Clone Sequence Records
BS11415.3prime Sequence
873 bp (794 high quality bases) assembled on 2006-05-08
> BS11415.3prime
ATGGTCTAGAAAGCTTTTAGAAGTCCGTTTCTGGGCTCTGTGGCCTCGGA
CTCTCAGGTTGCGGTTGATGGTTTGGATGAAGGTCTCTGGTTATCGGAAG
CACAGCTTGGACCTGCGGTTGGGTGACCACCACATCGTCGGTGTCTACAG
TGTCTAGACCCCTGTCCGCCTCCTGTTTGGGAGGATTGAAGGACTTCAGG
TTGCCCAACTGGCTGCGAACGTCCGACTCGGAGAGCAGATGCAATGGTAC
GTTCGCTGGGACGGCCAACCGCTTGGGACTGGTGCTACCATCATCTGGCT
TACGTCTGTCTGGTGGAAAGACCACTTGTGCATAGGTGACCCCACTCTCA
CTGGGCTCCACAATGCTCTGTGCTCCACCCGATGAAGTAGTCACCGAACT
GGGATTCCTGAATACCGCTGTCTCTGTCCGTGGTTCTGGAGCGGCATCTC
TGCGTTGAATGGGCGATGAGGTGGTGGTGGTGGTTACTGGACTTCCTCCA
CGTGGAGCACTGGGCGACGTTGTCGCATCCTCATGCGGAATTGGTGCGTA
CAGAGAGGGTGTGTAATTATTGTCCGTCACCTTGCAGTTGTAAAGATTGA
GTCCTTTGGCGAATATGTATACGAGTATGTCGAAAAGCACACTGGCCAGG
ATCAATGAGGCTGTGAGAATATCGAGGATGTTGCCATGCTTCGGCGTTTC
TCGCAGCAGACAGCGCTCGTAGTTGGGTGCCCAGTAAACGCAGGTTGTAC
GGGTGACAATGTCGTAGCTGAGATGCACTGGAACATAGGCGAAAAGGCCC
ACGATCATTAGTTCAAAGGCCAGGGCCAATGACTTATCCTGTGGCAGGAC
AGCTCGCAATGTGATCAACGTCT
BS11415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6417-PA | 2445 | Oatp33Eb-RA | 1589..2445 | 873..17 | 4260 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-RA | 2743 | CG6417-RA | 1767..2626 | 873..14 | 4285 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12451194..12451930 | 750..14 | 3685 | 100 | Minus |
2L | 23513712 | 2L | 12451007..12451131 | 873..749 | 610 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:44:17 has no hits.
BS11415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:21 Download gff for
BS11415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6417-PA | 1589..2445 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:37 Download gff for
BS11415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6417-PA | 1589..2445 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:50:20 Download gff for
BS11415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 1767..2631 | 9..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:23 Download gff for
BS11415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 1767..2631 | 9..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:23 Download gff for
BS11415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12451007..12451129 | 751..873 | 99 | -> | Minus |
2L | 12451194..12451935 | 9..750 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:50:20 Download gff for
BS11415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12451007..12451129 | 751..873 | 99 | -> | Minus |
arm_2L | 12451194..12451935 | 9..750 | 99 | | Minus |
BS11415.5prime Sequence
844 bp (818 high quality bases) assembled on 2006-05-08
> BS11415.5prime
GAAGTTATCAGTCGACATGGCGCATAATACGCGCAACTCCGATTTATCGC
AGATAGCTGTCAATGCCAACAATATACCCGATGACAGCGTCGATTGTGGC
ATCAAGGGTCTGGGATGGTGTCGCGGTCCCGGATGCCAGAAATATGCCCG
ACTGCGCACCTTCATCCTGGTACTGGCCATCTCGGGAACCCTACAGGGCG
CCTGCGAATCCTACTTCCGCGTGTCGGCCAAACAGGCTTCCTTTCAGTTC
GGTTGGAATCCACTGATTGTGGATTGGCTGCTGGTGGCCAGTGGATTATT
CCAGGCGGTCTTTGCGTTGGCTTTCGCCTACTGGGCGGACGTCTATCATC
CCATCAAATGGCTGGTGGGAACTCTGATGCTGCAGGCGGTCACCTGTGTG
GTGGCTGTGATTCCCTCCATTATGAACTTTGCCGATGGCAACCAGGCAAA
GGATGCTCTGCTGGATGCCAATATGTGCGCCACATCCTTGGCACAGTTCC
AAAGGCTCACACTGACCGAGGCCCAGAGCAGCAGCCTAACCCTTGCGATG
CTCTTCGTTCTTCAGCTGGCCTTGGGAATGGGAGGATTGGCCTACTACAC
GCTGGGGGTTAGCTACATCGACGACAACTCCCTGTCCCAAGATAGTCCGG
CGGTGATAGGTGCTGCTCTGGCTGCGCGCGTATTTGGCCAGCAGGCTGGA
TCCTTCCTAGTGCTTGGCGTTGGTCTCACCCATGTGGGTTGGTGGCTCGG
TTGGGTGATACTGGCACCCTTCATTTTCGTGGGCGCTGTGCTCCTGGGAC
TGTTTCCCAAACGACTGCCAAAGACCGTCATTCACCAGGCGGCG
BS11415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6417-PA | 2445 | Oatp33Eb-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-RA | 2743 | CG6417-RA | 179..1006 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12449832..12450246 | 430..844 | 2075 | 100 | Plus |
2L | 23513712 | 2L | 12448806..12448995 | 83..272 | 950 | 100 | Plus |
2L | 23513712 | 2L | 12449596..12449753 | 272..429 | 790 | 100 | Plus |
2L | 23513712 | 2L | 12448662..12448728 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:45:16 has no hits.
BS11415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:22 Download gff for
BS11415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6417-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:38 Download gff for
BS11415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6417-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:34 Download gff for
BS11415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 179..1006 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:12 Download gff for
BS11415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 179..1006 | 17..844 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:12 Download gff for
BS11415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12448662..12448728 | 17..83 | 100 | -> | Plus |
2L | 12448807..12448995 | 84..272 | 100 | -> | Plus |
2L | 12449597..12449753 | 273..429 | 100 | -> | Plus |
2L | 12449832..12450246 | 430..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:34 Download gff for
BS11415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12449597..12449753 | 273..429 | 100 | -> | Plus |
arm_2L | 12448662..12448728 | 17..83 | 100 | -> | Plus |
arm_2L | 12448807..12448995 | 84..272 | 100 | -> | Plus |
arm_2L | 12449832..12450246 | 430..844 | 100 | | Plus |
BS11415.complete Sequence
2477 bp assembled on 2009-12-07
GenBank Submission: KX803530
> BS11415.complete
GAAGTTATCAGTCGACATGGCGCATAATACGCGCAACTCCGATTTATCGC
AGATAGCTGTCAATGCCAACAATATACCCGATGACAGCGTCGATTGTGGC
ATCAAGGGTCTGGGATGGTGTCGCGGTCCCGGATGCCAGAAATATGCCCG
ACTGCGCACCTTCATCCTGGTACTGGCCATCTCGGGAACCCTACAGGGCG
CCTGCGAATCCTACTTCCGCGTGTCGGCCAAACAGGCTTCCTTTCAGTTC
GGTTGGAATCCACTGATTGTGGATTGGCTGCTGGTGGCCAGTGGATTATT
CCAGGCGGTCTTTGCGTTGGCTTTCGCCTACTGGGCGGACGTCTATCATC
CCATCAAATGGCTGGTGGGAACTCTGATGCTGCAGGCGGTCACCTGTGTG
GTGGCTGTGATTCCCTCCATTATGAACTTTGCCGATGGCAACCAGGCAAA
GGATGCTCTGCTGGATGCCAATATGTGCGCCACATCCTTGGCACAGTTCC
AAAGGCTCACACTGACCGAGGCCCAGAGCAGCAGCCTAACCCTTGCGATG
CTCTTCGTTCTTCAGCTGGCCTTGGGAATGGGAGGATTGGCCTACTACAC
GCTGGGGGTTAGCTACATCGACGACAACTCCCTGTCCCAAGATAGTCCGG
CGGTGATAGGTGCTGCTCTGGCTGCGCGCGTATTTGGCCAGCAGGCTGGA
TCCTTCCTAGTGCTTGGCGTTGGTCTCACCCATGTGGGTTGGTGGCTCGG
TTGGGTGATACTGGCACCCTTCATTTTCGTGGGCGCTGTGCTCCTGGGAC
TGTTTCCCAAACGACTGCCAAAGACCGTCATTCACCAGGCGGCGCAACGG
ATCATTGAGCAGTCCAGCATGCGTAGGTTTGGCAGCCAGTTCTCAACATA
TATGGATGACTCCGATTTTTGGCCATCTCTGAAGAGGCTATTCAATAACC
GCCTACTGATGTTCAATCTGTTGAGCATCATGTGCGTGCAGAGTGCAGTC
GTGAACTATGGCCTCCAGGAGGAGAGCTATCTGCAGAGCAGATTCTTTTT
GCCCTACAACGAACAGGATGGCTTGGCGGCAGAGTGGAGATCGGCATTCG
TTTCCTATTTCCTCAAGCCGCCAGTTATGGCATTGGGAATGCTGATAAGT
GGCCTGGTCATCTCGAAGGCCAAGTTATCTGCTCGTAAAATCACCGGTAT
AAACATAGCCCTCAGTATACATCTGGTAGCGATTTTCATCGGCCTGATCT
TTGTCCAGTGCGATGTGGGCGCCATTGCTGGTGTGGAGGGTGGTAAGCTA
AAACAGCCCTATTGCTCCAGTCAGTGCCTATGCACACCCACTGCCTTCAT
GCCCGTGTGTCCGGAAAACAGTTCCGTCACCTACTTCTCGCCCTGCTACG
CGGGTTGCACCAAAAAGACCACCATCAATAGCTTTCAGTTGTTCGAGGGC
TGCAGCTGCAGCGGGGATCAGTCCTTGAATTCCACTGGTCAGATGAGGGC
AACCGCTGGAGCTTGCAGCTCCGACAATTGCCAGAGTGCCATCATCATCT
TCCAGATCATGAGCATTTCGGTGGCATTTCTAATGGGCGTCGGAGCCATA
GGAAAGACGTTGATCACACTGCGAGCTGTCCTGCCACAGGATAAGTCATT
GGCCCTGGCCTTTGAACTAATGATCGTGGGCCTTTTCGCCTATGTTCCAG
TGCATCTCAGCTACGACATTGTCACCCGTACAACCTGCGTTTACTGGGCA
CCCAACTACGAGCGCTGTCTGCTGCGAGAAACGCCGAAGCATGGCAACAT
CCTCGATATTCTCACAGCCTCATTGATCCTGGCCAGTGTGCTTTTCGACA
TACTCGTATACATATTCGCCAAAGGACTCAATCTTTACAACTGCAAGGTG
ACGGACAATAATTACACACCCTCTCTGTACGCACCAATTCCGCATGAGGA
TGCGACAACGTCGCCCAGTGCTCCACGTGGAGGAAGTCCAGTAACCACCA
CCACCACCTCATCGCCCATTCAACGCAGAGATGCCGCTCCAGAACCACGG
ACAGAGACAGCGGTATTCAGGAATCCCAGTTCGGTGACTACTTCATCGGG
TGGAGCACAGAGCATTGTGGAGCCCAGTGAGAGTGGGGTCACCTATGCAC
AAGTGGTCTTTCCACCAGACAGACGTAAGCCAGATGATGGTAGCACCAGT
CCCAAGCGGTTGGCCGTCCCAGCGAACGTACCATTGCATCTGCTCTCCGA
GTCGGACGTTCGCAGCCAGTTGGGCAACCTGAAGTCCTTCAATCCTCCCA
AACAGGAGGCGGACAGGGGTCTAGACACTGTAGACACCGACGATGTGGTG
GTCACCCAACCGCAGGTCCAAGCTGTGCTTCCGATAACCAGAGACCTTCA
TCCAAACCATCAACCGCAACCTGAGAGTCCGAGGCCACAGAGCCCAGAAA
CGGACTTCTAAAAGCTTTCTAGACCAT
BS11415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-RA | 2445 | CG6417-PA | 1..2445 | 17..2461 | 12225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-RA | 2743 | CG6417-RA | 179..2626 | 17..2464 | 12240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12449832..12451131 | 430..1729 | 6500 | 100 | Plus |
2L | 23513712 | 2L | 12451194..12451930 | 1728..2464 | 3685 | 100 | Plus |
2L | 23513712 | 2L | 12448806..12448995 | 83..272 | 950 | 100 | Plus |
2L | 23513712 | 2L | 12449596..12449753 | 272..429 | 790 | 100 | Plus |
2L | 23513712 | 2L | 12448662..12448728 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:14:17 has no hits.
BS11415.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:56 Download gff for
BS11415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 177..2619 | 17..2459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:25 Download gff for
BS11415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 179..2621 | 17..2459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:04 Download gff for
BS11415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 177..2619 | 17..2459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:53 Download gff for
BS11415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 179..2621 | 17..2459 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:53 Download gff for
BS11415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12448662..12448728 | 17..83 | 100 | -> | Plus |
2L | 12448807..12448995 | 84..272 | 100 | -> | Plus |
2L | 12449597..12449753 | 273..429 | 100 | -> | Plus |
2L | 12449832..12451129 | 430..1727 | 100 | -> | Plus |
2L | 12451194..12451925 | 1728..2459 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:25 Download gff for
BS11415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12448662..12448728 | 17..83 | 100 | -> | Plus |
arm_2L | 12448807..12448995 | 84..272 | 100 | -> | Plus |
arm_2L | 12449597..12449753 | 273..429 | 100 | -> | Plus |
arm_2L | 12449832..12451129 | 430..1727 | 100 | -> | Plus |
arm_2L | 12451194..12451925 | 1728..2459 | 100 | | Plus |
BS11415.pep Sequence
Translation from 16 to 2460
> BS11415.pep
MAHNTRNSDLSQIAVNANNIPDDSVDCGIKGLGWCRGPGCQKYARLRTFI
LVLAISGTLQGACESYFRVSAKQASFQFGWNPLIVDWLLVASGLFQAVFA
LAFAYWADVYHPIKWLVGTLMLQAVTCVVAVIPSIMNFADGNQAKDALLD
ANMCATSLAQFQRLTLTEAQSSSLTLAMLFVLQLALGMGGLAYYTLGVSY
IDDNSLSQDSPAVIGAALAARVFGQQAGSFLVLGVGLTHVGWWLGWVILA
PFIFVGAVLLGLFPKRLPKTVIHQAAQRIIEQSSMRRFGSQFSTYMDDSD
FWPSLKRLFNNRLLMFNLLSIMCVQSAVVNYGLQEESYLQSRFFLPYNEQ
DGLAAEWRSAFVSYFLKPPVMALGMLISGLVISKAKLSARKITGINIALS
IHLVAIFIGLIFVQCDVGAIAGVEGGKLKQPYCSSQCLCTPTAFMPVCPE
NSSVTYFSPCYAGCTKKTTINSFQLFEGCSCSGDQSLNSTGQMRATAGAC
SSDNCQSAIIIFQIMSISVAFLMGVGAIGKTLITLRAVLPQDKSLALAFE
LMIVGLFAYVPVHLSYDIVTRTTCVYWAPNYERCLLRETPKHGNILDILT
ASLILASVLFDILVYIFAKGLNLYNCKVTDNNYTPSLYAPIPHEDATTSP
SAPRGGSPVTTTTTSSPIQRRDAAPEPRTETAVFRNPSSVTTSSGGAQSI
VEPSESGVTYAQVVFPPDRRKPDDGSTSPKRLAVPANVPLHLLSESDVRS
QLGNLKSFNPPKQEADRGLDTVDTDDVVVTQPQVQAVLPITRDLHPNHQP
QPESPRPQSPETDF*
BS11415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-PA | 814 | CG6417-PA | 1..814 | 1..814 | 4214 | 100 | Plus |
Oatp58Db-PB | 680 | CG3382-PB | 36..652 | 31..625 | 511 | 25.1 | Plus |
Oatp58Dc-PC | 789 | CG3380-PC | 89..764 | 22..625 | 461 | 23.4 | Plus |
Oatp58Dc-PB | 789 | CG3380-PB | 89..764 | 22..625 | 461 | 23.4 | Plus |
Oatp58Dc-PA | 789 | CG3380-PA | 89..764 | 22..625 | 461 | 23.4 | Plus |