CG13852-PA | 3..211 | 6..215 | 612 | 52.9 | Plus |
Mob2-PC | 431 | CG11711-PC | 35..200 | 44..211 | 322 | 35.7 | Plus |