Clone Sequence Records
BS11416.3prime Sequence
884 bp (830 high quality bases) assembled on 2006-05-08
> BS11416.3prime
ATGGTCTAGAAAGCTTTTAGCCATTTAGAAATTGTTCCAGAGCATCCTTT
GTCTCCACTTCGTTGGCTTCAAGGACGACTTCCTCCAGAGCCAACTTGTT
GCTGGTGGTTTGAATTTTTGTCAGCTGGCCGCGCTGTTTGTACTCCTCCA
TATCCTCCCGGAAGGCGTCGTCGAAGACAGCCTGTCGTTCCCTCTGCAGC
TTCAGGAGGGTCTGCTCCTGATCCTTGATTTTGGATTGGTGTTTCTGGGC
TATTTGCTGGCGATACTGCTCCAGTTCGTTCAGTTTCTTTTGCTTGTGCC
GGGAGAGCTGAAACTGCTGCTCAAGGATGAACTCTTGGAGCTCACACTCC
TCGCGCAGATCCTCCAGCTTCTCGAGCTCAATCTCCAACTGCTTACCCAT
TTCCTCCAGGGAATTAAGAACCTGTGAGCTGTTTTGCAGTTGGGCTATCA
ACGTGGGAATTCCCGCCAGACTACTGTTCAGCTCACTCATGATCCTGTGC
TGATGGCTGGCCTGGTCTTGGATGCCGGAGATTTGGTTAGCAATCTGCGC
AGCCTTCTCCGCGTTCTTTTCGTTGGCGCCATGAATCTGCTGCCAATCAT
CCTCGTATTTGGCAAGCAAACTGCAACCAGCTGCCACATTTAGGTGACTG
GGCACTCCATCGGTTAGCTGGAAGGGAGCACTAAGGGAGAGGCTACTGCT
CCTGCTGGACGACAGACTTTCGTTAAGGCCCAGTGGCGAAATGGGGGTCG
TAATCCCACTGGCTTGGCTACTCCCCGAGTTTCCGGAACTGACACGCTGG
CGATATTGCTGTTGCAGATTCTCCGAGATCACCAGGCCCTCCTGGATCGC
ACTGCTAAGCTTCTTTTTCAGGTTCCCGAACATG
BS11416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6856-PA | 867 | CG6856-RA | 1..867 | 883..17 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dysb-RB | 1117 | CG6856-RB | 110..976 | 883..17 | 4335 | 100 | Minus |
| Dysb-RA | 1391 | CG6856-RA | 110..976 | 883..17 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18867880..18868645 | 883..118 | 3830 | 100 | Minus |
| 3L | 28110227 | 3L | 18868704..18868804 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 12:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2868 | 297..187 | 132 | 60.2 | Minus |
BS11416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:24 Download gff for
BS11416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6856-PA | 1..867 | 17..883 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:40 Download gff for
BS11416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6856-PA | 1..867 | 17..883 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:25 Download gff for
BS11416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dysb-RA | 109..978 | 12..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:40 Download gff for
BS11416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dysb-RA | 109..978 | 12..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:40 Download gff for
BS11416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18868704..18868806 | 12..117 | 97 | | Minus |
| 3L | 18867879..18868645 | 118..884 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:25 Download gff for
BS11416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18860979..18861745 | 118..884 | 99 | -> | Minus |
| arm_3L | 18861804..18861906 | 12..117 | 97 | | Minus |
BS11416.5prime Sequence
830 bp (829 high quality bases) assembled on 2006-05-08
> BS11416.5prime
GAAGTTATCAGTCGACATGTTCGGGAACCTGAAAAAGAAGCTTAGCAGTG
CGATCCAGGAGGGCCTGGTGATCTCGGAGAATCTGCAACAGCAATATCGC
CAGCGTGTCAGTTCCGGAAACTCGGGGAGTAGCCAAGCCAGTGGGATTAC
GACCCCCATTTCGCCACTGGGCCTTAACGAAAGTCTGTCGTCCAGCAGGA
GCAGTAGCCTCTCCCTTAGTGCTCCCTTCCAGCTAACCGATGGAGTGCCC
AGTCACCTAAATGTGGCAGCTGGTTGCAGTTTGCTTGCCAAATACGAGGA
TGATTGGCAGCAGATTCATGGCGCCAACGAAAAGAACGCGGAGAAGGCTG
CGCAGATTGCTAACCAAATCTCCGGCATCCAAGACCAGGCCAGCCATCAG
CACAGGATCATGAGTGAGCTGAACAGTAGTCTGGCGGGAATTCCCACGTT
GATAGCCCAACTGCAAAACAGCTCACAGGTTCTTAATTCCCTGGAGGAAA
TGGGTAAGCAGTTGGAGATTGAGCTCGAGAAGCTGGAGGATCTGCGCGAG
GAGTGTGAGCTCCAAGAGTTCATCCTTGAGCAGCAGTTTCAGCTCTCCCG
GCACAAGCAAAAGAAACTGAACGAACTGGAGCAGTATCGCCAGCAAATAG
CCCAGAAACACCAATCCAAAATCAAGGATCAGGAGCAGACCCTCCTGAAG
CTGCAGAGGGAACGACAGGCTGTCTTCGACGACGCCTTCCGGGAGGATAT
GGAGGAGTACAAACAGCGCGGCCAGCTGACAAAAATTCAAACCACCAGCA
ACAAGTTGGCTCTGGAGGAAGTCGTCCTTG
BS11416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6856-PA | 867 | CG6856-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dysb-RB | 1117 | CG6856-RB | 110..923 | 17..830 | 4070 | 100 | Plus |
| Dysb-RA | 1391 | CG6856-RA | 110..923 | 17..830 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18867880..18868645 | 17..782 | 3830 | 100 | Plus |
| 3L | 28110227 | 3L | 18868704..18868751 | 783..830 | 240 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2868 | 603..713 | 132 | 60.2 | Plus |
BS11416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:25 Download gff for
BS11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6856-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:42 Download gff for
BS11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6856-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:07:40 Download gff for
BS11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dysb-RA | 103..923 | 8..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:45 Download gff for
BS11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dysb-RA | 103..923 | 8..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:45 Download gff for
BS11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18867873..18868645 | 8..782 | 99 | -> | Plus |
| 3L | 18868704..18868751 | 783..830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:07:40 Download gff for
BS11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18860973..18861745 | 8..782 | 99 | -> | Plus |
| arm_3L | 18861804..18861851 | 783..830 | 100 | | Plus |
BS11416.complete Sequence
899 bp assembled on 2006-11-01
GenBank Submission: FJ636858
> BS11416.complete
GAAGTTATCAGTCGACATGTTCGGGAACCTGAAAAAGAAGCTTAGCAGTG
CGATCCAGGAGGGCCTGGTGATCTCGGAGAATCTGCAACAGCAATATCGC
CAGCGTGTCAGTTCCGGAAACTCGGGGAGTAGCCAAGCCAGTGGGATTAC
GACCCCCATTTCGCCACTGGGCCTTAACGAAAGTCTGTCGTCCAGCAGGA
GCAGTAGCCTCTCCCTTAGTGCTCCCTTCCAGCTAACCGATGGAGTGCCC
AGTCACCTAAATGTGGCAGCTGGTTGCAGTTTGCTTGCCAAATACGAGGA
TGATTGGCAGCAGATTCATGGCGCCAACGAAAAGAACGCGGAGAAGGCTG
CGCAGATTGCTAACCAAATCTCCGGCATCCAAGACCAGGCCAGCCATCAG
CACAGGATCATGAGTGAGCTGAACAGTAGTCTGGCGGGAATTCCCACGTT
GATAGCCCAACTGCAAAACAGCTCACAGGTTCTTAATTCCCTGGAGGAAA
TGGGTAAGCAGTTGGAGATTGAGCTCGAGAAGCTGGAGGATCTGCGCGAG
GAGTGTGAGCTCCAAGAGTTCATCCTTGAGCAGCAGTTTCAGCTCTCCCG
GCACAAGCAAAAGAAACTGAACGAACTGGAGCAGTATCGCCAGCAAATAG
CCCAGAAACACCAATCCAAAATCAAGGATCAGGAGCAGACCCTCCTGAAG
CTGCAGAGGGAACGACAGGCTGTCTTCGACGACGCCTTCCGGGAGGATAT
GGAGGAGTACAAACAGCGCGGCCAGCTGACAAAAATTCAAACCACCAGCA
ACAAGTTGGCTCTGGAGGAAGTCGTCCTTGAAGCCAACGAAGTGGAGACA
AAGGATGCTCTGGAACAATTTCTAAATGGCTAAAAGCTTTCTAGACCAT
BS11416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dysb-RB | 867 | CG6856-PB | 1..867 | 17..883 | 4335 | 100 | Plus |
| Dysb-RA | 867 | CG6856-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dysb-RB | 1117 | CG6856-RB | 110..976 | 17..883 | 4335 | 100 | Plus |
| Dysb-RA | 1391 | CG6856-RA | 110..976 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18867880..18868645 | 17..782 | 3830 | 100 | Plus |
| 3L | 28110227 | 3L | 18868704..18868804 | 783..883 | 505 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2868 | 603..713 | 132 | 60.2 | Plus |
BS11416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:09 Download gff for
BS11416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6856-RA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:20 Download gff for
BS11416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6856-RA | 97..972 | 8..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:29 Download gff for
BS11416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dysb-RA | 115..974 | 22..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:09 Download gff for
BS11416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6856-RA | 97..972 | 8..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:40 Download gff for
BS11416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dysb-RA | 115..974 | 22..881 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:40 Download gff for
BS11416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18867885..18868645 | 22..782 | 100 | -> | Plus |
| 3L | 18868704..18868802 | 783..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:29 Download gff for
BS11416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18860985..18861745 | 22..782 | 100 | -> | Plus |
| arm_3L | 18861804..18861902 | 783..881 | 100 | | Plus |
BS11416.pep Sequence
Translation from 16 to 882
> BS11416.pep
MFGNLKKKLSSAIQEGLVISENLQQQYRQRVSSGNSGSSQASGITTPISP
LGLNESLSSSRSSSLSLSAPFQLTDGVPSHLNVAAGCSLLAKYEDDWQQI
HGANEKNAEKAAQIANQISGIQDQASHQHRIMSELNSSLAGIPTLIAQLQ
NSSQVLNSLEEMGKQLEIELEKLEDLREECELQEFILEQQFQLSRHKQKK
LNELEQYRQQIAQKHQSKIKDQEQTLLKLQRERQAVFDDAFREDMEEYKQ
RGQLTKIQTTSNKLALEEVVLEANEVETKDALEQFLNG*
BS11416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dysb-PB | 288 | CG6856-PB | 1..288 | 1..288 | 1422 | 100 | Plus |
| Dysb-PA | 288 | CG6856-PA | 1..288 | 1..288 | 1422 | 100 | Plus |
