Clone Sequence Records
BS11424.3prime Sequence
900 bp (822 high quality bases) assembled on 2006-05-08
> BS11424.3prime
ATGGTCTAGAAAGCTTTTATACATGTATGGTGCTGTTTCGCTCATGGTAA
ATGGTGCTGAGCGAGGATCGGATGAAGGCATCGCTCCGTTCCACGAAGCC
ATCCAAATGGGTCCACAGGAACCAGAAGCTCAGGGAGAAAAACAGCACTT
TGCTGACCCAGTCGAGGATATACAGCCGTCGCAGGACCTTCCTGGCCTGC
GGCAGAGTGTCCTCGCTCTCGCCCAGTATATAGGTGCGCATGCCCACAAT
GTAGTTACTGATGTATGTCTCCCAATTGACCTGACCCACCGACGTGTCGA
AGAGGTCCTGATCCAGGAGGCTCAGCTGACTGCTCATCTCCTGGAAGCGC
TCGTTTCGGAACTCCCACCTTTTCGTTGTGTAGTACTGCAGCAGCTTCAG
ACCCATGGACACTTTGCGTTGGACATTGAGTAAGAATGGCTTTTGGCCAA
AGACGAGCAGCCAAAAGTCGATGAAGTATGCGGGCAGATAGTGGAAGAAG
ATGACGCAGAAAAGGTGGTGGTAGTAGTTCTTTTTGATGGATCCACCCGG
ATACCAGAGCGCAAAGCTGAGCGGCGTTTCGTAGAAGAATCGACGACCCG
TCTCGATGCTGTCGCCCCAGGACATCAGCGCCTTGCTGGAGATGCACAGA
TTGCAGAACTCAACACCCGTCTGCTTGTTACCCTTCTCCTGGCTGGCCTT
TCCGCGCTGATAGCCGCACAGGATCATGCCGTTAATGGCCTTGTCTACGG
GTATCACCGTGGAGGCGTAGTCCGGATTGCAGTGCATCGATCGGATGACT
CCGCGGGCGGCGCCGATCATTAGGCCGGTGGGTCCATTGACGCCCTCGAT
CCAGCCGGGCAATGGCTCGTGAATGGCGGCCGTCACGATCGAGGGCCTTG
BS11424.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12268-PA | 1596 | CG12268-RA | 713..1596 | 900..17 | 4420 | 100 | Minus |
CG12268-PB | 1596 | CG12268-RB | 713..1596 | 900..17 | 4420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12268-RC | 1864 | CG12268-RC | 920..1804 | 900..16 | 4425 | 100 | Minus |
CG12268-RB | 1757 | CG12268-RB | 813..1697 | 900..16 | 4425 | 100 | Minus |
CG12268-RA | 1775 | CG12268-RA | 831..1715 | 900..16 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23944165..23944616 | 435..886 | 2260 | 100 | Plus |
3R | 32079331 | 3R | 23943688..23944106 | 16..434 | 2095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:26:39 has no hits.
BS11424.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:41 Download gff for
BS11424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-PA | 713..1596 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:05 Download gff for
BS11424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-PB | 713..1596 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:56 Download gff for
BS11424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-RA | 831..1722 | 8..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:14 Download gff for
BS11424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-RA | 831..1722 | 8..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:14 Download gff for
BS11424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23943681..23944106 | 8..434 | 99 | <- | Plus |
3R | 23944165..23944615 | 435..885 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:56 Download gff for
BS11424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19769403..19769828 | 8..434 | 99 | <- | Plus |
arm_3R | 19769887..19770337 | 435..885 | 100 | <- | Plus |
BS11424.5prime Sequence
890 bp (848 high quality bases) assembled on 2006-05-08
> BS11424.5prime
GAAGTTATCAGTCGACATGGACATACTGAGGAGCGATGCCGATTGCGGCG
AGTCCGATATTGCCAAGTTCTATGCAAACAAAACCATCCTTATTACGGGT
GCCACCGGATTTATGGGCAAGGTTCTGGTGGAGAAACTACTGCGTAGCTG
TGCCGACCTGAACGTCATATATCTATTGATACGCACCAAAAAAGGGGTCG
ATCCCAGTGTGCGCAAGGAGCAGTACTTCAAGTGTGTGATCTTTGGCAAG
CTGCTGGAGAAGAATCCCGGCATCGTGGACAAGGTGCGCGTGGTAAAGGG
CGATCTGCTGGAGCCGGACCTTGGCCTGAGCGCCAATGACACCAACACAC
TCGCCTCCAACGTCGAGGTGGTCTTCCACTGTGCGGCCAATGTGCGCTTC
GACCAGCCGCTGCGTCCCATGGTCATGATGAACGTGGTGGGCACCCTGAA
GGTCCTCCGCCTCGCTGAGAAGATGAGCCAGCTGCAGGCTCTGGTCCACG
TGTCCACCTCATACTGCCAGTGCAACGAGAGCGTTCTGGAGGAGCGAGCC
TACCCGGCTCCACAGAACCCCTTCTCCATCATCGAAATGGTGGAGACGAT
GGACGACGAAGCTCTGGCGGAGATTACACCCAAATTACTAAACGGCTTGC
CAAACACGTACGCTTACAGCAAGGCGCTGTCGGAAGATTTAATTTGCAGA
TACAACAATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGTGACGGC
CGCCATTCACGAGCCATTGCCCGGCTGGATCGAGGGCGTCAATGGACCCA
CCGGCCTAATGATCGGCGCCGCCCGCGGAGTCATCCGATCGATGCACTGC
AATCCGGACTACGCCTCCACGGTGATACCCGTAGACAAGG
BS11424.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12268-PA | 1596 | CG12268-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
CG12268-PB | 1596 | CG12268-RB | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12268-RC | 1864 | CG12268-RC | 207..1081 | 16..890 | 4375 | 100 | Plus |
CG12268-RB | 1757 | CG12268-RB | 100..974 | 16..890 | 4375 | 100 | Plus |
CG12268-RA | 1775 | CG12268-RA | 118..992 | 16..890 | 4375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23945017..23945412 | 633..238 | 1980 | 100 | Minus |
3R | 32079331 | 3R | 23946609..23946831 | 238..16 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 23944469..23944616 | 890..743 | 740 | 100 | Minus |
3R | 32079331 | 3R | 23944685..23944794 | 743..634 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:07:43 has no hits.
BS11424.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:42 Download gff for
BS11424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:06 Download gff for
BS11424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-PB | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:16:12 Download gff for
BS11424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-RA | 118..992 | 16..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:46:20 Download gff for
BS11424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-RA | 118..992 | 16..890 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:46:20 Download gff for
BS11424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23944685..23944794 | 634..743 | 100 | <- | Minus |
3R | 23944469..23944615 | 744..890 | 100 | <- | Minus |
3R | 23945017..23945411 | 239..633 | 100 | <- | Minus |
3R | 23946609..23946831 | 16..238 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:16:12 Download gff for
BS11424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19770191..19770337 | 744..890 | 100 | <- | Minus |
arm_3R | 19770407..19770516 | 634..743 | 100 | <- | Minus |
arm_3R | 19770739..19771133 | 239..633 | 100 | <- | Minus |
arm_3R | 19772331..19772553 | 16..238 | 100 | | Minus |
BS11424.complete Sequence
1628 bp assembled on 2006-11-01
GenBank Submission: FJ636862
> BS11424.complete
GAAGTTATCAGTCGACATGGACATACTGAGGAGCGATGCCGATTGCGGCG
AGTCCGATATTGCCAAGTTCTATGCAAACAAAACCATCCTTATTACGGGT
GCCACCGGATTTATGGGCAAGGTTCTGGTGGAGAAACTACTGCGTAGCTG
TGCCGACCTGAACGTCATATATCTATTGATACGCACCAAAAAAGGGGTCG
ATCCCAGTGTGCGCAAGGAGCAGTACTTCAAGTGTGTGATCTTTGGCAAG
CTGCTGGAGAAGAATCCCGGCATCGTGGACAAGGTGCGCGTGGTAAAGGG
CGATCTGCTGGAGCCGGACCTTGGCCTGAGCGCCAATGACACCAACACAC
TCGCCTCCAACGTCGAGGTGGTCTTCCACTGTGCGGCCAATGTGCGCTTC
GACCAGCCGCTGCGTCCCATGGTCATGATGAACGTGGTGGGCACCCTGAA
GGTCCTCCGCCTCGCTGAGAAGATGAGCCAGCTGCAGGCTCTGGTCCACG
TGTCCACCTCATACTGCCAGTGCAACGAGAGCGTTCTGGAGGAGCGAGCC
TACCCGGCTCCACAGAACCCCTTCTCCATCATCGAAATGGTGGAGACGAT
GGACGACGAAGCTCTGGCGGAGATTACACCCAAATTACTAAACGGCTTGC
CAAACACGTACGCTTACAGCAAGGCGCTGTCGGAAGATTTAATTTGCAGA
TACAACAATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGTGACGGC
CGCCATTCACGAGCCATTGCCCGGCTGGATCGAGGGCGTCAATGGACCCA
CCGGCCTAATGATCGGCGCCGCCCGCGGAGTCATCCGATCGATGCACTGC
AATCCGGACTACGCCTCCACGGTGATACCCGTAGACAAGGCCATTAACGG
CATGATCCTGTGCGGCTATCAGCGCGGAAAGGCCAGCCAGGAGAAGGGTA
ACAAGCAGACGGGTGTTGAGTTCTGCAATCTGTGCATCTCCAGCAAGGCG
CTGATGTCCTGGGGCGACAGCATCGAGACGGGTCGTCGATTCTTCTACGA
AACGCCGCTCAGCTTTGCGCTCTGGTATCCGGGTGGATCCATCAAAAAGA
ACTACTACCACCACCTTTTCTGCGTCATCTTCTTCCACTATCTGCCCGCA
TACTTCATCGACTTTTGGCTGCTCGTCTTTGGCCAAAAGCCATTCTTACT
CAATGTCCAACGCAAAGTGTCCATGGGTCTGAAGCTGCTGCAGTACTACA
CAACGAAAAGGTGGGAGTTCCGAAACGAGCGCTTCCAGGAGATGAGCAGT
CAGCTGAGCCTCCTGGATCAGGACCTCTTCGACACGTCGGTGGGTCAGGT
CAATTGGGAGACATACATCAGTAACTACATTGTGGGCATGCGCACCTATA
TACTGGGCGAGAGCGAGGACACTCTGCCGCAGGCCAGGAAGGTCCTGCGA
CGGCTGTATATCCTCGACTGGGTCAGCAAAGTGCTGTTTTTCTCCCTGAG
CTTCTGGTTCCTGTGGACCCATTTGGATGGCTTCGTGGAACGGAGCGATG
CCTTCATCCGATCCTCGCTCAGCACCATTTACCATGAGCGAAACAGCACC
ATACATGTATAAAAGCTTTCTAGACCAT
BS11424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12268-RC | 1596 | CG12268-PC | 1..1596 | 17..1612 | 7980 | 100 | Plus |
CG12268-RB | 1596 | CG12268-PB | 1..1596 | 17..1612 | 7980 | 100 | Plus |
CG12268-RA | 1596 | CG12268-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12268-RC | 1864 | CG12268-RC | 207..1804 | 16..1613 | 7990 | 100 | Plus |
CG12268-RB | 1757 | CG12268-RB | 100..1697 | 16..1613 | 7990 | 100 | Plus |
CG12268-RA | 1775 | CG12268-RA | 118..1715 | 16..1613 | 7990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23944165..23944616 | 1194..743 | 2260 | 100 | Minus |
3R | 32079331 | 3R | 23943688..23944106 | 1613..1195 | 2095 | 100 | Minus |
3R | 32079331 | 3R | 23945017..23945412 | 633..238 | 1980 | 100 | Minus |
3R | 32079331 | 3R | 23946609..23946831 | 238..16 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 23944685..23944794 | 743..634 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:25:46 has no hits.
BS11424.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:51 Download gff for
BS11424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-RB | 1..1596 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:59 Download gff for
BS11424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-RB | 95..1699 | 16..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:43 Download gff for
BS11424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-RA | 119..1712 | 17..1610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:51 Download gff for
BS11424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-RB | 95..1699 | 16..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:53 Download gff for
BS11424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12268-RA | 119..1712 | 17..1610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:53 Download gff for
BS11424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23943691..23944106 | 1195..1610 | 100 | <- | Minus |
3R | 23944165..23944615 | 744..1194 | 100 | <- | Minus |
3R | 23944685..23944794 | 634..743 | 100 | <- | Minus |
3R | 23945017..23945411 | 239..633 | 100 | <- | Minus |
3R | 23946609..23946830 | 17..238 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:43 Download gff for
BS11424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19769413..19769828 | 1195..1610 | 100 | <- | Minus |
arm_3R | 19769887..19770337 | 744..1194 | 100 | <- | Minus |
arm_3R | 19770407..19770516 | 634..743 | 100 | <- | Minus |
arm_3R | 19770739..19771133 | 239..633 | 100 | <- | Minus |
arm_3R | 19772331..19772552 | 17..238 | 100 | | Minus |
BS11424.pep Sequence
Translation from 16 to 1611
> BS11424.pep
MDILRSDADCGESDIAKFYANKTILITGATGFMGKVLVEKLLRSCADLNV
IYLLIRTKKGVDPSVRKEQYFKCVIFGKLLEKNPGIVDKVRVVKGDLLEP
DLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMMNVVGTLKVLRLA
EKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDEAL
AEITPKLLNGLPNTYAYSKALSEDLICRYNNKLPIIITRPSIVTAAIHEP
LPGWIEGVNGPTGLMIGAARGVIRSMHCNPDYASTVIPVDKAINGMILCG
YQRGKASQEKGNKQTGVEFCNLCISSKALMSWGDSIETGRRFFYETPLSF
ALWYPGGSIKKNYYHHLFCVIFFHYLPAYFIDFWLLVFGQKPFLLNVQRK
VSMGLKLLQYYTTKRWEFRNERFQEMSSQLSLLDQDLFDTSVGQVNWETY
ISNYIVGMRTYILGESEDTLPQARKVLRRLYILDWVSKVLFFSLSFWFLW
THLDGFVERSDAFIRSSLSTIYHERNSTIHV*
BS11424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12268-PC | 531 | CG12268-PC | 1..531 | 1..531 | 2785 | 100 | Plus |
CG12268-PB | 531 | CG12268-PB | 1..531 | 1..531 | 2785 | 100 | Plus |
CG12268-PA | 531 | CG12268-PA | 1..531 | 1..531 | 2785 | 100 | Plus |
CG30427-PG | 506 | CG30427-PG | 6..487 | 13..497 | 1034 | 40.3 | Plus |
CG30427-PC | 506 | CG30427-PC | 6..487 | 13..497 | 1034 | 40.3 | Plus |