Clone BS11429 Report

Search the DGRC for BS11429

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG4658-RA
Protein status:BS11429.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11429.3prime Sequence

887 bp (852 high quality bases) assembled on 2006-05-08

> BS11429.3prime
ATGGTCTAGAAAGCTTTCAATTGTTGTAGTTCTGCCTGCCGCCCAGCTCG
AGGAGATATCGATCCGGATGGTCCATCCAGTCGGCGGCCGTGAGCTTCAC
TGTCCGCTGCCGTTCGGCCTCCTTGATTTGCCACTTCTTGATGTCCAATT
GCACTTCGCGTGATGATTTGTCGCCGCAGCCCCACACCTCTATGGACATG
AGTCCAGCCGCCAGTCCCTTGCAGTCAATATTCTCGAAATGCTCATCGAC
TGCTATAATGGGTTTTCGCGGATCGGCGCCGGCACGTAAGCCCTTCGGAT
AGCCGCGTATGCTGGTGTTTAGGTAAAGAATGTTGGGCTTTTTTTCCAGT
ATCACAAACTTGGGCAGCAGCTGGATAACACAGCTGCCCTCGCCGCCCAC
AAACAGATGCGTTTCCTTCCACTCACTGGGTGAGGCCACGCAATACGTCT
GTTCATCCTTGGTATGGAGCAGGACCAGTGTTGGACCCCGATAGCCGAGG
ACGTGGTGCAGAAACCGGTTGGCTCCCACGCCATGCTCATTGGAGTTGTA
CAGCAGTGTCCAGTGTGACGGCATCATCGACAGCTTGTCCTTGAAAATCT
GTACCGCTGTGGACGCGCTAACGTTGTTGTTTCCCTTTGTGGCCGGCGGT
GTCACAGTTTGGGGCTTGGAGTAGAGTGGCGGCAGAGCTCCAGCCAGCAG
CCAGGCTTGCGAAAGCGGCATCAGCGAGTCCATCTCCCTCGTGCTACCGC
CACTAAAGTCGGTGGTATCTGTGAAGGGATTACGTTGCTCAAGCACCGGC
GTCTGCAACTCAATGCCGCATGACTGATTCTGCTGCTCTAGACCACGGTA
AGCGGGTGACAAAGTGTGCACACAGTACTTGTGCACG

BS11429.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-PB 1581 CG4658-RB 711..1581 887..17 4330 99.8 Minus
CG4658-PC 1581 CG4658-RC 711..1581 887..17 4330 99.8 Minus
CG4658-PA 1581 CG4658-RA 711..1581 887..17 4330 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-RD 2486 CG4658-RD 1168..2038 887..17 4340 99.9 Minus
CG4658-RA 2323 CG4658-RA 1005..1875 887..17 4340 99.9 Minus
CG4658-RC 2224 CG4658-RC 906..1776 887..17 4340 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9958358..9958887 887..358 2635 99.8 Minus
2L 23513712 2L 9958940..9959113 359..186 870 100 Minus
2L 23513712 2L 9959548..9959720 189..17 865 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:31:36 has no hits.

BS11429.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:53 Download gff for BS11429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-PC 711..1581 17..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:19 Download gff for BS11429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-PA 711..1581 17..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:42 Download gff for BS11429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 906..1780 13..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:56 Download gff for BS11429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 906..1780 13..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:56 Download gff for BS11429.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9958358..9958885 360..887 99 -> Minus
2L 9958940..9959111 188..359 100 -> Minus
2L 9959550..9959724 13..187 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:42 Download gff for BS11429.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9958358..9958885 360..887 99 -> Minus
arm_2L 9958940..9959111 188..359 100 -> Minus
arm_2L 9959550..9959724 13..187 98   Minus

BS11429.5prime Sequence

899 bp (854 high quality bases) assembled on 2006-05-08

> BS11429.5prime
GAAGTTATCAGTCGACATGGGCAACACGAGTTCCAAGGGCGAGTCGGACG
CCAGTGAGCCACCCCTGGAGGGAGGCAAGCCGTACAAGCAGCATCAGCAG
CACAAGTCCAGTGATGCTTCCCACAACGGAGTCTCTGACGTGGGCGGCAG
CCACAACAATCTAAAGGTGACGCAGGCGCAGGGCTCGATGACCAGGTCGG
CTTCTGGCGCGGATGTCACCGAGAAGTACCTCACCCAGCTGGTGCCGGTG
GAGAAGCTAGCCGAGATTCTCAGGGAGCAGACGTCGTCCAAACTGGGCAT
TAATGGCATTGTGGCAGATGTCTTTGTGTCACAAGTCTTTCCGCAGTACG
CCGACCTGGGACAGCGGCTGTTCAACCTGATGCACTCCAACTCCAAGGCC
ACAACGAAACATCTGGGCGCCGTTGCTTTCCGGCAACAGTGCGAACGCTT
TTTGGGCATCATGGATGACTCGAAGACGCTGGAGTGCTACATTAAGATGT
ACGCCCAGGAGGAGAATCCGGACCAAATTGACAAGACGGGAGTGACGCGG
TTGCTCCACATCTGCTACACCATTGCCATGCAGCACTCGGGCAACGCCGT
GCTGTGCCCGGCCATCAACCGCACGTTCGGTTCGGTGACCAAGTCCATTT
TCCTGTGCCACGACAGTATGAGTCTGGGCTACGTTTGCCGCTGGTTCGAG
CAGAACCTGATGCGGCTGGTGCTCCTCGTGCACAAGTACTGTGTGCACAC
TTTGTCAACCGCTTACCGTGGTCTAGAGCAGCAGAATCAGTCATGCGGCA
TTGAGTTGCAGACGCCGGTGCTTGAGCAACGTAATCCCTTCACAGATACC
ACCGACTTTAGTGGCGGTAGCACGAGGGAGATGGACTCGCTGATGCCGC

BS11429.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-PB 1581 CG4658-RB 1..883 17..899 4415 100 Plus
CG4658-PC 1581 CG4658-RC 1..883 17..899 4415 100 Plus
CG4658-PA 1581 CG4658-RA 1..883 17..899 4415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-RE 1953 CG4658-RE 295..1177 17..899 4415 100 Plus
CG4658-RD 2486 CG4658-RD 458..1340 17..899 4415 100 Plus
CG4658-RA 2323 CG4658-RA 295..1177 17..899 4415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9957959..9958530 328..899 2860 100 Plus
2L 23513712 2L 9957589..9957900 17..328 1560 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:19:40 has no hits.

BS11429.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:54 Download gff for BS11429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-PC 1..883 17..899 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:21 Download gff for BS11429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:40 Download gff for BS11429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 286..1177 7..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:01 Download gff for BS11429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 286..1177 7..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:01 Download gff for BS11429.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9957580..9957900 7..328 98 -> Plus
2L 9957960..9958530 329..899 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:40 Download gff for BS11429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9957580..9957900 7..328 98 -> Plus
arm_2L 9957960..9958530 329..899 100   Plus

BS11429.complete Sequence

1613 bp assembled on 2006-11-01

GenBank Submission: FJ636864

> BS11429.complete
GAAGTTATCAGTCGACATGGGCAACACGAGTTCCAAGGGCGAGTCGGACG
CCAGTGAGCCACCCCTGGAGGGAGGCAAGCCGTACAAGCAGCATCAGCAG
CACAAGTCCAGTGATGCTTCCCACAACGGAGTCTCTGACGTGGGCGGCAG
CCACAACAATCTAAAGGTGACGCAGGCGCAGGGCTCGATGACCAGGTCGG
CTTCTGGCGCGGATGTCACCGAGAAGTACCTCACCCAGCTGGTGCCGGTG
GAGAAGCTAGCCGAGATTCTCAGGGAGCAGACGTCGTCCAAACTGGGCAT
TAATGGCATTGTGGCAGATGTCTTTGTGTCACAAGTCTTTCCGCAGTACG
CCGACCTGGGACAGCGGCTGTTCAACCTGATGCACTCCAACTCCAAGGCC
ACAACGAAACATCTGGGCGCCGTTGCTTTCCGGCAACAGTGCGAACGCTT
TTTGGGCATCATGGATGACTCGAAGACGCTGGAGTGCTACATTAAGATGT
ACGCCCAGGAGGAGAATCCGGACCAAATTGACAAGACGGGAGTGACGCGG
TTGCTCCACATCTGCTACACCATTGCCATGCAGCACTCGGGCAACGCCGT
GCTGTGCCCGGCCATCAACCGCACGTTCGGTTCGGTGACCAAGTCCATTT
TCCTGTGCCACGACAGTATGAGTCTGGGCTACGTTTGCCGCTGGTTCGAG
CAGAACCTGATGCGGCTGGTGCTCCTCGTGCACAAGTACTGTGTGCACAC
TTTGTCAACCGCTTACCGTGGTCTAGAGCAGCAGAATCAGTCATGCGGCA
TTGAGTTGCAGACGCCGGTGCTTGAGCAACGTAATCCCTTCACAGATACC
ACCGACTTTAGTGGCGGTAGCACGAGGGAGATGGACTCGCTGATGCCGCT
TTCGCAAGCCTGGCTGCTGGCTGGAGCTCTGCCGCCACTCTACTCCAAGC
CCCAAACTGTGACACCGCCGGCCACAAAGGGAAACAACAACGTTAGCGCG
TCCACAGCGGTACAGATTTTCAAGGACAAGCTGTCGATGATGCCGTCACA
CTGGACACTGCTGTACAACTCCAATGAGCATGGCGTGGGAGCCAACCGGT
TTCTGCACCACGTCCTCGGCTATCGGGGTCCAACACTGGTCCTGCTCCAT
ACCAAGGATGAACAGACGTATTGCGTGGCCTCACCCAGTGAGTGGAAGGA
AACGCATCTGTTTGTGGGCGGCGAGGGCAGCTGTGTTATCCAGCTGCTGC
CCAAGTTTGTGATACTGGAAAAAAAGCCCAACATTCTTTACCTAAACACC
AGCATACGCGGCTATCCGAAGGGCTTACGTGCCGGCGCCGATCCGCGAAA
ACCCATTATAGCAGTCGATGAGCATTTCGAGAATATTGACTGCAAGGGAC
TGGCGGCTGGACTCATGTCCATAGAGGTGTGGGGCTGCGGCGACAAATCA
TCACGCGAAGTGCAATTGGACATCAAGAAGTGGCAAATCAAGGAGGCCGA
ACGGCAGCGGACAGTGAAGCTCACGGCCGCCGACTGGATGGACCATCCGG
ATCGATATCTCCTCGAGCTGGGCGGCAGGCAGAACTACAACAATTGAAAG
CTTTCTAGACCAT

BS11429.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-RD 1581 CG4658-PD 1..1581 17..1597 7905 100 Plus
CG4658-RA 1581 CG4658-PA 1..1581 17..1597 7905 100 Plus
CG4658-RC 1581 CG4658-PC 1..1581 17..1597 7905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-RD 2486 CG4658-RD 458..2038 17..1597 7905 100 Plus
CG4658-RA 2323 CG4658-RA 295..1875 17..1597 7905 100 Plus
CG4658-RC 2224 CG4658-RC 196..1776 17..1597 7905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9957959..9958887 328..1256 4645 100 Plus
2L 23513712 2L 9957589..9957900 17..328 1560 100 Plus
2L 23513712 2L 9958940..9959113 1255..1428 870 100 Plus
2L 23513712 2L 9959548..9959720 1425..1597 865 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:54:24 has no hits.

BS11429.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:53 Download gff for BS11429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 1..1581 17..1597 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:02 Download gff for BS11429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 294..1887 7..1601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:24 Download gff for BS11429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 196..1775 17..1596 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:53 Download gff for BS11429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 294..1887 7..1601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:21 Download gff for BS11429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 196..1775 17..1596 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:21 Download gff for BS11429.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9957589..9957900 17..328 100 -> Plus
2L 9957960..9958885 329..1254 100 -> Plus
2L 9958940..9959111 1255..1426 100 -> Plus
2L 9959550..9959719 1427..1596 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:24 Download gff for BS11429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9957589..9957900 17..328 100 -> Plus
arm_2L 9957960..9958885 329..1254 100 -> Plus
arm_2L 9958940..9959111 1255..1426 100 -> Plus
arm_2L 9959550..9959719 1427..1596 100   Plus

BS11429.pep Sequence

Translation from 16 to 1596

> BS11429.pep
MGNTSSKGESDASEPPLEGGKPYKQHQQHKSSDASHNGVSDVGGSHNNLK
VTQAQGSMTRSASGADVTEKYLTQLVPVEKLAEILREQTSSKLGINGIVA
DVFVSQVFPQYADLGQRLFNLMHSNSKATTKHLGAVAFRQQCERFLGIMD
DSKTLECYIKMYAQEENPDQIDKTGVTRLLHICYTIAMQHSGNAVLCPAI
NRTFGSVTKSIFLCHDSMSLGYVCRWFEQNLMRLVLLVHKYCVHTLSTAY
RGLEQQNQSCGIELQTPVLEQRNPFTDTTDFSGGSTREMDSLMPLSQAWL
LAGALPPLYSKPQTVTPPATKGNNNVSASTAVQIFKDKLSMMPSHWTLLY
NSNEHGVGANRFLHHVLGYRGPTLVLLHTKDEQTYCVASPSEWKETHLFV
GGEGSCVIQLLPKFVILEKKPNILYLNTSIRGYPKGLRAGADPRKPIIAV
DEHFENIDCKGLAAGLMSIEVWGCGDKSSREVQLDIKKWQIKEAERQRTV
KLTAADWMDHPDRYLLELGGRQNYNN*

BS11429.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-PD 526 CG4658-PD 1..526 1..526 2780 100 Plus
CG4658-PA 526 CG4658-PA 1..526 1..526 2780 100 Plus
CG4658-PC 526 CG4658-PC 1..526 1..526 2780 100 Plus
CG4658-PB 526 CG4658-PB 1..526 1..526 2780 100 Plus
CG4658-PE 491 CG4658-PE 1..471 1..471 2476 100 Plus