Clone BS11427 Report

Search the DGRC for BS11427

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCCHa2-RA
Protein status:BS11427.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11427.5prime Sequence

441 bp (440 high quality bases) assembled on 2006-05-08

> BS11427.5prime
GAAGTTATCAGTCGACATGAAATCCACCATATCTTTGCTACTGGTCGTTA
TCTGCACCGTGGTCCTGGCCGCGCAACAGAGCCAAGCGAAAAAGGGATGC
CAGGCCTACGGTCATGTGTGCTACGGTGGTCATGGCAAGCGCTCTCTGAG
CCCCGGATCCGGGTCTGGAACGGGAGTGGGCGGGGGAATGGGCGAGGCAG
CCTCCGGGGGGCAGGAACCGGACTATGTGCGTCCGAATGGCCTACTGCCC
ATGATGGCGCCAAATGAACAGGTGCCGCTCGAGGGCGACTTTAATGACTA
TCCCGCCCGTCAGGTGCTTTACAAAATCATGAAATCATGGTTTAACCGAC
CTCGCCGACCCGCCTCTCGCCTGGGTGAACTTGATTATCCCTTGGCCAAT
TCCGCCGAATTGAATGGCGTGAACTAAAAGCTTTCTAGACC

BS11427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14375-PA 411 CG14375-RA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-RC 1322 CG14375-RC 297..708 16..427 2060 100 Plus
CCHa2-RB 1281 CG14375-RB 256..667 16..427 2060 100 Plus
CCHa2-RA 1167 CG14375-RA 142..553 16..427 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13390048..13390295 340..93 1240 100 Minus
3R 32079331 3R 13389673..13389760 427..340 440 100 Minus
3R 32079331 3R 13391865..13391941 92..16 385 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:49:32 has no hits.

BS11427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:49 Download gff for BS11427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14375-PA 1..411 17..427 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:15 Download gff for BS11427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14375-PA 1..411 17..427 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:23 Download gff for BS11427.5prime
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 137..556 10..431 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:41 Download gff for BS11427.5prime
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 137..556 10..431 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:41 Download gff for BS11427.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13389670..13389759 341..431 97 <- Minus
3R 13390048..13390295 93..340 100 <- Minus
3R 13391865..13391945 11..92 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:23 Download gff for BS11427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9215392..9215481 341..431 97 <- Minus
arm_3R 9215770..9216017 93..340 100 <- Minus
arm_3R 9217587..9217667 11..92 96   Minus

BS11427.3prime Sequence

441 bp (440 high quality bases) assembled on 2006-05-08

> BS11427.3prime
ATGGTCTAGAAAGCTTTTAGTTCACGCCATTCAATTCGGCGGAATTGGCC
AAGGGATAATCAAGTTCACCCAGGCGAGAGGCGGGTCGGCGAGGTCGGTT
AAACCATGATTTCATGATTTTGTAAAGCACCTGACGGGCGGGATAGTCAT
TAAAGTCGCCCTCGAGCGGCACCTGTTCATTTGGCGCCATCATGGGCAGT
AGGCCATTCGGACGCACATAGTCCGGTTCCTGCCCCCCGGAGGCTGCCTC
GCCCATTCCCCCGCCCACTCCCGTTCCAGACCCGGATCCGGGGCTCAGAG
AGCGCTTGCCATGACCACCGTAGCACACATGACCGTAGGCCTGGCATCCC
TTTTTCGCTTGGCTCTGTTGCGCGGCCAGGACCACGGTGCAGATAACGAC
CAGTAGCAAAGATATGGTGGATTTCATGTCGACTGATAACT

BS11427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14375-PA 411 CG14375-RA 1..411 427..17 2055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-RC 1322 CG14375-RC 297..708 428..17 2060 100 Minus
CCHa2-RB 1281 CG14375-RB 256..667 428..17 2060 100 Minus
CCHa2-RA 1167 CG14375-RA 142..553 428..17 2060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13390048..13390295 104..351 1240 100 Plus
3R 32079331 3R 13389673..13389760 17..104 440 100 Plus
3R 32079331 3R 13391865..13391941 352..428 385 100 Plus
Blast to na_te.dros performed on 2015-02-02 20:25:29 has no hits.

BS11427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:47 Download gff for BS11427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14375-PA 1..411 17..427 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:14 Download gff for BS11427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14375-PA 1..411 17..427 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:24:46 Download gff for BS11427.3prime
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 137..556 13..434 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:34 Download gff for BS11427.3prime
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 137..556 13..434 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:34 Download gff for BS11427.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13389670..13389759 13..103 97 <- Plus
3R 13390048..13390295 104..351 100 <- Plus
3R 13391865..13391945 352..433 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:24:46 Download gff for BS11427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9215392..9215481 13..103 97 <- Plus
arm_3R 9215770..9216017 104..351 100 <- Plus
arm_3R 9217587..9217667 352..433 96   Plus

BS11427.complete Sequence

443 bp assembled on 2006-11-01

GenBank Submission: FJ636863

> BS11427.complete
GAAGTTATCAGTCGACATGAAATCCACCATATCTTTGCTACTGGTCGTTA
TCTGCACCGTGGTCCTGGCCGCGCAACAGAGCCAAGCGAAAAAGGGATGC
CAGGCCTACGGTCATGTGTGCTACGGTGGTCATGGCAAGCGCTCTCTGAG
CCCCGGATCCGGGTCTGGAACGGGAGTGGGCGGGGGAATGGGCGAGGCAG
CCTCCGGGGGGCAGGAACCGGACTATGTGCGTCCGAATGGCCTACTGCCC
ATGATGGCGCCAAATGAACAGGTGCCGCTCGAGGGCGACTTTAATGACTA
TCCCGCCCGTCAGGTGCTTTACAAAATCATGAAATCATGGTTTAACCGAC
CTCGCCGACCCGCCTCTCGCCTGGGTGAACTTGATTATCCCTTGGCCAAT
TCCGCCGAATTGAATGGCGTGAACTAAAAGCTTTCTAGACCAT

BS11427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-RC 411 CG14375-PC 1..411 17..427 2055 100 Plus
CCHa2-RB 411 CG14375-PB 1..411 17..427 2055 100 Plus
CCHa2-RA 411 CG14375-PA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-RC 1322 CG14375-RC 297..708 16..427 2060 100 Plus
CCHa2-RB 1281 CG14375-RB 256..667 16..427 2060 100 Plus
CCHa2-RA 1167 CG14375-RA 142..553 16..427 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13390048..13390295 340..93 1240 100 Minus
3R 32079331 3R 13389673..13389760 427..340 440 100 Minus
3R 32079331 3R 13391865..13391941 92..16 385 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:07:39 has no hits.

BS11427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:52 Download gff for BS11427.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 1..411 17..427 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:00 Download gff for BS11427.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 130..549 10..431 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:02 Download gff for BS11427.complete
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 143..551 17..425 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:52 Download gff for BS11427.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 130..549 10..431 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:25 Download gff for BS11427.complete
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 143..551 17..425 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:25 Download gff for BS11427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13389675..13389759 341..425 100 <- Minus
3R 13390048..13390295 93..340 100 <- Minus
3R 13391865..13391940 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:02 Download gff for BS11427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9215397..9215481 341..425 100 <- Minus
arm_3R 9215770..9216017 93..340 100 <- Minus
arm_3R 9217587..9217662 17..92 100   Minus

BS11427.pep Sequence

Translation from 16 to 426

> BS11427.pep
MKSTISLLLVVICTVVLAAQQSQAKKGCQAYGHVCYGGHGKRSLSPGSGS
GTGVGGGMGEAASGGQEPDYVRPNGLLPMMAPNEQVPLEGDFNDYPARQV
LYKIMKSWFNRPRRPASRLGELDYPLANSAELNGVN*

BS11427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-PC 136 CG14375-PC 1..136 1..136 720 100 Plus
CCHa2-PB 136 CG14375-PB 1..136 1..136 720 100 Plus
CCHa2-PA 136 CG14375-PA 1..136 1..136 720 100 Plus