Clone Sequence Records
BS11429.3prime Sequence
887 bp (852 high quality bases) assembled on 2006-05-08
> BS11429.3prime
ATGGTCTAGAAAGCTTTCAATTGTTGTAGTTCTGCCTGCCGCCCAGCTCG
AGGAGATATCGATCCGGATGGTCCATCCAGTCGGCGGCCGTGAGCTTCAC
TGTCCGCTGCCGTTCGGCCTCCTTGATTTGCCACTTCTTGATGTCCAATT
GCACTTCGCGTGATGATTTGTCGCCGCAGCCCCACACCTCTATGGACATG
AGTCCAGCCGCCAGTCCCTTGCAGTCAATATTCTCGAAATGCTCATCGAC
TGCTATAATGGGTTTTCGCGGATCGGCGCCGGCACGTAAGCCCTTCGGAT
AGCCGCGTATGCTGGTGTTTAGGTAAAGAATGTTGGGCTTTTTTTCCAGT
ATCACAAACTTGGGCAGCAGCTGGATAACACAGCTGCCCTCGCCGCCCAC
AAACAGATGCGTTTCCTTCCACTCACTGGGTGAGGCCACGCAATACGTCT
GTTCATCCTTGGTATGGAGCAGGACCAGTGTTGGACCCCGATAGCCGAGG
ACGTGGTGCAGAAACCGGTTGGCTCCCACGCCATGCTCATTGGAGTTGTA
CAGCAGTGTCCAGTGTGACGGCATCATCGACAGCTTGTCCTTGAAAATCT
GTACCGCTGTGGACGCGCTAACGTTGTTGTTTCCCTTTGTGGCCGGCGGT
GTCACAGTTTGGGGCTTGGAGTAGAGTGGCGGCAGAGCTCCAGCCAGCAG
CCAGGCTTGCGAAAGCGGCATCAGCGAGTCCATCTCCCTCGTGCTACCGC
CACTAAAGTCGGTGGTATCTGTGAAGGGATTACGTTGCTCAAGCACCGGC
GTCTGCAACTCAATGCCGCATGACTGATTCTGCTGCTCTAGACCACGGTA
AGCGGGTGACAAAGTGTGCACACAGTACTTGTGCACG
BS11429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4658-PB | 1581 | CG4658-RB | 711..1581 | 887..17 | 4330 | 99.8 | Minus |
CG4658-PC | 1581 | CG4658-RC | 711..1581 | 887..17 | 4330 | 99.8 | Minus |
CG4658-PA | 1581 | CG4658-RA | 711..1581 | 887..17 | 4330 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4658-RD | 2486 | CG4658-RD | 1168..2038 | 887..17 | 4340 | 99.9 | Minus |
CG4658-RA | 2323 | CG4658-RA | 1005..1875 | 887..17 | 4340 | 99.9 | Minus |
CG4658-RC | 2224 | CG4658-RC | 906..1776 | 887..17 | 4340 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9958358..9958887 | 887..358 | 2635 | 99.8 | Minus |
2L | 23513712 | 2L | 9958940..9959113 | 359..186 | 870 | 100 | Minus |
2L | 23513712 | 2L | 9959548..9959720 | 189..17 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:31:36 has no hits.
BS11429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:53 Download gff for
BS11429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-PC | 711..1581 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:19 Download gff for
BS11429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-PA | 711..1581 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:42 Download gff for
BS11429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-RC | 906..1780 | 13..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:56 Download gff for
BS11429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-RC | 906..1780 | 13..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:56 Download gff for
BS11429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9958358..9958885 | 360..887 | 99 | -> | Minus |
2L | 9958940..9959111 | 188..359 | 100 | -> | Minus |
2L | 9959550..9959724 | 13..187 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:42 Download gff for
BS11429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9958358..9958885 | 360..887 | 99 | -> | Minus |
arm_2L | 9958940..9959111 | 188..359 | 100 | -> | Minus |
arm_2L | 9959550..9959724 | 13..187 | 98 | | Minus |
BS11429.5prime Sequence
899 bp (854 high quality bases) assembled on 2006-05-08
> BS11429.5prime
GAAGTTATCAGTCGACATGGGCAACACGAGTTCCAAGGGCGAGTCGGACG
CCAGTGAGCCACCCCTGGAGGGAGGCAAGCCGTACAAGCAGCATCAGCAG
CACAAGTCCAGTGATGCTTCCCACAACGGAGTCTCTGACGTGGGCGGCAG
CCACAACAATCTAAAGGTGACGCAGGCGCAGGGCTCGATGACCAGGTCGG
CTTCTGGCGCGGATGTCACCGAGAAGTACCTCACCCAGCTGGTGCCGGTG
GAGAAGCTAGCCGAGATTCTCAGGGAGCAGACGTCGTCCAAACTGGGCAT
TAATGGCATTGTGGCAGATGTCTTTGTGTCACAAGTCTTTCCGCAGTACG
CCGACCTGGGACAGCGGCTGTTCAACCTGATGCACTCCAACTCCAAGGCC
ACAACGAAACATCTGGGCGCCGTTGCTTTCCGGCAACAGTGCGAACGCTT
TTTGGGCATCATGGATGACTCGAAGACGCTGGAGTGCTACATTAAGATGT
ACGCCCAGGAGGAGAATCCGGACCAAATTGACAAGACGGGAGTGACGCGG
TTGCTCCACATCTGCTACACCATTGCCATGCAGCACTCGGGCAACGCCGT
GCTGTGCCCGGCCATCAACCGCACGTTCGGTTCGGTGACCAAGTCCATTT
TCCTGTGCCACGACAGTATGAGTCTGGGCTACGTTTGCCGCTGGTTCGAG
CAGAACCTGATGCGGCTGGTGCTCCTCGTGCACAAGTACTGTGTGCACAC
TTTGTCAACCGCTTACCGTGGTCTAGAGCAGCAGAATCAGTCATGCGGCA
TTGAGTTGCAGACGCCGGTGCTTGAGCAACGTAATCCCTTCACAGATACC
ACCGACTTTAGTGGCGGTAGCACGAGGGAGATGGACTCGCTGATGCCGC
BS11429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4658-PB | 1581 | CG4658-RB | 1..883 | 17..899 | 4415 | 100 | Plus |
CG4658-PC | 1581 | CG4658-RC | 1..883 | 17..899 | 4415 | 100 | Plus |
CG4658-PA | 1581 | CG4658-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4658-RE | 1953 | CG4658-RE | 295..1177 | 17..899 | 4415 | 100 | Plus |
CG4658-RD | 2486 | CG4658-RD | 458..1340 | 17..899 | 4415 | 100 | Plus |
CG4658-RA | 2323 | CG4658-RA | 295..1177 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9957959..9958530 | 328..899 | 2860 | 100 | Plus |
2L | 23513712 | 2L | 9957589..9957900 | 17..328 | 1560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:19:40 has no hits.
BS11429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:54 Download gff for
BS11429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-PC | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:21 Download gff for
BS11429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:40 Download gff for
BS11429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-RA | 286..1177 | 7..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:01 Download gff for
BS11429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-RA | 286..1177 | 7..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:01 Download gff for
BS11429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9957580..9957900 | 7..328 | 98 | -> | Plus |
2L | 9957960..9958530 | 329..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:40 Download gff for
BS11429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9957580..9957900 | 7..328 | 98 | -> | Plus |
arm_2L | 9957960..9958530 | 329..899 | 100 | | Plus |
BS11429.complete Sequence
1613 bp assembled on 2006-11-01
GenBank Submission: FJ636864
> BS11429.complete
GAAGTTATCAGTCGACATGGGCAACACGAGTTCCAAGGGCGAGTCGGACG
CCAGTGAGCCACCCCTGGAGGGAGGCAAGCCGTACAAGCAGCATCAGCAG
CACAAGTCCAGTGATGCTTCCCACAACGGAGTCTCTGACGTGGGCGGCAG
CCACAACAATCTAAAGGTGACGCAGGCGCAGGGCTCGATGACCAGGTCGG
CTTCTGGCGCGGATGTCACCGAGAAGTACCTCACCCAGCTGGTGCCGGTG
GAGAAGCTAGCCGAGATTCTCAGGGAGCAGACGTCGTCCAAACTGGGCAT
TAATGGCATTGTGGCAGATGTCTTTGTGTCACAAGTCTTTCCGCAGTACG
CCGACCTGGGACAGCGGCTGTTCAACCTGATGCACTCCAACTCCAAGGCC
ACAACGAAACATCTGGGCGCCGTTGCTTTCCGGCAACAGTGCGAACGCTT
TTTGGGCATCATGGATGACTCGAAGACGCTGGAGTGCTACATTAAGATGT
ACGCCCAGGAGGAGAATCCGGACCAAATTGACAAGACGGGAGTGACGCGG
TTGCTCCACATCTGCTACACCATTGCCATGCAGCACTCGGGCAACGCCGT
GCTGTGCCCGGCCATCAACCGCACGTTCGGTTCGGTGACCAAGTCCATTT
TCCTGTGCCACGACAGTATGAGTCTGGGCTACGTTTGCCGCTGGTTCGAG
CAGAACCTGATGCGGCTGGTGCTCCTCGTGCACAAGTACTGTGTGCACAC
TTTGTCAACCGCTTACCGTGGTCTAGAGCAGCAGAATCAGTCATGCGGCA
TTGAGTTGCAGACGCCGGTGCTTGAGCAACGTAATCCCTTCACAGATACC
ACCGACTTTAGTGGCGGTAGCACGAGGGAGATGGACTCGCTGATGCCGCT
TTCGCAAGCCTGGCTGCTGGCTGGAGCTCTGCCGCCACTCTACTCCAAGC
CCCAAACTGTGACACCGCCGGCCACAAAGGGAAACAACAACGTTAGCGCG
TCCACAGCGGTACAGATTTTCAAGGACAAGCTGTCGATGATGCCGTCACA
CTGGACACTGCTGTACAACTCCAATGAGCATGGCGTGGGAGCCAACCGGT
TTCTGCACCACGTCCTCGGCTATCGGGGTCCAACACTGGTCCTGCTCCAT
ACCAAGGATGAACAGACGTATTGCGTGGCCTCACCCAGTGAGTGGAAGGA
AACGCATCTGTTTGTGGGCGGCGAGGGCAGCTGTGTTATCCAGCTGCTGC
CCAAGTTTGTGATACTGGAAAAAAAGCCCAACATTCTTTACCTAAACACC
AGCATACGCGGCTATCCGAAGGGCTTACGTGCCGGCGCCGATCCGCGAAA
ACCCATTATAGCAGTCGATGAGCATTTCGAGAATATTGACTGCAAGGGAC
TGGCGGCTGGACTCATGTCCATAGAGGTGTGGGGCTGCGGCGACAAATCA
TCACGCGAAGTGCAATTGGACATCAAGAAGTGGCAAATCAAGGAGGCCGA
ACGGCAGCGGACAGTGAAGCTCACGGCCGCCGACTGGATGGACCATCCGG
ATCGATATCTCCTCGAGCTGGGCGGCAGGCAGAACTACAACAATTGAAAG
CTTTCTAGACCAT
BS11429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4658-RD | 1581 | CG4658-PD | 1..1581 | 17..1597 | 7905 | 100 | Plus |
CG4658-RA | 1581 | CG4658-PA | 1..1581 | 17..1597 | 7905 | 100 | Plus |
CG4658-RC | 1581 | CG4658-PC | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4658-RD | 2486 | CG4658-RD | 458..2038 | 17..1597 | 7905 | 100 | Plus |
CG4658-RA | 2323 | CG4658-RA | 295..1875 | 17..1597 | 7905 | 100 | Plus |
CG4658-RC | 2224 | CG4658-RC | 196..1776 | 17..1597 | 7905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9957959..9958887 | 328..1256 | 4645 | 100 | Plus |
2L | 23513712 | 2L | 9957589..9957900 | 17..328 | 1560 | 100 | Plus |
2L | 23513712 | 2L | 9958940..9959113 | 1255..1428 | 870 | 100 | Plus |
2L | 23513712 | 2L | 9959548..9959720 | 1425..1597 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:54:24 has no hits.
BS11429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:53 Download gff for
BS11429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-RA | 1..1581 | 17..1597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:02 Download gff for
BS11429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-RA | 294..1887 | 7..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:24 Download gff for
BS11429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-RC | 196..1775 | 17..1596 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:53 Download gff for
BS11429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-RA | 294..1887 | 7..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:21 Download gff for
BS11429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4658-RC | 196..1775 | 17..1596 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:21 Download gff for
BS11429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9957589..9957900 | 17..328 | 100 | -> | Plus |
2L | 9957960..9958885 | 329..1254 | 100 | -> | Plus |
2L | 9958940..9959111 | 1255..1426 | 100 | -> | Plus |
2L | 9959550..9959719 | 1427..1596 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:24 Download gff for
BS11429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9957589..9957900 | 17..328 | 100 | -> | Plus |
arm_2L | 9957960..9958885 | 329..1254 | 100 | -> | Plus |
arm_2L | 9958940..9959111 | 1255..1426 | 100 | -> | Plus |
arm_2L | 9959550..9959719 | 1427..1596 | 100 | | Plus |
BS11429.pep Sequence
Translation from 16 to 1596
> BS11429.pep
MGNTSSKGESDASEPPLEGGKPYKQHQQHKSSDASHNGVSDVGGSHNNLK
VTQAQGSMTRSASGADVTEKYLTQLVPVEKLAEILREQTSSKLGINGIVA
DVFVSQVFPQYADLGQRLFNLMHSNSKATTKHLGAVAFRQQCERFLGIMD
DSKTLECYIKMYAQEENPDQIDKTGVTRLLHICYTIAMQHSGNAVLCPAI
NRTFGSVTKSIFLCHDSMSLGYVCRWFEQNLMRLVLLVHKYCVHTLSTAY
RGLEQQNQSCGIELQTPVLEQRNPFTDTTDFSGGSTREMDSLMPLSQAWL
LAGALPPLYSKPQTVTPPATKGNNNVSASTAVQIFKDKLSMMPSHWTLLY
NSNEHGVGANRFLHHVLGYRGPTLVLLHTKDEQTYCVASPSEWKETHLFV
GGEGSCVIQLLPKFVILEKKPNILYLNTSIRGYPKGLRAGADPRKPIIAV
DEHFENIDCKGLAAGLMSIEVWGCGDKSSREVQLDIKKWQIKEAERQRTV
KLTAADWMDHPDRYLLELGGRQNYNN*
BS11429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4658-PD | 526 | CG4658-PD | 1..526 | 1..526 | 2780 | 100 | Plus |
CG4658-PA | 526 | CG4658-PA | 1..526 | 1..526 | 2780 | 100 | Plus |
CG4658-PC | 526 | CG4658-PC | 1..526 | 1..526 | 2780 | 100 | Plus |
CG4658-PB | 526 | CG4658-PB | 1..526 | 1..526 | 2780 | 100 | Plus |
CG4658-PE | 491 | CG4658-PE | 1..471 | 1..471 | 2476 | 100 | Plus |