Clone BS11415 Report

Search the DGRC for BS11415

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptOatp33Eb-RA
Protein status:BS11415.pep: full length peptide match
Sequenced Size:2477

Clone Sequence Records

BS11415.3prime Sequence

873 bp (794 high quality bases) assembled on 2006-05-08

> BS11415.3prime
ATGGTCTAGAAAGCTTTTAGAAGTCCGTTTCTGGGCTCTGTGGCCTCGGA
CTCTCAGGTTGCGGTTGATGGTTTGGATGAAGGTCTCTGGTTATCGGAAG
CACAGCTTGGACCTGCGGTTGGGTGACCACCACATCGTCGGTGTCTACAG
TGTCTAGACCCCTGTCCGCCTCCTGTTTGGGAGGATTGAAGGACTTCAGG
TTGCCCAACTGGCTGCGAACGTCCGACTCGGAGAGCAGATGCAATGGTAC
GTTCGCTGGGACGGCCAACCGCTTGGGACTGGTGCTACCATCATCTGGCT
TACGTCTGTCTGGTGGAAAGACCACTTGTGCATAGGTGACCCCACTCTCA
CTGGGCTCCACAATGCTCTGTGCTCCACCCGATGAAGTAGTCACCGAACT
GGGATTCCTGAATACCGCTGTCTCTGTCCGTGGTTCTGGAGCGGCATCTC
TGCGTTGAATGGGCGATGAGGTGGTGGTGGTGGTTACTGGACTTCCTCCA
CGTGGAGCACTGGGCGACGTTGTCGCATCCTCATGCGGAATTGGTGCGTA
CAGAGAGGGTGTGTAATTATTGTCCGTCACCTTGCAGTTGTAAAGATTGA
GTCCTTTGGCGAATATGTATACGAGTATGTCGAAAAGCACACTGGCCAGG
ATCAATGAGGCTGTGAGAATATCGAGGATGTTGCCATGCTTCGGCGTTTC
TCGCAGCAGACAGCGCTCGTAGTTGGGTGCCCAGTAAACGCAGGTTGTAC
GGGTGACAATGTCGTAGCTGAGATGCACTGGAACATAGGCGAAAAGGCCC
ACGATCATTAGTTCAAAGGCCAGGGCCAATGACTTATCCTGTGGCAGGAC
AGCTCGCAATGTGATCAACGTCT

BS11415.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6417-PA 2445 Oatp33Eb-RA 1589..2445 873..17 4260 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp33Eb-RA 2743 CG6417-RA 1767..2626 873..14 4285 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12451194..12451930 750..14 3685 100 Minus
2L 23513712 2L 12451007..12451131 873..749 610 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 04:44:17 has no hits.

BS11415.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:21 Download gff for BS11415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6417-PA 1589..2445 17..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:37 Download gff for BS11415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6417-PA 1589..2445 17..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:50:20 Download gff for BS11415.3prime
Subject Subject Range Query Range Percent Splice Strand
Oatp33Eb-RA 1767..2631 9..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:23 Download gff for BS11415.3prime
Subject Subject Range Query Range Percent Splice Strand
Oatp33Eb-RA 1767..2631 9..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:23 Download gff for BS11415.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12451007..12451129 751..873 99 -> Minus
2L 12451194..12451935 9..750 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:50:20 Download gff for BS11415.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12451007..12451129 751..873 99 -> Minus
arm_2L 12451194..12451935 9..750 99   Minus

BS11415.5prime Sequence

844 bp (818 high quality bases) assembled on 2006-05-08

> BS11415.5prime
GAAGTTATCAGTCGACATGGCGCATAATACGCGCAACTCCGATTTATCGC
AGATAGCTGTCAATGCCAACAATATACCCGATGACAGCGTCGATTGTGGC
ATCAAGGGTCTGGGATGGTGTCGCGGTCCCGGATGCCAGAAATATGCCCG
ACTGCGCACCTTCATCCTGGTACTGGCCATCTCGGGAACCCTACAGGGCG
CCTGCGAATCCTACTTCCGCGTGTCGGCCAAACAGGCTTCCTTTCAGTTC
GGTTGGAATCCACTGATTGTGGATTGGCTGCTGGTGGCCAGTGGATTATT
CCAGGCGGTCTTTGCGTTGGCTTTCGCCTACTGGGCGGACGTCTATCATC
CCATCAAATGGCTGGTGGGAACTCTGATGCTGCAGGCGGTCACCTGTGTG
GTGGCTGTGATTCCCTCCATTATGAACTTTGCCGATGGCAACCAGGCAAA
GGATGCTCTGCTGGATGCCAATATGTGCGCCACATCCTTGGCACAGTTCC
AAAGGCTCACACTGACCGAGGCCCAGAGCAGCAGCCTAACCCTTGCGATG
CTCTTCGTTCTTCAGCTGGCCTTGGGAATGGGAGGATTGGCCTACTACAC
GCTGGGGGTTAGCTACATCGACGACAACTCCCTGTCCCAAGATAGTCCGG
CGGTGATAGGTGCTGCTCTGGCTGCGCGCGTATTTGGCCAGCAGGCTGGA
TCCTTCCTAGTGCTTGGCGTTGGTCTCACCCATGTGGGTTGGTGGCTCGG
TTGGGTGATACTGGCACCCTTCATTTTCGTGGGCGCTGTGCTCCTGGGAC
TGTTTCCCAAACGACTGCCAAAGACCGTCATTCACCAGGCGGCG

BS11415.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6417-PA 2445 Oatp33Eb-RA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp33Eb-RA 2743 CG6417-RA 179..1006 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12449832..12450246 430..844 2075 100 Plus
2L 23513712 2L 12448806..12448995 83..272 950 100 Plus
2L 23513712 2L 12449596..12449753 272..429 790 100 Plus
2L 23513712 2L 12448662..12448728 17..83 335 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:45:16 has no hits.

BS11415.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:22 Download gff for BS11415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6417-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:38 Download gff for BS11415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6417-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:34 Download gff for BS11415.5prime
Subject Subject Range Query Range Percent Splice Strand
Oatp33Eb-RA 179..1006 17..844 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:12 Download gff for BS11415.5prime
Subject Subject Range Query Range Percent Splice Strand
Oatp33Eb-RA 179..1006 17..844 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:12 Download gff for BS11415.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12448662..12448728 17..83 100 -> Plus
2L 12448807..12448995 84..272 100 -> Plus
2L 12449597..12449753 273..429 100 -> Plus
2L 12449832..12450246 430..844 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:34 Download gff for BS11415.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12449597..12449753 273..429 100 -> Plus
arm_2L 12448662..12448728 17..83 100 -> Plus
arm_2L 12448807..12448995 84..272 100 -> Plus
arm_2L 12449832..12450246 430..844 100   Plus

BS11415.complete Sequence

2477 bp assembled on 2009-12-07

GenBank Submission: KX803530

> BS11415.complete
GAAGTTATCAGTCGACATGGCGCATAATACGCGCAACTCCGATTTATCGC
AGATAGCTGTCAATGCCAACAATATACCCGATGACAGCGTCGATTGTGGC
ATCAAGGGTCTGGGATGGTGTCGCGGTCCCGGATGCCAGAAATATGCCCG
ACTGCGCACCTTCATCCTGGTACTGGCCATCTCGGGAACCCTACAGGGCG
CCTGCGAATCCTACTTCCGCGTGTCGGCCAAACAGGCTTCCTTTCAGTTC
GGTTGGAATCCACTGATTGTGGATTGGCTGCTGGTGGCCAGTGGATTATT
CCAGGCGGTCTTTGCGTTGGCTTTCGCCTACTGGGCGGACGTCTATCATC
CCATCAAATGGCTGGTGGGAACTCTGATGCTGCAGGCGGTCACCTGTGTG
GTGGCTGTGATTCCCTCCATTATGAACTTTGCCGATGGCAACCAGGCAAA
GGATGCTCTGCTGGATGCCAATATGTGCGCCACATCCTTGGCACAGTTCC
AAAGGCTCACACTGACCGAGGCCCAGAGCAGCAGCCTAACCCTTGCGATG
CTCTTCGTTCTTCAGCTGGCCTTGGGAATGGGAGGATTGGCCTACTACAC
GCTGGGGGTTAGCTACATCGACGACAACTCCCTGTCCCAAGATAGTCCGG
CGGTGATAGGTGCTGCTCTGGCTGCGCGCGTATTTGGCCAGCAGGCTGGA
TCCTTCCTAGTGCTTGGCGTTGGTCTCACCCATGTGGGTTGGTGGCTCGG
TTGGGTGATACTGGCACCCTTCATTTTCGTGGGCGCTGTGCTCCTGGGAC
TGTTTCCCAAACGACTGCCAAAGACCGTCATTCACCAGGCGGCGCAACGG
ATCATTGAGCAGTCCAGCATGCGTAGGTTTGGCAGCCAGTTCTCAACATA
TATGGATGACTCCGATTTTTGGCCATCTCTGAAGAGGCTATTCAATAACC
GCCTACTGATGTTCAATCTGTTGAGCATCATGTGCGTGCAGAGTGCAGTC
GTGAACTATGGCCTCCAGGAGGAGAGCTATCTGCAGAGCAGATTCTTTTT
GCCCTACAACGAACAGGATGGCTTGGCGGCAGAGTGGAGATCGGCATTCG
TTTCCTATTTCCTCAAGCCGCCAGTTATGGCATTGGGAATGCTGATAAGT
GGCCTGGTCATCTCGAAGGCCAAGTTATCTGCTCGTAAAATCACCGGTAT
AAACATAGCCCTCAGTATACATCTGGTAGCGATTTTCATCGGCCTGATCT
TTGTCCAGTGCGATGTGGGCGCCATTGCTGGTGTGGAGGGTGGTAAGCTA
AAACAGCCCTATTGCTCCAGTCAGTGCCTATGCACACCCACTGCCTTCAT
GCCCGTGTGTCCGGAAAACAGTTCCGTCACCTACTTCTCGCCCTGCTACG
CGGGTTGCACCAAAAAGACCACCATCAATAGCTTTCAGTTGTTCGAGGGC
TGCAGCTGCAGCGGGGATCAGTCCTTGAATTCCACTGGTCAGATGAGGGC
AACCGCTGGAGCTTGCAGCTCCGACAATTGCCAGAGTGCCATCATCATCT
TCCAGATCATGAGCATTTCGGTGGCATTTCTAATGGGCGTCGGAGCCATA
GGAAAGACGTTGATCACACTGCGAGCTGTCCTGCCACAGGATAAGTCATT
GGCCCTGGCCTTTGAACTAATGATCGTGGGCCTTTTCGCCTATGTTCCAG
TGCATCTCAGCTACGACATTGTCACCCGTACAACCTGCGTTTACTGGGCA
CCCAACTACGAGCGCTGTCTGCTGCGAGAAACGCCGAAGCATGGCAACAT
CCTCGATATTCTCACAGCCTCATTGATCCTGGCCAGTGTGCTTTTCGACA
TACTCGTATACATATTCGCCAAAGGACTCAATCTTTACAACTGCAAGGTG
ACGGACAATAATTACACACCCTCTCTGTACGCACCAATTCCGCATGAGGA
TGCGACAACGTCGCCCAGTGCTCCACGTGGAGGAAGTCCAGTAACCACCA
CCACCACCTCATCGCCCATTCAACGCAGAGATGCCGCTCCAGAACCACGG
ACAGAGACAGCGGTATTCAGGAATCCCAGTTCGGTGACTACTTCATCGGG
TGGAGCACAGAGCATTGTGGAGCCCAGTGAGAGTGGGGTCACCTATGCAC
AAGTGGTCTTTCCACCAGACAGACGTAAGCCAGATGATGGTAGCACCAGT
CCCAAGCGGTTGGCCGTCCCAGCGAACGTACCATTGCATCTGCTCTCCGA
GTCGGACGTTCGCAGCCAGTTGGGCAACCTGAAGTCCTTCAATCCTCCCA
AACAGGAGGCGGACAGGGGTCTAGACACTGTAGACACCGACGATGTGGTG
GTCACCCAACCGCAGGTCCAAGCTGTGCTTCCGATAACCAGAGACCTTCA
TCCAAACCATCAACCGCAACCTGAGAGTCCGAGGCCACAGAGCCCAGAAA
CGGACTTCTAAAAGCTTTCTAGACCAT

BS11415.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp33Eb-RA 2445 CG6417-PA 1..2445 17..2461 12225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp33Eb-RA 2743 CG6417-RA 179..2626 17..2464 12240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12449832..12451131 430..1729 6500 100 Plus
2L 23513712 2L 12451194..12451930 1728..2464 3685 100 Plus
2L 23513712 2L 12448806..12448995 83..272 950 100 Plus
2L 23513712 2L 12449596..12449753 272..429 790 100 Plus
2L 23513712 2L 12448662..12448728 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:14:17 has no hits.

BS11415.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:56 Download gff for BS11415.complete
Subject Subject Range Query Range Percent Splice Strand
Oatp33Eb-RA 177..2619 17..2459 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:25 Download gff for BS11415.complete
Subject Subject Range Query Range Percent Splice Strand
Oatp33Eb-RA 179..2621 17..2459 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:04 Download gff for BS11415.complete
Subject Subject Range Query Range Percent Splice Strand
Oatp33Eb-RA 177..2619 17..2459 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:53 Download gff for BS11415.complete
Subject Subject Range Query Range Percent Splice Strand
Oatp33Eb-RA 179..2621 17..2459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:53 Download gff for BS11415.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12448662..12448728 17..83 100 -> Plus
2L 12448807..12448995 84..272 100 -> Plus
2L 12449597..12449753 273..429 100 -> Plus
2L 12449832..12451129 430..1727 100 -> Plus
2L 12451194..12451925 1728..2459 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:25 Download gff for BS11415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12448662..12448728 17..83 100 -> Plus
arm_2L 12448807..12448995 84..272 100 -> Plus
arm_2L 12449597..12449753 273..429 100 -> Plus
arm_2L 12449832..12451129 430..1727 100 -> Plus
arm_2L 12451194..12451925 1728..2459 100   Plus

BS11415.pep Sequence

Translation from 16 to 2460

> BS11415.pep
MAHNTRNSDLSQIAVNANNIPDDSVDCGIKGLGWCRGPGCQKYARLRTFI
LVLAISGTLQGACESYFRVSAKQASFQFGWNPLIVDWLLVASGLFQAVFA
LAFAYWADVYHPIKWLVGTLMLQAVTCVVAVIPSIMNFADGNQAKDALLD
ANMCATSLAQFQRLTLTEAQSSSLTLAMLFVLQLALGMGGLAYYTLGVSY
IDDNSLSQDSPAVIGAALAARVFGQQAGSFLVLGVGLTHVGWWLGWVILA
PFIFVGAVLLGLFPKRLPKTVIHQAAQRIIEQSSMRRFGSQFSTYMDDSD
FWPSLKRLFNNRLLMFNLLSIMCVQSAVVNYGLQEESYLQSRFFLPYNEQ
DGLAAEWRSAFVSYFLKPPVMALGMLISGLVISKAKLSARKITGINIALS
IHLVAIFIGLIFVQCDVGAIAGVEGGKLKQPYCSSQCLCTPTAFMPVCPE
NSSVTYFSPCYAGCTKKTTINSFQLFEGCSCSGDQSLNSTGQMRATAGAC
SSDNCQSAIIIFQIMSISVAFLMGVGAIGKTLITLRAVLPQDKSLALAFE
LMIVGLFAYVPVHLSYDIVTRTTCVYWAPNYERCLLRETPKHGNILDILT
ASLILASVLFDILVYIFAKGLNLYNCKVTDNNYTPSLYAPIPHEDATTSP
SAPRGGSPVTTTTTSSPIQRRDAAPEPRTETAVFRNPSSVTTSSGGAQSI
VEPSESGVTYAQVVFPPDRRKPDDGSTSPKRLAVPANVPLHLLSESDVRS
QLGNLKSFNPPKQEADRGLDTVDTDDVVVTQPQVQAVLPITRDLHPNHQP
QPESPRPQSPETDF*

BS11415.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp33Eb-PA 814 CG6417-PA 1..814 1..814 4214 100 Plus
Oatp58Db-PB 680 CG3382-PB 36..652 31..625 511 25.1 Plus
Oatp58Dc-PC 789 CG3380-PC 89..764 22..625 461 23.4 Plus
Oatp58Dc-PB 789 CG3380-PB 89..764 22..625 461 23.4 Plus
Oatp58Dc-PA 789 CG3380-PA 89..764 22..625 461 23.4 Plus