Clone Sequence Records
BS11417.3prime Sequence
405 bp (404 high quality bases) assembled on 2006-05-08
> BS11417.3prime
ATGGTCTAGAAAGCTTTTAGGCCTCGGTGACAGCCTGTTTAATGTCCTCC
AAATAGCCATCGACCTGGTGCTCCAGTGCGAGAATGTGTCCCGTGTTACA
GTTCTCCGCGCCCACAAAGGTCAGGATGAGCGGCAGCTTGTTCATCTGGA
CCACCTGGTAATTGGAGTACATGGAGATGATGGTCTTGTTTCTGCCCAAT
CCCAGTTTGCTGGCCTGATCGCAGGCGGTGGTGAATGTGGGTATGAACGA
GGGCATCAGGGCGAAGTCCACGTTCTTCTCCTGGCTAACCCGCAGGAGGG
GCACTCCGTCGCGATCCGTAATCTGAATAACGTACAGCCCGCTGACCTTT
TGCAGCAGGCCGTCTAAATACTTCTTGATGTCGTCCGACATGTCGACTGA
TAACT
BS11417.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5110-PA | 375 | CG5110-RA | 1..375 | 391..17 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5110-RB | 729 | CG5110-RB | 103..479 | 392..16 | 1885 | 100 | Minus |
CG5110-RA | 548 | CG5110-RA | 103..479 | 392..16 | 1885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17481452..17481787 | 351..16 | 1665 | 99.7 | Minus |
2L | 23513712 | 2L | 17481333..17481378 | 392..347 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:19:35 has no hits.
BS11417.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:26 Download gff for
BS11417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-PA | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:43 Download gff for
BS11417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-PA | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:20 Download gff for
BS11417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-RA | 101..488 | 7..396 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:43:52 Download gff for
BS11417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-RA | 101..488 | 7..396 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:43:52 Download gff for
BS11417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17481331..17481377 | 348..396 | 95 | -> | Minus |
2L | 17481456..17481796 | 7..347 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:20 Download gff for
BS11417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17481331..17481377 | 348..396 | 95 | -> | Minus |
arm_2L | 17481456..17481796 | 7..347 | 98 | | Minus |
BS11417.5prime Sequence
405 bp (404 high quality bases) assembled on 2006-05-08
> BS11417.5prime
GAAGTTATCAGTCGACATGTCGGACGACATCAAGAAGTATTTAGACGGCC
TGCTGCAAAAGGTCAGCGGGCTGTACGTTATTCAGATTACGGATCGCGAC
GGAGTGCCCCTCCTGCGGGTTAGCCAGGAGAAGAACGTGGACTTCGCCCT
GATGCCCTCGTTCATACCCACATTCACCACCGCCTGCGATCAGGCCAGCA
AACTGGGATTGGGCAGAAACAAGACCATCATCTCCATGTACTCCAATTAC
CAGGTGGTCCAGATGAACAAGCTGCCGCTCATCCTGACCTTTGTGGGCGC
GGAGAACTGTAACACGGGACACATTCTCGCACTGGAGCACCAGGTCGATG
GCTATTTGGAGGACATTAAACAGGCTGTCACCGAGGCCTAAAAGCTTTCT
AGACC
BS11417.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5110-PA | 375 | CG5110-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5110-RB | 729 | CG5110-RB | 103..479 | 16..392 | 1885 | 100 | Plus |
CG5110-RA | 548 | CG5110-RA | 103..479 | 16..392 | 1885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17481452..17481787 | 57..392 | 1665 | 99.7 | Plus |
2L | 23513712 | 2L | 17481333..17481378 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:17:36 has no hits.
BS11417.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:27 Download gff for
BS11417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-PA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:46 Download gff for
BS11417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-PA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:01 Download gff for
BS11417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-RA | 101..488 | 12..401 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:00 Download gff for
BS11417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-RA | 101..488 | 12..401 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:00 Download gff for
BS11417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17481331..17481377 | 12..60 | 95 | -> | Plus |
2L | 17481456..17481796 | 61..401 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:01 Download gff for
BS11417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17481331..17481377 | 12..60 | 95 | -> | Plus |
arm_2L | 17481456..17481796 | 61..401 | 98 | | Plus |
BS11417.complete Sequence
407 bp assembled on 2006-11-01
GenBank Submission: FJ636859
> BS11417.complete
GAAGTTATCAGTCGACATGTCGGACGACATCAAGAAGTATTTAGACGGCC
TGCTGCAAAAGGTCAGCGGGCTGTACGTTATTCAGATTACGGATCGCGAC
GGAGTGCCCCTCCTGCGGGTTAGCCAGGAGAAGAACGTGGACTTCGCCCT
GATGCCCTCGTTCATACCCACATTCACCACCGCCTGCGATCAGGCCAGCA
AACTGGGATTGGGCAGAAACAAGACCATCATCTCCATGTACTCCAATTAC
CAGGTGGTCCAGATGAACAAGCTGCCGCTCATCCTGACCTTTGTGGGCGC
GGAGAACTGTAACACGGGACACATTCTCGCACTGGAGCACCAGGTCGATG
GCTATTTGGAGGACATTAAACAGGCTGTCACCGAGGCCTAAAAGCTTTCT
AGACCAT
BS11417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5110-RB | 375 | CG5110-PB | 1..375 | 17..391 | 1875 | 100 | Plus |
CG5110-RA | 375 | CG5110-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5110-RB | 729 | CG5110-RB | 103..479 | 16..392 | 1885 | 100 | Plus |
CG5110-RA | 548 | CG5110-RA | 103..479 | 16..392 | 1885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17481452..17481787 | 57..392 | 1665 | 99.7 | Plus |
2L | 23513712 | 2L | 17481333..17481378 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:46:25 has no hits.
BS11417.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:10 Download gff for
BS11417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-RA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:21 Download gff for
BS11417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-RA | 86..473 | 12..401 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:40 Download gff for
BS11417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-RA | 104..476 | 17..389 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:10 Download gff for
BS11417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-RA | 86..473 | 12..401 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:57 Download gff for
BS11417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5110-RA | 104..476 | 17..389 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:57 Download gff for
BS11417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17481334..17481377 | 17..60 | 100 | -> | Plus |
2L | 17481456..17481784 | 61..389 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:40 Download gff for
BS11417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17481334..17481377 | 17..60 | 100 | -> | Plus |
arm_2L | 17481456..17481784 | 61..389 | 100 | | Plus |
BS11417.pep Sequence
Translation from 16 to 390
> BS11417.pep
MSDDIKKYLDGLLQKVSGLYVIQITDRDGVPLLRVSQEKNVDFALMPSFI
PTFTTACDQASKLGLGRNKTIISMYSNYQVVQMNKLPLILTFVGAENCNT
GHILALEHQVDGYLEDIKQAVTEA*
BS11417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5110-PB | 124 | CG5110-PB | 1..124 | 1..124 | 631 | 100 | Plus |
CG5110-PA | 124 | CG5110-PA | 1..124 | 1..124 | 631 | 100 | Plus |