Clone BS11419 Report

Search the DGRC for BS11419

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptEaf6-RA
Protein status:BS11419.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11419.3prime Sequence

708 bp (707 high quality bases) assembled on 2006-05-08

> BS11419.3prime
ATGGTCTAGAAAGCTTTCATCGATGTCGAATCTTCTTGTTTATGTGACCG
CTTTTCTTCGCTGTCGCACTGGAGTTCGTGGATAGTTTGCTCTTTGTATT
CGAAGTGGGTGTGCCGAGGAGATCCTTGTTCCCTCCACTGTTCGTAGATC
CAGACACCATTCCGCTCACTACGCTGCCCTCATTGCGATGCGAGGGTGAA
TCCTTTTCGTCTTTCGGTGTGCTCTTGATTGTCGTGGTTCCGTCGTGGGC
CGTTGTGGTGTTCTGATTGATTGAGATCTGATTGTCGCTGGAGTCTTCAT
TTGTGATGGAATCCGATTCGCTGGCGCGCTCAGGATTGCATATAGCCATG
GAGGTGATGCTGGACTTGGAGAACAGGCGCTCGGCCTCCTTGAACTTGCG
ATTCCGCTTGTCGGCCTTGGAGTTGGTGGCCTTGTTGGAGGTCAGATAGC
GCTCCCAGCCTCGGATGATGTTTCCGCACAACTGCGTGTCCTCTAGGTAG
GAGCCCTCGAAGGCGTAGATCTGTCGCTCCAGATTGGCCAGTTGTTCCGA
TGTTTCGGCCTTCTTCTTGATGAGGTCCGCCAACTCGGCGCGAGTGTCCA
TGGAGCCGCCTTTCGTATTCGAGCTCGTTTTGGCCGACTTCTTTGGCTTG
TTCCCGTTCGTTTCGCTGACATTTTTACTCGTTGGCGAGCTCATGTCGAC
TGATAACT

BS11419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12756-PA 678 Eaf6-RA 1..678 694..17 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-RA 864 CG12756-RA 68..745 694..17 3390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5607806..5608020 334..548 1075 100 Plus
3L 28110227 3L 5607281..5607466 17..202 930 100 Plus
3L 28110227 3L 5608086..5608233 547..694 740 100 Plus
3L 28110227 3L 5607552..5607683 202..333 660 100 Plus
Blast to na_te.dros performed on 2015-02-10 14:40:53 has no hits.

BS11419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:30 Download gff for BS11419.3prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-PA 1..678 17..694 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:50 Download gff for BS11419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12756-PA 1..678 17..694 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:19:37 Download gff for BS11419.3prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..754 7..694 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:14 Download gff for BS11419.3prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..754 7..694 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:14 Download gff for BS11419.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5607272..5607465 7..201 97 <- Plus
3L 5607552..5607683 202..333 100 <- Plus
3L 5607806..5608019 334..547 100 <- Plus
3L 5608087..5608233 548..694 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:19:37 Download gff for BS11419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5600652..5600783 202..333 100 <- Plus
arm_3L 5600372..5600565 7..201 97 <- Plus
arm_3L 5600906..5601119 334..547 100 <- Plus
arm_3L 5601187..5601333 548..694 100   Plus

BS11419.5prime Sequence

708 bp (707 high quality bases) assembled on 2006-05-08

> BS11419.5prime
GAAGTTATCAGTCGACATGAGCTCGCCAACGAGTAAAAATGTCAGCGAAA
CGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA
GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAA
GGCCGAAACATCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCT
TCGAGGGCTCCTACCTAGAGGACACGCAGTTGTGCGGAAACATCATCCGA
GGCTGGGAGCGCTATCTGACCTCCAACAAGGCCACCAACTCCAAGGCCGA
CAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTCTCCAAGTCCA
GCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT
TCCATCACAAATGAAGACTCCAGCGACAATCAGATCTCAATCAATCAGAA
CACCACAACGGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAG
ACGAAAAGGATTCACCCTCGCATCGCAATGAGGGCAGCGTAGTGAGCGGA
ATGGTGTCTGGATCTACGAACAGTGGAGGGAACAAGGATCTCCTCGGCAC
ACCCACTTCGAATACAAAGAGCAAACTATCCACGAACTCCAGTGCGACAG
CGAAGAAAAGCGGTCACATAAACAAGAAGATTCGACATCGATGAAAGCTT
TCTAGACC

BS11419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12756-PA 678 Eaf6-RA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-RA 864 CG12756-RA 68..745 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5607806..5608020 377..163 1075 100 Minus
3L 28110227 3L 5607281..5607466 694..509 930 100 Minus
3L 28110227 3L 5608086..5608233 164..17 740 100 Minus
3L 28110227 3L 5607552..5607683 509..378 660 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:32:10 has no hits.

BS11419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:31 Download gff for BS11419.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-PA 1..678 17..694 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:38:52 Download gff for BS11419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12756-PA 1..678 17..694 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:00 Download gff for BS11419.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..754 17..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:25 Download gff for BS11419.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..754 17..704 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:25 Download gff for BS11419.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5607272..5607465 510..704 97 <- Minus
3L 5607552..5607683 378..509 100 <- Minus
3L 5607806..5608019 164..377 100 <- Minus
3L 5608087..5608233 17..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:00 Download gff for BS11419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5600372..5600565 510..704 97 <- Minus
arm_3L 5600652..5600783 378..509 100 <- Minus
arm_3L 5600906..5601119 164..377 100 <- Minus
arm_3L 5601187..5601333 17..163 100   Minus

BS11419.complete Sequence

710 bp assembled on 2006-11-01

GenBank Submission: FJ636861

> BS11419.complete
GAAGTTATCAGTCGACATGAGCTCGCCAACGAGTAAAAATGTCAGCGAAA
CGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA
GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAA
GGCCGAAACATCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCT
TCGAGGGCTCCTACCTAGAGGACACGCAGTTGTGCGGAAACATCATCCGA
GGCTGGGAGCGCTATCTGACCTCCAACAAGGCCACCAACTCCAAGGCCGA
CAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTCTCCAAGTCCA
GCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT
TCCATCACAAATGAAGACTCCAGCGACAATCAGATCTCAATCAATCAGAA
CACCACAACGGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAG
ACGAAAAGGATTCACCCTCGCATCGCAATGAGGGCAGCGTAGTGAGCGGA
ATGGTGTCTGGATCTACGAACAGTGGAGGGAACAAGGATCTCCTCGGCAC
ACCCACTTCGAATACAAAGAGCAAACTATCCACGAACTCCAGTGCGACAG
CGAAGAAAAGCGGTCACATAAACAAGAAGATTCGACATCGATGAAAGCTT
TCTAGACCAT

BS11419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-RA 678 CG12756-PA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-RA 864 CG12756-RA 68..745 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5607806..5608020 377..163 1075 100 Minus
3L 28110227 3L 5607281..5607466 694..509 930 100 Minus
3L 28110227 3L 5608086..5608233 164..17 740 100 Minus
3L 28110227 3L 5607552..5607683 509..378 660 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:38:40 has no hits.

BS11419.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:49 Download gff for BS11419.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 1..678 17..694 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:57 Download gff for BS11419.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 8..694 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:48 Download gff for BS11419.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..744 17..693 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:49 Download gff for BS11419.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 8..694 17..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:24 Download gff for BS11419.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..744 17..693 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:24 Download gff for BS11419.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5607282..5607465 510..693 100 <- Minus
3L 5607552..5607683 378..509 100 <- Minus
3L 5607806..5608019 164..377 100 <- Minus
3L 5608087..5608233 17..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:48 Download gff for BS11419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5600382..5600565 510..693 100 <- Minus
arm_3L 5600652..5600783 378..509 100 <- Minus
arm_3L 5600906..5601119 164..377 100 <- Minus
arm_3L 5601187..5601333 17..163 100   Minus

BS11419.pep Sequence

Translation from 16 to 693

> BS11419.pep
MSSPTSKNVSETNGNKPKKSAKTSSNTKGGSMDTRAELADLIKKKAETSE
QLANLERQIYAFEGSYLEDTQLCGNIIRGWERYLTSNKATNSKADKRNRK
FKEAERLFSKSSITSMAICNPERASESDSITNEDSSDNQISINQNTTTAH
DGTTTIKSTPKDEKDSPSHRNEGSVVSGMVSGSTNSGGNKDLLGTPTSNT
KSKLSTNSSATAKKSGHINKKIRHR*

BS11419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-PA 225 CG12756-PA 1..225 1..225 1140 100 Plus