Clone Sequence Records
BS11427.5prime Sequence
441 bp (440 high quality bases) assembled on 2006-05-08
> BS11427.5prime
GAAGTTATCAGTCGACATGAAATCCACCATATCTTTGCTACTGGTCGTTA
TCTGCACCGTGGTCCTGGCCGCGCAACAGAGCCAAGCGAAAAAGGGATGC
CAGGCCTACGGTCATGTGTGCTACGGTGGTCATGGCAAGCGCTCTCTGAG
CCCCGGATCCGGGTCTGGAACGGGAGTGGGCGGGGGAATGGGCGAGGCAG
CCTCCGGGGGGCAGGAACCGGACTATGTGCGTCCGAATGGCCTACTGCCC
ATGATGGCGCCAAATGAACAGGTGCCGCTCGAGGGCGACTTTAATGACTA
TCCCGCCCGTCAGGTGCTTTACAAAATCATGAAATCATGGTTTAACCGAC
CTCGCCGACCCGCCTCTCGCCTGGGTGAACTTGATTATCCCTTGGCCAAT
TCCGCCGAATTGAATGGCGTGAACTAAAAGCTTTCTAGACC
BS11427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14375-PA | 411 | CG14375-RA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-RC | 1322 | CG14375-RC | 297..708 | 16..427 | 2060 | 100 | Plus |
CCHa2-RB | 1281 | CG14375-RB | 256..667 | 16..427 | 2060 | 100 | Plus |
CCHa2-RA | 1167 | CG14375-RA | 142..553 | 16..427 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13390048..13390295 | 340..93 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 13389673..13389760 | 427..340 | 440 | 100 | Minus |
3R | 32079331 | 3R | 13391865..13391941 | 92..16 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:49:32 has no hits.
BS11427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:49 Download gff for
BS11427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-PA | 1..411 | 17..427 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:15 Download gff for
BS11427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-PA | 1..411 | 17..427 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:23 Download gff for
BS11427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 137..556 | 10..431 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:41 Download gff for
BS11427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 137..556 | 10..431 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:41 Download gff for
BS11427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13389670..13389759 | 341..431 | 97 | <- | Minus |
3R | 13390048..13390295 | 93..340 | 100 | <- | Minus |
3R | 13391865..13391945 | 11..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:23 Download gff for
BS11427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9215392..9215481 | 341..431 | 97 | <- | Minus |
arm_3R | 9215770..9216017 | 93..340 | 100 | <- | Minus |
arm_3R | 9217587..9217667 | 11..92 | 96 | | Minus |
BS11427.3prime Sequence
441 bp (440 high quality bases) assembled on 2006-05-08
> BS11427.3prime
ATGGTCTAGAAAGCTTTTAGTTCACGCCATTCAATTCGGCGGAATTGGCC
AAGGGATAATCAAGTTCACCCAGGCGAGAGGCGGGTCGGCGAGGTCGGTT
AAACCATGATTTCATGATTTTGTAAAGCACCTGACGGGCGGGATAGTCAT
TAAAGTCGCCCTCGAGCGGCACCTGTTCATTTGGCGCCATCATGGGCAGT
AGGCCATTCGGACGCACATAGTCCGGTTCCTGCCCCCCGGAGGCTGCCTC
GCCCATTCCCCCGCCCACTCCCGTTCCAGACCCGGATCCGGGGCTCAGAG
AGCGCTTGCCATGACCACCGTAGCACACATGACCGTAGGCCTGGCATCCC
TTTTTCGCTTGGCTCTGTTGCGCGGCCAGGACCACGGTGCAGATAACGAC
CAGTAGCAAAGATATGGTGGATTTCATGTCGACTGATAACT
BS11427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14375-PA | 411 | CG14375-RA | 1..411 | 427..17 | 2055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-RC | 1322 | CG14375-RC | 297..708 | 428..17 | 2060 | 100 | Minus |
CCHa2-RB | 1281 | CG14375-RB | 256..667 | 428..17 | 2060 | 100 | Minus |
CCHa2-RA | 1167 | CG14375-RA | 142..553 | 428..17 | 2060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13390048..13390295 | 104..351 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 13389673..13389760 | 17..104 | 440 | 100 | Plus |
3R | 32079331 | 3R | 13391865..13391941 | 352..428 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:25:29 has no hits.
BS11427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:47 Download gff for
BS11427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-PA | 1..411 | 17..427 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:14 Download gff for
BS11427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-PA | 1..411 | 17..427 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:24:46 Download gff for
BS11427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 137..556 | 13..434 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:34 Download gff for
BS11427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 137..556 | 13..434 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:34 Download gff for
BS11427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13389670..13389759 | 13..103 | 97 | <- | Plus |
3R | 13390048..13390295 | 104..351 | 100 | <- | Plus |
3R | 13391865..13391945 | 352..433 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:24:46 Download gff for
BS11427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9215392..9215481 | 13..103 | 97 | <- | Plus |
arm_3R | 9215770..9216017 | 104..351 | 100 | <- | Plus |
arm_3R | 9217587..9217667 | 352..433 | 96 | | Plus |
BS11427.complete Sequence
443 bp assembled on 2006-11-01
GenBank Submission: FJ636863
> BS11427.complete
GAAGTTATCAGTCGACATGAAATCCACCATATCTTTGCTACTGGTCGTTA
TCTGCACCGTGGTCCTGGCCGCGCAACAGAGCCAAGCGAAAAAGGGATGC
CAGGCCTACGGTCATGTGTGCTACGGTGGTCATGGCAAGCGCTCTCTGAG
CCCCGGATCCGGGTCTGGAACGGGAGTGGGCGGGGGAATGGGCGAGGCAG
CCTCCGGGGGGCAGGAACCGGACTATGTGCGTCCGAATGGCCTACTGCCC
ATGATGGCGCCAAATGAACAGGTGCCGCTCGAGGGCGACTTTAATGACTA
TCCCGCCCGTCAGGTGCTTTACAAAATCATGAAATCATGGTTTAACCGAC
CTCGCCGACCCGCCTCTCGCCTGGGTGAACTTGATTATCCCTTGGCCAAT
TCCGCCGAATTGAATGGCGTGAACTAAAAGCTTTCTAGACCAT
BS11427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-RC | 411 | CG14375-PC | 1..411 | 17..427 | 2055 | 100 | Plus |
CCHa2-RB | 411 | CG14375-PB | 1..411 | 17..427 | 2055 | 100 | Plus |
CCHa2-RA | 411 | CG14375-PA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-RC | 1322 | CG14375-RC | 297..708 | 16..427 | 2060 | 100 | Plus |
CCHa2-RB | 1281 | CG14375-RB | 256..667 | 16..427 | 2060 | 100 | Plus |
CCHa2-RA | 1167 | CG14375-RA | 142..553 | 16..427 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13390048..13390295 | 340..93 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 13389673..13389760 | 427..340 | 440 | 100 | Minus |
3R | 32079331 | 3R | 13391865..13391941 | 92..16 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:07:39 has no hits.
BS11427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:52 Download gff for
BS11427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-RA | 1..411 | 17..427 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:00 Download gff for
BS11427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-RA | 130..549 | 10..431 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:02 Download gff for
BS11427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 143..551 | 17..425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:52 Download gff for
BS11427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-RA | 130..549 | 10..431 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:25 Download gff for
BS11427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 143..551 | 17..425 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:25 Download gff for
BS11427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13389675..13389759 | 341..425 | 100 | <- | Minus |
3R | 13390048..13390295 | 93..340 | 100 | <- | Minus |
3R | 13391865..13391940 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:02 Download gff for
BS11427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9215397..9215481 | 341..425 | 100 | <- | Minus |
arm_3R | 9215770..9216017 | 93..340 | 100 | <- | Minus |
arm_3R | 9217587..9217662 | 17..92 | 100 | | Minus |
BS11427.pep Sequence
Translation from 16 to 426
> BS11427.pep
MKSTISLLLVVICTVVLAAQQSQAKKGCQAYGHVCYGGHGKRSLSPGSGS
GTGVGGGMGEAASGGQEPDYVRPNGLLPMMAPNEQVPLEGDFNDYPARQV
LYKIMKSWFNRPRRPASRLGELDYPLANSAELNGVN*
BS11427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-PC | 136 | CG14375-PC | 1..136 | 1..136 | 720 | 100 | Plus |
CCHa2-PB | 136 | CG14375-PB | 1..136 | 1..136 | 720 | 100 | Plus |
CCHa2-PA | 136 | CG14375-PA | 1..136 | 1..136 | 720 | 100 | Plus |