Clone BS11424 Report

Search the DGRC for BS11424

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG12268-RA
Protein status:BS11424.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11424.3prime Sequence

900 bp (822 high quality bases) assembled on 2006-05-08

> BS11424.3prime
ATGGTCTAGAAAGCTTTTATACATGTATGGTGCTGTTTCGCTCATGGTAA
ATGGTGCTGAGCGAGGATCGGATGAAGGCATCGCTCCGTTCCACGAAGCC
ATCCAAATGGGTCCACAGGAACCAGAAGCTCAGGGAGAAAAACAGCACTT
TGCTGACCCAGTCGAGGATATACAGCCGTCGCAGGACCTTCCTGGCCTGC
GGCAGAGTGTCCTCGCTCTCGCCCAGTATATAGGTGCGCATGCCCACAAT
GTAGTTACTGATGTATGTCTCCCAATTGACCTGACCCACCGACGTGTCGA
AGAGGTCCTGATCCAGGAGGCTCAGCTGACTGCTCATCTCCTGGAAGCGC
TCGTTTCGGAACTCCCACCTTTTCGTTGTGTAGTACTGCAGCAGCTTCAG
ACCCATGGACACTTTGCGTTGGACATTGAGTAAGAATGGCTTTTGGCCAA
AGACGAGCAGCCAAAAGTCGATGAAGTATGCGGGCAGATAGTGGAAGAAG
ATGACGCAGAAAAGGTGGTGGTAGTAGTTCTTTTTGATGGATCCACCCGG
ATACCAGAGCGCAAAGCTGAGCGGCGTTTCGTAGAAGAATCGACGACCCG
TCTCGATGCTGTCGCCCCAGGACATCAGCGCCTTGCTGGAGATGCACAGA
TTGCAGAACTCAACACCCGTCTGCTTGTTACCCTTCTCCTGGCTGGCCTT
TCCGCGCTGATAGCCGCACAGGATCATGCCGTTAATGGCCTTGTCTACGG
GTATCACCGTGGAGGCGTAGTCCGGATTGCAGTGCATCGATCGGATGACT
CCGCGGGCGGCGCCGATCATTAGGCCGGTGGGTCCATTGACGCCCTCGAT
CCAGCCGGGCAATGGCTCGTGAATGGCGGCCGTCACGATCGAGGGCCTTG

BS11424.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12268-PA 1596 CG12268-RA 713..1596 900..17 4420 100 Minus
CG12268-PB 1596 CG12268-RB 713..1596 900..17 4420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12268-RC 1864 CG12268-RC 920..1804 900..16 4425 100 Minus
CG12268-RB 1757 CG12268-RB 813..1697 900..16 4425 100 Minus
CG12268-RA 1775 CG12268-RA 831..1715 900..16 4425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23944165..23944616 435..886 2260 100 Plus
3R 32079331 3R 23943688..23944106 16..434 2095 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:26:39 has no hits.

BS11424.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:41 Download gff for BS11424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12268-PA 713..1596 17..900 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:05 Download gff for BS11424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12268-PB 713..1596 17..900 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:56 Download gff for BS11424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12268-RA 831..1722 8..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:14 Download gff for BS11424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12268-RA 831..1722 8..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:14 Download gff for BS11424.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23943681..23944106 8..434 99 <- Plus
3R 23944165..23944615 435..885 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:56 Download gff for BS11424.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19769403..19769828 8..434 99 <- Plus
arm_3R 19769887..19770337 435..885 100 <- Plus

BS11424.5prime Sequence

890 bp (848 high quality bases) assembled on 2006-05-08

> BS11424.5prime
GAAGTTATCAGTCGACATGGACATACTGAGGAGCGATGCCGATTGCGGCG
AGTCCGATATTGCCAAGTTCTATGCAAACAAAACCATCCTTATTACGGGT
GCCACCGGATTTATGGGCAAGGTTCTGGTGGAGAAACTACTGCGTAGCTG
TGCCGACCTGAACGTCATATATCTATTGATACGCACCAAAAAAGGGGTCG
ATCCCAGTGTGCGCAAGGAGCAGTACTTCAAGTGTGTGATCTTTGGCAAG
CTGCTGGAGAAGAATCCCGGCATCGTGGACAAGGTGCGCGTGGTAAAGGG
CGATCTGCTGGAGCCGGACCTTGGCCTGAGCGCCAATGACACCAACACAC
TCGCCTCCAACGTCGAGGTGGTCTTCCACTGTGCGGCCAATGTGCGCTTC
GACCAGCCGCTGCGTCCCATGGTCATGATGAACGTGGTGGGCACCCTGAA
GGTCCTCCGCCTCGCTGAGAAGATGAGCCAGCTGCAGGCTCTGGTCCACG
TGTCCACCTCATACTGCCAGTGCAACGAGAGCGTTCTGGAGGAGCGAGCC
TACCCGGCTCCACAGAACCCCTTCTCCATCATCGAAATGGTGGAGACGAT
GGACGACGAAGCTCTGGCGGAGATTACACCCAAATTACTAAACGGCTTGC
CAAACACGTACGCTTACAGCAAGGCGCTGTCGGAAGATTTAATTTGCAGA
TACAACAATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGTGACGGC
CGCCATTCACGAGCCATTGCCCGGCTGGATCGAGGGCGTCAATGGACCCA
CCGGCCTAATGATCGGCGCCGCCCGCGGAGTCATCCGATCGATGCACTGC
AATCCGGACTACGCCTCCACGGTGATACCCGTAGACAAGG

BS11424.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12268-PA 1596 CG12268-RA 1..874 17..890 4370 100 Plus
CG12268-PB 1596 CG12268-RB 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12268-RC 1864 CG12268-RC 207..1081 16..890 4375 100 Plus
CG12268-RB 1757 CG12268-RB 100..974 16..890 4375 100 Plus
CG12268-RA 1775 CG12268-RA 118..992 16..890 4375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23945017..23945412 633..238 1980 100 Minus
3R 32079331 3R 23946609..23946831 238..16 1115 100 Minus
3R 32079331 3R 23944469..23944616 890..743 740 100 Minus
3R 32079331 3R 23944685..23944794 743..634 550 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:07:43 has no hits.

BS11424.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:42 Download gff for BS11424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12268-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:06 Download gff for BS11424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12268-PB 1..874 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:16:12 Download gff for BS11424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12268-RA 118..992 16..890 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:46:20 Download gff for BS11424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12268-RA 118..992 16..890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:46:20 Download gff for BS11424.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23944685..23944794 634..743 100 <- Minus
3R 23944469..23944615 744..890 100 <- Minus
3R 23945017..23945411 239..633 100 <- Minus
3R 23946609..23946831 16..238 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:16:12 Download gff for BS11424.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19770191..19770337 744..890 100 <- Minus
arm_3R 19770407..19770516 634..743 100 <- Minus
arm_3R 19770739..19771133 239..633 100 <- Minus
arm_3R 19772331..19772553 16..238 100   Minus

BS11424.complete Sequence

1628 bp assembled on 2006-11-01

GenBank Submission: FJ636862

> BS11424.complete
GAAGTTATCAGTCGACATGGACATACTGAGGAGCGATGCCGATTGCGGCG
AGTCCGATATTGCCAAGTTCTATGCAAACAAAACCATCCTTATTACGGGT
GCCACCGGATTTATGGGCAAGGTTCTGGTGGAGAAACTACTGCGTAGCTG
TGCCGACCTGAACGTCATATATCTATTGATACGCACCAAAAAAGGGGTCG
ATCCCAGTGTGCGCAAGGAGCAGTACTTCAAGTGTGTGATCTTTGGCAAG
CTGCTGGAGAAGAATCCCGGCATCGTGGACAAGGTGCGCGTGGTAAAGGG
CGATCTGCTGGAGCCGGACCTTGGCCTGAGCGCCAATGACACCAACACAC
TCGCCTCCAACGTCGAGGTGGTCTTCCACTGTGCGGCCAATGTGCGCTTC
GACCAGCCGCTGCGTCCCATGGTCATGATGAACGTGGTGGGCACCCTGAA
GGTCCTCCGCCTCGCTGAGAAGATGAGCCAGCTGCAGGCTCTGGTCCACG
TGTCCACCTCATACTGCCAGTGCAACGAGAGCGTTCTGGAGGAGCGAGCC
TACCCGGCTCCACAGAACCCCTTCTCCATCATCGAAATGGTGGAGACGAT
GGACGACGAAGCTCTGGCGGAGATTACACCCAAATTACTAAACGGCTTGC
CAAACACGTACGCTTACAGCAAGGCGCTGTCGGAAGATTTAATTTGCAGA
TACAACAATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGTGACGGC
CGCCATTCACGAGCCATTGCCCGGCTGGATCGAGGGCGTCAATGGACCCA
CCGGCCTAATGATCGGCGCCGCCCGCGGAGTCATCCGATCGATGCACTGC
AATCCGGACTACGCCTCCACGGTGATACCCGTAGACAAGGCCATTAACGG
CATGATCCTGTGCGGCTATCAGCGCGGAAAGGCCAGCCAGGAGAAGGGTA
ACAAGCAGACGGGTGTTGAGTTCTGCAATCTGTGCATCTCCAGCAAGGCG
CTGATGTCCTGGGGCGACAGCATCGAGACGGGTCGTCGATTCTTCTACGA
AACGCCGCTCAGCTTTGCGCTCTGGTATCCGGGTGGATCCATCAAAAAGA
ACTACTACCACCACCTTTTCTGCGTCATCTTCTTCCACTATCTGCCCGCA
TACTTCATCGACTTTTGGCTGCTCGTCTTTGGCCAAAAGCCATTCTTACT
CAATGTCCAACGCAAAGTGTCCATGGGTCTGAAGCTGCTGCAGTACTACA
CAACGAAAAGGTGGGAGTTCCGAAACGAGCGCTTCCAGGAGATGAGCAGT
CAGCTGAGCCTCCTGGATCAGGACCTCTTCGACACGTCGGTGGGTCAGGT
CAATTGGGAGACATACATCAGTAACTACATTGTGGGCATGCGCACCTATA
TACTGGGCGAGAGCGAGGACACTCTGCCGCAGGCCAGGAAGGTCCTGCGA
CGGCTGTATATCCTCGACTGGGTCAGCAAAGTGCTGTTTTTCTCCCTGAG
CTTCTGGTTCCTGTGGACCCATTTGGATGGCTTCGTGGAACGGAGCGATG
CCTTCATCCGATCCTCGCTCAGCACCATTTACCATGAGCGAAACAGCACC
ATACATGTATAAAAGCTTTCTAGACCAT

BS11424.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12268-RC 1596 CG12268-PC 1..1596 17..1612 7980 100 Plus
CG12268-RB 1596 CG12268-PB 1..1596 17..1612 7980 100 Plus
CG12268-RA 1596 CG12268-PA 1..1596 17..1612 7980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12268-RC 1864 CG12268-RC 207..1804 16..1613 7990 100 Plus
CG12268-RB 1757 CG12268-RB 100..1697 16..1613 7990 100 Plus
CG12268-RA 1775 CG12268-RA 118..1715 16..1613 7990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23944165..23944616 1194..743 2260 100 Minus
3R 32079331 3R 23943688..23944106 1613..1195 2095 100 Minus
3R 32079331 3R 23945017..23945412 633..238 1980 100 Minus
3R 32079331 3R 23946609..23946831 238..16 1115 100 Minus
3R 32079331 3R 23944685..23944794 743..634 550 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:25:46 has no hits.

BS11424.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:51 Download gff for BS11424.complete
Subject Subject Range Query Range Percent Splice Strand
CG12268-RB 1..1596 17..1612 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:59 Download gff for BS11424.complete
Subject Subject Range Query Range Percent Splice Strand
CG12268-RB 95..1699 16..1621 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:43 Download gff for BS11424.complete
Subject Subject Range Query Range Percent Splice Strand
CG12268-RA 119..1712 17..1610 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:51 Download gff for BS11424.complete
Subject Subject Range Query Range Percent Splice Strand
CG12268-RB 95..1699 16..1621 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:53 Download gff for BS11424.complete
Subject Subject Range Query Range Percent Splice Strand
CG12268-RA 119..1712 17..1610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:53 Download gff for BS11424.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23943691..23944106 1195..1610 100 <- Minus
3R 23944165..23944615 744..1194 100 <- Minus
3R 23944685..23944794 634..743 100 <- Minus
3R 23945017..23945411 239..633 100 <- Minus
3R 23946609..23946830 17..238 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:43 Download gff for BS11424.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19769413..19769828 1195..1610 100 <- Minus
arm_3R 19769887..19770337 744..1194 100 <- Minus
arm_3R 19770407..19770516 634..743 100 <- Minus
arm_3R 19770739..19771133 239..633 100 <- Minus
arm_3R 19772331..19772552 17..238 100   Minus

BS11424.pep Sequence

Translation from 16 to 1611

> BS11424.pep
MDILRSDADCGESDIAKFYANKTILITGATGFMGKVLVEKLLRSCADLNV
IYLLIRTKKGVDPSVRKEQYFKCVIFGKLLEKNPGIVDKVRVVKGDLLEP
DLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMMNVVGTLKVLRLA
EKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDEAL
AEITPKLLNGLPNTYAYSKALSEDLICRYNNKLPIIITRPSIVTAAIHEP
LPGWIEGVNGPTGLMIGAARGVIRSMHCNPDYASTVIPVDKAINGMILCG
YQRGKASQEKGNKQTGVEFCNLCISSKALMSWGDSIETGRRFFYETPLSF
ALWYPGGSIKKNYYHHLFCVIFFHYLPAYFIDFWLLVFGQKPFLLNVQRK
VSMGLKLLQYYTTKRWEFRNERFQEMSSQLSLLDQDLFDTSVGQVNWETY
ISNYIVGMRTYILGESEDTLPQARKVLRRLYILDWVSKVLFFSLSFWFLW
THLDGFVERSDAFIRSSLSTIYHERNSTIHV*

BS11424.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12268-PC 531 CG12268-PC 1..531 1..531 2785 100 Plus
CG12268-PB 531 CG12268-PB 1..531 1..531 2785 100 Plus
CG12268-PA 531 CG12268-PA 1..531 1..531 2785 100 Plus
CG30427-PG 506 CG30427-PG 6..487 13..497 1034 40.3 Plus
CG30427-PC 506 CG30427-PC 6..487 13..497 1034 40.3 Plus