Clone Sequence Records
BS11418.3prime Sequence
799 bp (748 high quality bases) assembled on 2006-05-08
> BS11418.3prime
ATGGTCTAGAAAGCTTTCAGCAGCTTCCCAGGACGCAGGAGGATAGCTCC
GGTCGGTAGTAAGTCCCATTGGGGCAGTCCATGTGCCGCAGGGTGCCATT
TAGAGCCGAGCAGTAGTAGTACTTCCGGCAGTCGTTTCCATCGGCCATCA
AGCCCACGTGCTGACAGGTGTTGGGCAGCACCGAAAAGTCGTCGTCGTTG
GGATCCTCGATGATCACCGAAGGATCATCGGTGCTGGGCGGCAGGACATT
CGATCCGCTGCGGCAGACGTAGTCCACGAAGGTCTCGCCATCGTTGCACC
TGTGCAGCGAGGGGTAGATGACGATGGTGTCGTTCAGGTTCTGGTTAACC
GTCGACTTGCACACGTAGAAGATATTGGGATTGGTGGGCCAGGCGGCCAC
GTGTCCGGCATTGGGGCAGTAGTACTGTCGCTGCAGGCAGACGGAGTCAG
TCAGGGTCAAAGTGCACTGGCCAGTCGTCGCATCGAAGGCCTTGTCGTTG
CCGCAATCAACGGCAGCAGCCACCAGAGTGGCCCCCACGAAGTAGCACAT
GTGGTACTTCTGGCAGTCGTACGGATCTGGAAAGATGCCTTGCGAGGTGC
ACTGAAAGTTGCCCTCGATGCCGAACGGATGACACGGGCCCGTCTCGTTG
GTGCAGCTCCCCAGCCGGGCGTTGCAGTAGTATCCATTAGCCACGTCGCA
CGATTCCACGGGAATGTTCACCCATCCGTTGGAGTGACGCACGCAGGTGG
CCAGCAGCTCGCAGGACTCGCAGATGGGCCCGGGACTCTGACGGCCCTC
BS11418.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-PA | 894 | CG13806-RA | 112..894 | 799..17 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-RA | 1175 | CG13806-RA | 220..1002 | 799..17 | 3915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2266685..2267467 | 799..17 | 3915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:47:04 has no hits.
BS11418.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:28 Download gff for
BS11418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-PA | 112..894 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:47 Download gff for
BS11418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-PA | 112..894 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:51:58 Download gff for
BS11418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 220..1002 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:23 Download gff for
BS11418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 220..1002 | 17..799 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:23 Download gff for
BS11418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2266685..2267467 | 17..799 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:51:58 Download gff for
BS11418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2266685..2267467 | 17..799 | 100 | | Minus |
BS11418.5prime Sequence
878 bp (799 high quality bases) assembled on 2006-05-08
> BS11418.5prime
GAAGTTATCAGTCGACATGTTCTTGGAAAGAATACTAGTGAGCGTGTTAC
TGCTCAACCTGGTGGCTCTGCTTATGGGAGCCACTGTTACCACCCGGCGC
ATCCAGCCGCGGGAGACAAACTCCTGCGAGGGCCGTCAGAGTCCCGGGCC
CATCTGCGAGTCCTGCGAGCTGCTGGCCACCTGCGTGCGTCACTCCAACG
GATGGGTGAACATTCCCGTGGAATCGTGCGACGTGGCTAATGGATACTAC
TGCAACGCCCGGCTGGGGAGCTGCACCAACGAGACGGGCCCGTGTCATCC
GTTCGGCATCGAGGGCAACTTTCAGTGCACCTCGCAAGGCATCTTTCCAG
ATCCGTACGACTGCCAGAAGTACCACATGTGCTACTTCGTGGGGGCCACT
CTGGTGGCTGCTGCCGTTGATTGCGGCAACGACAAGGCCTTCGATGCGAC
GACTGGCCAGTGCACTTTGACCCTGACTGACTCCGTCTGCCTGCAGCGAC
AGTACTACTGCCCCAATGCCGGACACGTGGCCGCCTGGCCCACCAATCCC
AATATCTTCTACGTGTGCAAGTCGACGGTTAACCAGAACCTGAACGACAC
CATCGTCATCTACCCCTCGCTGCACAGGTGCAACGATGGCGAGACCTTCG
TGGACTACGTCTGCCGCAGCGGATCGAATGTCCTGCCGCCCAGCACCGAT
GATCCTTCGGTGATCATCGAGGATCCCAACGACGACGACTTTTCGGTGCT
GCCCAACACCTGTCAGCACGTGGGCTTGATGGCCGATGGAAACGACTGCC
GGAAGTACTACTACTGCTCGGCTCTAAATGGCACCCTGCGGCACATGGAC
TGCCCCAATGGGACTTACTTACGACCGG
BS11418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-PA | 894 | CG13806-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-RA | 1175 | CG13806-RA | 104..970 | 12..878 | 4290 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2266603..2267435 | 46..878 | 4135 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:27:49 has no hits.
BS11418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:29 Download gff for
BS11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:49 Download gff for
BS11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:42 Download gff for
BS11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 96..970 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:48 Download gff for
BS11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 96..970 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:48 Download gff for
BS11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2266604..2267435 | 47..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:42 Download gff for
BS11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2266604..2267435 | 47..878 | 99 | | Plus |
BS11418.complete Sequence
926 bp assembled on 2006-11-01
GenBank Submission: FJ636860
> BS11418.complete
GAAGTTATCAGTCGACATGTTCTTGGAAAGAATACTAGTGAGCGTGTTAC
TGCTCAACCTGGTGGCTCTGCTTATGGGAGCCACTGTTACCACCCGGCGC
ATCCAGCCGCGGGAGACAAACTCCTGCGAGGGCCGTCAGAGTCCCGGGCC
CATCTGCGAGTCCTGCGAGCTGCTGGCCACCTGCGTGCGTCACTCCAACG
GATGGGTGAACATTCCCGTGGAATCGTGCGACGTGGCTAATGGATACTAC
TGCAACGCCCGGCTGGGGAGCTGCACCAACGAGACGGGCCCGTGTCATCC
GTTCGGCATCGAGGGCAACTTTCAGTGCACCTCGCAAGGCATCTTTCCAG
ATCCGTACGACTGCCAGAAGTACCACATGTGCTACTTCGTGGGGGCCACT
CTGGTGGCTGCTGCCGTTGATTGCGGCAACGACAAGGCCTTCGATGCGAC
GACTGGCCAGTGCACTTTGACCCTGACTGACTCCGTCTGCCTGCAGCGAC
AGTACTACTGCCCCAATGCCGGACACGTGGCCGCCTGGCCCACCAATCCC
AATATCTTCTACGTGTGCAAGTCGACGGTTAACCAGAACCTGAACGACAC
CATCGTCATCTACCCCTCGCTGCACAGGTGCAACGATGGCGAGACCTTCG
TGGACTACGTCTGCCGCAGCGGATCGAATGTCCTGCCGCCCAGCACCGAT
GATCCTTCGGTGATCATCGAGGATCCCAACGACGACGACTTTTCGGTGCT
GCCCAACACCTGTCAGCACGTGGGCTTGATGGCCGATGGAAACGACTGCC
GGAAGTACTACTACTGCTCGGCTCTAAATGGCACCCTGCGGCACATGGAC
TGCCCCAATGGGACTTACTACCGACCGGAGCTATCCTCCTGCGTCCTGGG
AAGCTGCTGAAAGCTTTCTAGACCAT
BS11418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-RA | 894 | CG13806-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-RA | 1175 | CG13806-RA | 104..1002 | 12..910 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2266603..2267467 | 46..910 | 4325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:54:19 has no hits.
BS11418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:48 Download gff for
BS11418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:55 Download gff for
BS11418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 96..1002 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:52 Download gff for
BS11418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 114..1001 | 22..909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:48 Download gff for
BS11418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 96..1002 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:05 Download gff for
BS11418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 114..1001 | 22..909 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:05 Download gff for
BS11418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2266507..2266531 | 22..46 | 100 | -> | Plus |
| 3L | 2266604..2267466 | 47..909 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:52 Download gff for
BS11418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2266507..2266531 | 22..46 | 100 | -> | Plus |
| arm_3L | 2266604..2267466 | 47..909 | 100 | | Plus |
BS11418.pep Sequence
Translation from 16 to 909
> BS11418.pep
MFLERILVSVLLLNLVALLMGATVTTRRIQPRETNSCEGRQSPGPICESC
ELLATCVRHSNGWVNIPVESCDVANGYYCNARLGSCTNETGPCHPFGIEG
NFQCTSQGIFPDPYDCQKYHMCYFVGATLVAAAVDCGNDKAFDATTGQCT
LTLTDSVCLQRQYYCPNAGHVAAWPTNPNIFYVCKSTVNQNLNDTIVIYP
SLHRCNDGETFVDYVCRSGSNVLPPSTDDPSVIIEDPNDDDFSVLPNTCQ
HVGLMADGNDCRKYYYCSALNGTLRHMDCPNGTYYRPELSSCVLGSC*
BS11418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-PA | 297 | CG13806-PA | 1..297 | 1..297 | 1659 | 100 | Plus |
| CG32302-PA | 313 | CG32302-PA | 24..258 | 35..293 | 301 | 28.7 | Plus |
