Clone BS11417 Report

Search the DGRC for BS11417

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG5110-RA
Protein status:BS11417.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11417.3prime Sequence

405 bp (404 high quality bases) assembled on 2006-05-08

> BS11417.3prime
ATGGTCTAGAAAGCTTTTAGGCCTCGGTGACAGCCTGTTTAATGTCCTCC
AAATAGCCATCGACCTGGTGCTCCAGTGCGAGAATGTGTCCCGTGTTACA
GTTCTCCGCGCCCACAAAGGTCAGGATGAGCGGCAGCTTGTTCATCTGGA
CCACCTGGTAATTGGAGTACATGGAGATGATGGTCTTGTTTCTGCCCAAT
CCCAGTTTGCTGGCCTGATCGCAGGCGGTGGTGAATGTGGGTATGAACGA
GGGCATCAGGGCGAAGTCCACGTTCTTCTCCTGGCTAACCCGCAGGAGGG
GCACTCCGTCGCGATCCGTAATCTGAATAACGTACAGCCCGCTGACCTTT
TGCAGCAGGCCGTCTAAATACTTCTTGATGTCGTCCGACATGTCGACTGA
TAACT

BS11417.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5110-PA 375 CG5110-RA 1..375 391..17 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5110-RB 729 CG5110-RB 103..479 392..16 1885 100 Minus
CG5110-RA 548 CG5110-RA 103..479 392..16 1885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17481452..17481787 351..16 1665 99.7 Minus
2L 23513712 2L 17481333..17481378 392..347 230 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:19:35 has no hits.

BS11417.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:26 Download gff for BS11417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5110-PA 1..375 17..391 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:43 Download gff for BS11417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5110-PA 1..375 17..391 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:20 Download gff for BS11417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5110-RA 101..488 7..396 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:43:52 Download gff for BS11417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5110-RA 101..488 7..396 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:43:52 Download gff for BS11417.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17481331..17481377 348..396 95 -> Minus
2L 17481456..17481796 7..347 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:20 Download gff for BS11417.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17481331..17481377 348..396 95 -> Minus
arm_2L 17481456..17481796 7..347 98   Minus

BS11417.5prime Sequence

405 bp (404 high quality bases) assembled on 2006-05-08

> BS11417.5prime
GAAGTTATCAGTCGACATGTCGGACGACATCAAGAAGTATTTAGACGGCC
TGCTGCAAAAGGTCAGCGGGCTGTACGTTATTCAGATTACGGATCGCGAC
GGAGTGCCCCTCCTGCGGGTTAGCCAGGAGAAGAACGTGGACTTCGCCCT
GATGCCCTCGTTCATACCCACATTCACCACCGCCTGCGATCAGGCCAGCA
AACTGGGATTGGGCAGAAACAAGACCATCATCTCCATGTACTCCAATTAC
CAGGTGGTCCAGATGAACAAGCTGCCGCTCATCCTGACCTTTGTGGGCGC
GGAGAACTGTAACACGGGACACATTCTCGCACTGGAGCACCAGGTCGATG
GCTATTTGGAGGACATTAAACAGGCTGTCACCGAGGCCTAAAAGCTTTCT
AGACC

BS11417.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5110-PA 375 CG5110-RA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5110-RB 729 CG5110-RB 103..479 16..392 1885 100 Plus
CG5110-RA 548 CG5110-RA 103..479 16..392 1885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17481452..17481787 57..392 1665 99.7 Plus
2L 23513712 2L 17481333..17481378 16..61 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:17:36 has no hits.

BS11417.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:27 Download gff for BS11417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5110-PA 1..375 17..391 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:46 Download gff for BS11417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5110-PA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:01 Download gff for BS11417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5110-RA 101..488 12..401 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:00 Download gff for BS11417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5110-RA 101..488 12..401 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:00 Download gff for BS11417.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17481331..17481377 12..60 95 -> Plus
2L 17481456..17481796 61..401 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:01 Download gff for BS11417.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17481331..17481377 12..60 95 -> Plus
arm_2L 17481456..17481796 61..401 98   Plus

BS11417.complete Sequence

407 bp assembled on 2006-11-01

GenBank Submission: FJ636859

> BS11417.complete
GAAGTTATCAGTCGACATGTCGGACGACATCAAGAAGTATTTAGACGGCC
TGCTGCAAAAGGTCAGCGGGCTGTACGTTATTCAGATTACGGATCGCGAC
GGAGTGCCCCTCCTGCGGGTTAGCCAGGAGAAGAACGTGGACTTCGCCCT
GATGCCCTCGTTCATACCCACATTCACCACCGCCTGCGATCAGGCCAGCA
AACTGGGATTGGGCAGAAACAAGACCATCATCTCCATGTACTCCAATTAC
CAGGTGGTCCAGATGAACAAGCTGCCGCTCATCCTGACCTTTGTGGGCGC
GGAGAACTGTAACACGGGACACATTCTCGCACTGGAGCACCAGGTCGATG
GCTATTTGGAGGACATTAAACAGGCTGTCACCGAGGCCTAAAAGCTTTCT
AGACCAT

BS11417.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5110-RB 375 CG5110-PB 1..375 17..391 1875 100 Plus
CG5110-RA 375 CG5110-PA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5110-RB 729 CG5110-RB 103..479 16..392 1885 100 Plus
CG5110-RA 548 CG5110-RA 103..479 16..392 1885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17481452..17481787 57..392 1665 99.7 Plus
2L 23513712 2L 17481333..17481378 16..61 230 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:46:25 has no hits.

BS11417.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:10 Download gff for BS11417.complete
Subject Subject Range Query Range Percent Splice Strand
CG5110-RA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:21 Download gff for BS11417.complete
Subject Subject Range Query Range Percent Splice Strand
CG5110-RA 86..473 12..401 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:40 Download gff for BS11417.complete
Subject Subject Range Query Range Percent Splice Strand
CG5110-RA 104..476 17..389 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:10 Download gff for BS11417.complete
Subject Subject Range Query Range Percent Splice Strand
CG5110-RA 86..473 12..401 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:57 Download gff for BS11417.complete
Subject Subject Range Query Range Percent Splice Strand
CG5110-RA 104..476 17..389 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:57 Download gff for BS11417.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17481334..17481377 17..60 100 -> Plus
2L 17481456..17481784 61..389 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:40 Download gff for BS11417.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17481334..17481377 17..60 100 -> Plus
arm_2L 17481456..17481784 61..389 100   Plus

BS11417.pep Sequence

Translation from 16 to 390

> BS11417.pep
MSDDIKKYLDGLLQKVSGLYVIQITDRDGVPLLRVSQEKNVDFALMPSFI
PTFTTACDQASKLGLGRNKTIISMYSNYQVVQMNKLPLILTFVGAENCNT
GHILALEHQVDGYLEDIKQAVTEA*

BS11417.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5110-PB 124 CG5110-PB 1..124 1..124 631 100 Plus
CG5110-PA 124 CG5110-PA 1..124 1..124 631 100 Plus