Clone Sequence Records
BS11433.complete Sequence
1901 bp assembled on 2009-12-07
GenBank Submission: KX800678
> BS11433.complete
GAAGTTATCAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAG
CAGCTGCCACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAA
GAGTCGCCAAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACAC
GACGCCCGCCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACG
AGCGCATTCTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGA
CAGAAGGCGGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGG
CAATGTGTGGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCT
TCCTGGTGCCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTC
TACATGGAGCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCAT
CTGGAAGCGCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCC
TAATCGACATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCG
GTATACTACCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTG
CGATAATCCCTGGAACACTGAGAACTGCATGCAGGTGACCAGTGAGAACT
TCACGGAACTGGCCACGTCGCCGGCCAAGGAGTTCTTTGAGCGAAAGGTT
TTGGAGAGCTACAAGGGCAACGGGCTGGACTTCATGGGTCCGGTGAAGCC
CACGCTGGCACTCTGCGTCTTCGGGGTCTTTGTCCTGGTCTACTTCTCCC
TGTGGAAGGGAGTGCGCAGTGCCGGAAAGGTGGTGTGGGTCACCGCTCTG
GCTCCTTATGTGGTGCTAATCATCCTGCTGGTTAGAGGAGTTTCCCTGCC
CGGCGCGGACGAGGGCATCAAGTACTACCTAACCCCGGAGTGGCACAAAC
TGAAGAACTCCAAAGTCTGGATCGACGCCGCATCCCAGATTTTCTTCTCC
CTTGGCCCCGGATTCGGAACCCTGCTGGCCCTGTCCAGCTACAACAAGTT
CAACAACAACTGCTATCGCGATGCTCTCATCACCAGCAGCATCAACTGCT
TGACCAGTTTCCTGGCCGGCTTTGTCATCTTCTCCGTTTTGGGGTACATG
GCCTACGTCCAAAAGACCTCCATCGACAAGGTGGGCCTGGAGGGTCCGGG
GCTGGTGTTCATCGTTTACCCGGAGGCCATAGCCACGATGAGTGGCTCGG
TGTTCTGGAGCATCATCTTCTTCCTGATGCTGATTACCCTGGGACTGGAC
AGCACCTTTGGCGGATTGGAGGCGATGATAACAGCGCTGTGCGACGAGTA
TCCGCGAGTGATTGGCAGGCGCAGGGAGCTGTTCGTCCTGCTGCTCCTGG
CTTTCATCTTCCTGTGCGCCCTTCCCACGATGACCTACGGTGGCGTGGTG
CTGGTCAACTTCCTGAATGTCTACGGACCCGGGTTGGCCATCCTCTTTGT
GGTCTTCGTGGAGGCAGCCGGAGTCTTTTGGTTCTACGGAGTGGACCGCT
TCAGCTCGGATGTGGAACAGATGCTGGGCAGCAAGCCAGGCTTATTCTGG
CGGATCTGCTGGACGTACATCAGCCCTGTGTTCCTGCTGACCATATTCAT
TTTCTCCATCATGGGCTACAAGGAGATGCTCGGCGAGGAGTACTACTACC
CGGACTGGAGCTACCAGGTGGGCTGGGCGGTCACCTGCTCGTCGGTGCTC
TGCATCCCCATGTACATTATCTACAAGTTCTTCTTCGCCTCGAAAGGCGG
CTGCCGCCAGAGGCTGCAGGAGTCCTTCCAGCCGGAGGACAACTGCGGAT
CGGTGGTGCCCGGCCAACAGGGCACCTCGGTGTGAAAGCTTTCTAGACCA
T
BS11433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-RB | 1869 | CG4545-PB | 1..1869 | 17..1885 | 9345 | 100 | Plus |
SerT-RA | 1869 | CG4545-PA | 1..1869 | 17..1885 | 9345 | 100 | Plus |
ine-RF | 2832 | CG15444-PF | 1729..1838 | 950..1059 | 190 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-RB | 3725 | CG4545-RB | 1000..2868 | 17..1885 | 9345 | 100 | Plus |
SerT-RA | 3183 | CG4545-RA | 458..2326 | 17..1885 | 9345 | 100 | Plus |
ine-RF | 3436 | CG15444-RF | 2229..2338 | 950..1059 | 190 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24406931..24407385 | 1145..691 | 2275 | 100 | Minus |
2R | 25286936 | 2R | 24406524..24406820 | 1439..1143 | 1485 | 100 | Minus |
2R | 25286936 | 2R | 24408962..24409241 | 480..201 | 1400 | 100 | Minus |
2R | 25286936 | 2R | 24405452..24405698 | 1885..1639 | 1235 | 100 | Minus |
2R | 25286936 | 2R | 24407441..24407654 | 691..478 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 24405757..24405957 | 1639..1439 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 24409387..24409572 | 202..17 | 930 | 100 | Minus |
2L | 23513712 | 2L | 4469256..4469365 | 1059..950 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:22:40 has no hits.
BS11433.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:03 Download gff for
BS11433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 455..2322 | 17..1884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:47 Download gff for
BS11433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 458..2325 | 17..1884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:01 Download gff for
BS11433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 455..2322 | 17..1884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:10 Download gff for
BS11433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 458..2325 | 17..1884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:10 Download gff for
BS11433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24407442..24407652 | 480..690 | 100 | <- | Minus |
2R | 24408963..24409239 | 203..479 | 100 | <- | Minus |
2R | 24409387..24409572 | 17..202 | 100 | | Minus |
2R | 24405453..24405697 | 1640..1884 | 100 | <- | Minus |
2R | 24405757..24405957 | 1439..1639 | 100 | <- | Minus |
2R | 24406525..24406819 | 1144..1438 | 100 | <- | Minus |
2R | 24406933..24407385 | 691..1143 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:47 Download gff for
BS11433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20292976..20293220 | 1640..1884 | 100 | <- | Minus |
arm_2R | 20293280..20293480 | 1439..1639 | 100 | <- | Minus |
arm_2R | 20294048..20294342 | 1144..1438 | 100 | <- | Minus |
arm_2R | 20294456..20294908 | 691..1143 | 100 | <- | Minus |
arm_2R | 20294965..20295175 | 480..690 | 100 | <- | Minus |
arm_2R | 20296486..20296762 | 203..479 | 100 | <- | Minus |
arm_2R | 20296910..20297095 | 17..202 | 100 | | Minus |
BS11433.3prime Sequence
901 bp (884 high quality bases) assembled on 2006-05-08
> BS11433.3prime
ATGGTCTAGAAAGCTTTCACACCGAGGTGCCCTGTTGGCCGGGCACCACC
GATCCGCAGTTGTCCTCCGGCTGGAAGGACTCCTGCAGCCTCTGGCGGCA
GCCGCCTTTCGAGGCGAAGAAGAACTTGTAGATAATGTACATGGGGATGC
AGAGCACCGACGAGCAGGTGACCGCCCAGCCCACCTGGTAGCTCCAGTCC
GGGTAGTAGTACTCCTCGCCGAGCATCTCCTTGTAGCCCATGATGGAGAA
AATGAATATGGTCAGCAGGAACACAGGGCTGATGTACGTCCAGCAGATCC
GCCAGAATAAGCCTGGCTTGCTGCCCAGCATCTGTTCCACATCCGAGCTG
AAGCGGTCCACTCCGTAGAACCAAAAGACTCCGGCTGCCTCCACGAAGAC
CACAAAGAGGATGGCCAACCCGGGTCCGTAGACATTCAGGAAGTTGACCA
GCACCACGCCACCGTAGGTCATCGTGGGAAGGGCGCACAGGAAGATGAAA
GCCAGGAGCAGCAGGACGAACAGCTCCCTGCGCCTGCCAATCACTCGCGG
ATACTCGTCGCACAGCGCTGTTATCATCGCCTCCAATCCGCCAAAGGTGC
TGTCCAGTCCCAGGGTAATCAGCATCAGGAAGAAGATGATGCTCCAGAAC
ACCGAGCCACTCATCGTGGCTATGGCCTCCGGGTAAACGATGAACACCAG
CCCCGGACCCTCCAGGCCCACCTTGTCGATGGAGGTCTTTTGGACGTAGG
CCATGTACCCCAAAACGGAGAAGATGACAAAGCCGGCCAGGAAACTGGTC
AAGCAGTTGATGCTGCTGGTGATGAGAGCATCGCGATAGCAGTTGTTGTT
GAACTTGTTGTAGCTGGACAGGGCCAGCAGGGTTCCGAATCCGGGGCCAA
G
BS11433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4545-PA | 1869 | SerT-RA | 985..1869 | 901..17 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-RB | 3725 | CG4545-RB | 1984..2868 | 901..17 | 4425 | 100 | Minus |
SerT-RA | 3183 | CG4545-RA | 1442..2326 | 901..17 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24406524..24406820 | 463..759 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 24405452..24405698 | 17..263 | 1235 | 100 | Plus |
2R | 25286936 | 2R | 24405757..24405957 | 263..463 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 24406931..24407075 | 757..901 | 725 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 12:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 519..561 | 877..833 | 112 | 75.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2481..2540 | 866..807 | 111 | 65 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2510 | 866..795 | 108 | 61.1 | Minus |
BS11433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:57 Download gff for
BS11433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-PA | 985..1869 | 17..901 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:26 Download gff for
BS11433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4545-PA | 985..1869 | 17..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:02:29 Download gff for
BS11433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 1442..2326 | 17..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:45 Download gff for
BS11433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 1442..2326 | 17..901 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:45 Download gff for
BS11433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24405452..24405697 | 17..262 | 100 | <- | Plus |
2R | 24405757..24405957 | 263..463 | 100 | <- | Plus |
2R | 24406525..24406819 | 464..758 | 100 | <- | Plus |
2R | 24406933..24407075 | 759..901 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:02:29 Download gff for
BS11433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20292975..20293220 | 17..262 | 100 | <- | Plus |
arm_2R | 20293280..20293480 | 263..463 | 100 | <- | Plus |
arm_2R | 20294048..20294342 | 464..758 | 100 | <- | Plus |
arm_2R | 20294456..20294598 | 759..901 | 100 | | Plus |
BS11433.5prime Sequence
942 bp (826 high quality bases) assembled on 2006-05-08
> BS11433.5prime
GAAGTTATCAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAG
CAGCTGCCACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAA
GAGTCGCCAAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACAC
GACGCCCGCCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACG
AGCGCATTCTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGA
CAGAAGGCGGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGG
CAATGTGTGGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCT
TCCTGGTGCCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTC
TACATGGAGCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCAT
CTGGAAGCGCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCC
TAATCGACATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCG
GTATACTACCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTG
CGATAATCCCTGGAACACTGAGAACTGCATGCAGGTGACCAGTGAGAACT
TCACGGAACTGGCCACGTCGCCGGCCAAGGAGTTCTTTGAGCGAAAGGTT
TTGGAGAGCTACAAGGGCAACGGGCTGGACTTCATGGGTCCGGTGAAGCC
CACGCTGGCACTCTGCGTCTTCGGGGTCTTTGTCCTGGTCTACTTCTCCC
TGTGGAAGGGAGTGCGCAGTGCCGGAAAGGTGGTGTGGGTCACCGCTCTG
GCTCCTTATGTGGTGCTAATCATCCTGCTGGGTAGAGGAGTTTCCCTGCC
CGGCGCGGACGAGGGCATCAAGTACTACCTAACCCCGGAGTG
BS11433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4545-PA | 1869 | SerT-RA | 1..926 | 17..942 | 4605 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-RB | 3725 | CG4545-RB | 1000..1925 | 17..942 | 4615 | 99.9 | Plus |
SerT-RA | 3183 | CG4545-RA | 458..1383 | 17..942 | 4615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24408962..24409241 | 480..201 | 1400 | 100 | Minus |
2R | 25286936 | 2R | 24407134..24407385 | 942..691 | 1245 | 99.6 | Minus |
2R | 25286936 | 2R | 24407441..24407654 | 691..478 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 24409387..24409572 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:31:02 has no hits.
BS11433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:58 Download gff for
BS11433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:28 Download gff for
BS11433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4545-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:57 Download gff for
BS11433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 452..1383 | 9..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:24 Download gff for
BS11433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 452..1383 | 9..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:24 Download gff for
BS11433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24407134..24407385 | 691..942 | 99 | <- | Minus |
2R | 24407442..24407652 | 480..690 | 100 | <- | Minus |
2R | 24408963..24409239 | 203..479 | 100 | <- | Minus |
2R | 24409387..24409578 | 9..202 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:57 Download gff for
BS11433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20294657..20294908 | 691..942 | 99 | <- | Minus |
arm_2R | 20294965..20295175 | 480..690 | 100 | <- | Minus |
arm_2R | 20296486..20296762 | 203..479 | 100 | <- | Minus |
arm_2R | 20296910..20297101 | 9..202 | 97 | | Minus |
BS11433.pep Sequence
Translation from 16 to 1884
> BS11433.pep
MDRSGSSDFAGAAATTGRSNPAPWSDDKESPNNEDDSNEDDGDHTTPAKV
TDPLAPKLANNERILVVSVTERTRETWGQKAEFLLAVIGFAVDLGNVWRF
PYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRIC
PALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWN
TENCMQVTSENFTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALC
VFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEG
IKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCY
RDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIV
YPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIG
RRRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEA
AGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMG
YKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRL
QESFQPEDNCGSVVPGQQGTSV*
BS11433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-PB | 622 | CG4545-PB | 1..622 | 1..622 | 3327 | 100 | Plus |
SerT-PA | 622 | CG4545-PA | 1..622 | 1..622 | 3327 | 100 | Plus |
DAT-PA | 631 | CG8380-PA | 27..589 | 74..599 | 1551 | 50.8 | Plus |
DAT-PB | 644 | CG8380-PB | 27..589 | 74..599 | 1551 | 50.8 | Plus |
CG1732-PA | 636 | CG1732-PA | 29..592 | 44..586 | 1316 | 43.3 | Plus |