Clone Sequence Records
BS11419.3prime Sequence
708 bp (707 high quality bases) assembled on 2006-05-08
> BS11419.3prime
ATGGTCTAGAAAGCTTTCATCGATGTCGAATCTTCTTGTTTATGTGACCG
CTTTTCTTCGCTGTCGCACTGGAGTTCGTGGATAGTTTGCTCTTTGTATT
CGAAGTGGGTGTGCCGAGGAGATCCTTGTTCCCTCCACTGTTCGTAGATC
CAGACACCATTCCGCTCACTACGCTGCCCTCATTGCGATGCGAGGGTGAA
TCCTTTTCGTCTTTCGGTGTGCTCTTGATTGTCGTGGTTCCGTCGTGGGC
CGTTGTGGTGTTCTGATTGATTGAGATCTGATTGTCGCTGGAGTCTTCAT
TTGTGATGGAATCCGATTCGCTGGCGCGCTCAGGATTGCATATAGCCATG
GAGGTGATGCTGGACTTGGAGAACAGGCGCTCGGCCTCCTTGAACTTGCG
ATTCCGCTTGTCGGCCTTGGAGTTGGTGGCCTTGTTGGAGGTCAGATAGC
GCTCCCAGCCTCGGATGATGTTTCCGCACAACTGCGTGTCCTCTAGGTAG
GAGCCCTCGAAGGCGTAGATCTGTCGCTCCAGATTGGCCAGTTGTTCCGA
TGTTTCGGCCTTCTTCTTGATGAGGTCCGCCAACTCGGCGCGAGTGTCCA
TGGAGCCGCCTTTCGTATTCGAGCTCGTTTTGGCCGACTTCTTTGGCTTG
TTCCCGTTCGTTTCGCTGACATTTTTACTCGTTGGCGAGCTCATGTCGAC
TGATAACT
BS11419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12756-PA | 678 | Eaf6-RA | 1..678 | 694..17 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-RA | 864 | CG12756-RA | 68..745 | 694..17 | 3390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5607806..5608020 | 334..548 | 1075 | 100 | Plus |
3L | 28110227 | 3L | 5607281..5607466 | 17..202 | 930 | 100 | Plus |
3L | 28110227 | 3L | 5608086..5608233 | 547..694 | 740 | 100 | Plus |
3L | 28110227 | 3L | 5607552..5607683 | 202..333 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:40:53 has no hits.
BS11419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:30 Download gff for
BS11419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-PA | 1..678 | 17..694 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:50 Download gff for
BS11419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12756-PA | 1..678 | 17..694 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:19:37 Download gff for
BS11419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..754 | 7..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:14 Download gff for
BS11419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..754 | 7..694 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:14 Download gff for
BS11419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5607272..5607465 | 7..201 | 97 | <- | Plus |
3L | 5607552..5607683 | 202..333 | 100 | <- | Plus |
3L | 5607806..5608019 | 334..547 | 100 | <- | Plus |
3L | 5608087..5608233 | 548..694 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:19:37 Download gff for
BS11419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5600652..5600783 | 202..333 | 100 | <- | Plus |
arm_3L | 5600372..5600565 | 7..201 | 97 | <- | Plus |
arm_3L | 5600906..5601119 | 334..547 | 100 | <- | Plus |
arm_3L | 5601187..5601333 | 548..694 | 100 | | Plus |
BS11419.5prime Sequence
708 bp (707 high quality bases) assembled on 2006-05-08
> BS11419.5prime
GAAGTTATCAGTCGACATGAGCTCGCCAACGAGTAAAAATGTCAGCGAAA
CGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA
GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAA
GGCCGAAACATCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCT
TCGAGGGCTCCTACCTAGAGGACACGCAGTTGTGCGGAAACATCATCCGA
GGCTGGGAGCGCTATCTGACCTCCAACAAGGCCACCAACTCCAAGGCCGA
CAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTCTCCAAGTCCA
GCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT
TCCATCACAAATGAAGACTCCAGCGACAATCAGATCTCAATCAATCAGAA
CACCACAACGGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAG
ACGAAAAGGATTCACCCTCGCATCGCAATGAGGGCAGCGTAGTGAGCGGA
ATGGTGTCTGGATCTACGAACAGTGGAGGGAACAAGGATCTCCTCGGCAC
ACCCACTTCGAATACAAAGAGCAAACTATCCACGAACTCCAGTGCGACAG
CGAAGAAAAGCGGTCACATAAACAAGAAGATTCGACATCGATGAAAGCTT
TCTAGACC
BS11419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12756-PA | 678 | Eaf6-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-RA | 864 | CG12756-RA | 68..745 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5607806..5608020 | 377..163 | 1075 | 100 | Minus |
3L | 28110227 | 3L | 5607281..5607466 | 694..509 | 930 | 100 | Minus |
3L | 28110227 | 3L | 5608086..5608233 | 164..17 | 740 | 100 | Minus |
3L | 28110227 | 3L | 5607552..5607683 | 509..378 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:32:10 has no hits.
BS11419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:31 Download gff for
BS11419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-PA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:52 Download gff for
BS11419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12756-PA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:00 Download gff for
BS11419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..754 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:25 Download gff for
BS11419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..754 | 17..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:25 Download gff for
BS11419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5607272..5607465 | 510..704 | 97 | <- | Minus |
3L | 5607552..5607683 | 378..509 | 100 | <- | Minus |
3L | 5607806..5608019 | 164..377 | 100 | <- | Minus |
3L | 5608087..5608233 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:00 Download gff for
BS11419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5600372..5600565 | 510..704 | 97 | <- | Minus |
arm_3L | 5600652..5600783 | 378..509 | 100 | <- | Minus |
arm_3L | 5600906..5601119 | 164..377 | 100 | <- | Minus |
arm_3L | 5601187..5601333 | 17..163 | 100 | | Minus |
BS11419.complete Sequence
710 bp assembled on 2006-11-01
GenBank Submission: FJ636861
> BS11419.complete
GAAGTTATCAGTCGACATGAGCTCGCCAACGAGTAAAAATGTCAGCGAAA
CGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA
GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAA
GGCCGAAACATCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCT
TCGAGGGCTCCTACCTAGAGGACACGCAGTTGTGCGGAAACATCATCCGA
GGCTGGGAGCGCTATCTGACCTCCAACAAGGCCACCAACTCCAAGGCCGA
CAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTCTCCAAGTCCA
GCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT
TCCATCACAAATGAAGACTCCAGCGACAATCAGATCTCAATCAATCAGAA
CACCACAACGGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAG
ACGAAAAGGATTCACCCTCGCATCGCAATGAGGGCAGCGTAGTGAGCGGA
ATGGTGTCTGGATCTACGAACAGTGGAGGGAACAAGGATCTCCTCGGCAC
ACCCACTTCGAATACAAAGAGCAAACTATCCACGAACTCCAGTGCGACAG
CGAAGAAAAGCGGTCACATAAACAAGAAGATTCGACATCGATGAAAGCTT
TCTAGACCAT
BS11419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-RA | 678 | CG12756-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-RA | 864 | CG12756-RA | 68..745 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5607806..5608020 | 377..163 | 1075 | 100 | Minus |
3L | 28110227 | 3L | 5607281..5607466 | 694..509 | 930 | 100 | Minus |
3L | 28110227 | 3L | 5608086..5608233 | 164..17 | 740 | 100 | Minus |
3L | 28110227 | 3L | 5607552..5607683 | 509..378 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:38:40 has no hits.
BS11419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:49 Download gff for
BS11419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:57 Download gff for
BS11419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 8..694 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:48 Download gff for
BS11419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..744 | 17..693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:49 Download gff for
BS11419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 8..694 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:24 Download gff for
BS11419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..744 | 17..693 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:24 Download gff for
BS11419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5607282..5607465 | 510..693 | 100 | <- | Minus |
3L | 5607552..5607683 | 378..509 | 100 | <- | Minus |
3L | 5607806..5608019 | 164..377 | 100 | <- | Minus |
3L | 5608087..5608233 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:48 Download gff for
BS11419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5600382..5600565 | 510..693 | 100 | <- | Minus |
arm_3L | 5600652..5600783 | 378..509 | 100 | <- | Minus |
arm_3L | 5600906..5601119 | 164..377 | 100 | <- | Minus |
arm_3L | 5601187..5601333 | 17..163 | 100 | | Minus |
BS11419.pep Sequence
Translation from 16 to 693
> BS11419.pep
MSSPTSKNVSETNGNKPKKSAKTSSNTKGGSMDTRAELADLIKKKAETSE
QLANLERQIYAFEGSYLEDTQLCGNIIRGWERYLTSNKATNSKADKRNRK
FKEAERLFSKSSITSMAICNPERASESDSITNEDSSDNQISINQNTTTAH
DGTTTIKSTPKDEKDSPSHRNEGSVVSGMVSGSTNSGGNKDLLGTPTSNT
KSKLSTNSSATAKKSGHINKKIRHR*
BS11419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-PA | 225 | CG12756-PA | 1..225 | 1..225 | 1140 | 100 | Plus |