Clone BS11433 Report

Search the DGRC for BS11433

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptSerT-RA
Protein status:BS11433.pep: full length peptide match
Sequenced Size:1901

Clone Sequence Records

BS11433.complete Sequence

1901 bp assembled on 2009-12-07

GenBank Submission: KX800678

> BS11433.complete
GAAGTTATCAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAG
CAGCTGCCACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAA
GAGTCGCCAAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACAC
GACGCCCGCCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACG
AGCGCATTCTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGA
CAGAAGGCGGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGG
CAATGTGTGGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCT
TCCTGGTGCCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTC
TACATGGAGCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCAT
CTGGAAGCGCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCC
TAATCGACATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCG
GTATACTACCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTG
CGATAATCCCTGGAACACTGAGAACTGCATGCAGGTGACCAGTGAGAACT
TCACGGAACTGGCCACGTCGCCGGCCAAGGAGTTCTTTGAGCGAAAGGTT
TTGGAGAGCTACAAGGGCAACGGGCTGGACTTCATGGGTCCGGTGAAGCC
CACGCTGGCACTCTGCGTCTTCGGGGTCTTTGTCCTGGTCTACTTCTCCC
TGTGGAAGGGAGTGCGCAGTGCCGGAAAGGTGGTGTGGGTCACCGCTCTG
GCTCCTTATGTGGTGCTAATCATCCTGCTGGTTAGAGGAGTTTCCCTGCC
CGGCGCGGACGAGGGCATCAAGTACTACCTAACCCCGGAGTGGCACAAAC
TGAAGAACTCCAAAGTCTGGATCGACGCCGCATCCCAGATTTTCTTCTCC
CTTGGCCCCGGATTCGGAACCCTGCTGGCCCTGTCCAGCTACAACAAGTT
CAACAACAACTGCTATCGCGATGCTCTCATCACCAGCAGCATCAACTGCT
TGACCAGTTTCCTGGCCGGCTTTGTCATCTTCTCCGTTTTGGGGTACATG
GCCTACGTCCAAAAGACCTCCATCGACAAGGTGGGCCTGGAGGGTCCGGG
GCTGGTGTTCATCGTTTACCCGGAGGCCATAGCCACGATGAGTGGCTCGG
TGTTCTGGAGCATCATCTTCTTCCTGATGCTGATTACCCTGGGACTGGAC
AGCACCTTTGGCGGATTGGAGGCGATGATAACAGCGCTGTGCGACGAGTA
TCCGCGAGTGATTGGCAGGCGCAGGGAGCTGTTCGTCCTGCTGCTCCTGG
CTTTCATCTTCCTGTGCGCCCTTCCCACGATGACCTACGGTGGCGTGGTG
CTGGTCAACTTCCTGAATGTCTACGGACCCGGGTTGGCCATCCTCTTTGT
GGTCTTCGTGGAGGCAGCCGGAGTCTTTTGGTTCTACGGAGTGGACCGCT
TCAGCTCGGATGTGGAACAGATGCTGGGCAGCAAGCCAGGCTTATTCTGG
CGGATCTGCTGGACGTACATCAGCCCTGTGTTCCTGCTGACCATATTCAT
TTTCTCCATCATGGGCTACAAGGAGATGCTCGGCGAGGAGTACTACTACC
CGGACTGGAGCTACCAGGTGGGCTGGGCGGTCACCTGCTCGTCGGTGCTC
TGCATCCCCATGTACATTATCTACAAGTTCTTCTTCGCCTCGAAAGGCGG
CTGCCGCCAGAGGCTGCAGGAGTCCTTCCAGCCGGAGGACAACTGCGGAT
CGGTGGTGCCCGGCCAACAGGGCACCTCGGTGTGAAAGCTTTCTAGACCA
T

BS11433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-RB 1869 CG4545-PB 1..1869 17..1885 9345 100 Plus
SerT-RA 1869 CG4545-PA 1..1869 17..1885 9345 100 Plus
ine-RF 2832 CG15444-PF 1729..1838 950..1059 190 78.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-RB 3725 CG4545-RB 1000..2868 17..1885 9345 100 Plus
SerT-RA 3183 CG4545-RA 458..2326 17..1885 9345 100 Plus
ine-RF 3436 CG15444-RF 2229..2338 950..1059 190 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24406931..24407385 1145..691 2275 100 Minus
2R 25286936 2R 24406524..24406820 1439..1143 1485 100 Minus
2R 25286936 2R 24408962..24409241 480..201 1400 100 Minus
2R 25286936 2R 24405452..24405698 1885..1639 1235 100 Minus
2R 25286936 2R 24407441..24407654 691..478 1070 100 Minus
2R 25286936 2R 24405757..24405957 1639..1439 1005 100 Minus
2R 25286936 2R 24409387..24409572 202..17 930 100 Minus
2L 23513712 2L 4469256..4469365 1059..950 190 78.2 Minus
Blast to na_te.dros performed on 2014-11-28 02:22:40 has no hits.

BS11433.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:03 Download gff for BS11433.complete
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 455..2322 17..1884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:47 Download gff for BS11433.complete
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 458..2325 17..1884 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:01 Download gff for BS11433.complete
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 455..2322 17..1884 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:10 Download gff for BS11433.complete
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 458..2325 17..1884 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:10 Download gff for BS11433.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24407442..24407652 480..690 100 <- Minus
2R 24408963..24409239 203..479 100 <- Minus
2R 24409387..24409572 17..202 100   Minus
2R 24405453..24405697 1640..1884 100 <- Minus
2R 24405757..24405957 1439..1639 100 <- Minus
2R 24406525..24406819 1144..1438 100 <- Minus
2R 24406933..24407385 691..1143 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:47 Download gff for BS11433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20292976..20293220 1640..1884 100 <- Minus
arm_2R 20293280..20293480 1439..1639 100 <- Minus
arm_2R 20294048..20294342 1144..1438 100 <- Minus
arm_2R 20294456..20294908 691..1143 100 <- Minus
arm_2R 20294965..20295175 480..690 100 <- Minus
arm_2R 20296486..20296762 203..479 100 <- Minus
arm_2R 20296910..20297095 17..202 100   Minus

BS11433.3prime Sequence

901 bp (884 high quality bases) assembled on 2006-05-08

> BS11433.3prime
ATGGTCTAGAAAGCTTTCACACCGAGGTGCCCTGTTGGCCGGGCACCACC
GATCCGCAGTTGTCCTCCGGCTGGAAGGACTCCTGCAGCCTCTGGCGGCA
GCCGCCTTTCGAGGCGAAGAAGAACTTGTAGATAATGTACATGGGGATGC
AGAGCACCGACGAGCAGGTGACCGCCCAGCCCACCTGGTAGCTCCAGTCC
GGGTAGTAGTACTCCTCGCCGAGCATCTCCTTGTAGCCCATGATGGAGAA
AATGAATATGGTCAGCAGGAACACAGGGCTGATGTACGTCCAGCAGATCC
GCCAGAATAAGCCTGGCTTGCTGCCCAGCATCTGTTCCACATCCGAGCTG
AAGCGGTCCACTCCGTAGAACCAAAAGACTCCGGCTGCCTCCACGAAGAC
CACAAAGAGGATGGCCAACCCGGGTCCGTAGACATTCAGGAAGTTGACCA
GCACCACGCCACCGTAGGTCATCGTGGGAAGGGCGCACAGGAAGATGAAA
GCCAGGAGCAGCAGGACGAACAGCTCCCTGCGCCTGCCAATCACTCGCGG
ATACTCGTCGCACAGCGCTGTTATCATCGCCTCCAATCCGCCAAAGGTGC
TGTCCAGTCCCAGGGTAATCAGCATCAGGAAGAAGATGATGCTCCAGAAC
ACCGAGCCACTCATCGTGGCTATGGCCTCCGGGTAAACGATGAACACCAG
CCCCGGACCCTCCAGGCCCACCTTGTCGATGGAGGTCTTTTGGACGTAGG
CCATGTACCCCAAAACGGAGAAGATGACAAAGCCGGCCAGGAAACTGGTC
AAGCAGTTGATGCTGCTGGTGATGAGAGCATCGCGATAGCAGTTGTTGTT
GAACTTGTTGTAGCTGGACAGGGCCAGCAGGGTTCCGAATCCGGGGCCAA
G

BS11433.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4545-PA 1869 SerT-RA 985..1869 901..17 4425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-RB 3725 CG4545-RB 1984..2868 901..17 4425 100 Minus
SerT-RA 3183 CG4545-RA 1442..2326 901..17 4425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24406524..24406820 463..759 1485 100 Plus
2R 25286936 2R 24405452..24405698 17..263 1235 100 Plus
2R 25286936 2R 24405757..24405957 263..463 1005 100 Plus
2R 25286936 2R 24406931..24407075 757..901 725 100 Plus
Blast to na_te.dros performed 2015-02-06 12:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 519..561 877..833 112 75.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2481..2540 866..807 111 65 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2510 866..795 108 61.1 Minus

BS11433.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:57 Download gff for BS11433.3prime
Subject Subject Range Query Range Percent Splice Strand
SerT-PA 985..1869 17..901 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:26 Download gff for BS11433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4545-PA 985..1869 17..901 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:02:29 Download gff for BS11433.3prime
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 1442..2326 17..901 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:45 Download gff for BS11433.3prime
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 1442..2326 17..901 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:45 Download gff for BS11433.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24405452..24405697 17..262 100 <- Plus
2R 24405757..24405957 263..463 100 <- Plus
2R 24406525..24406819 464..758 100 <- Plus
2R 24406933..24407075 759..901 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:02:29 Download gff for BS11433.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20292975..20293220 17..262 100 <- Plus
arm_2R 20293280..20293480 263..463 100 <- Plus
arm_2R 20294048..20294342 464..758 100 <- Plus
arm_2R 20294456..20294598 759..901 100   Plus

BS11433.5prime Sequence

942 bp (826 high quality bases) assembled on 2006-05-08

> BS11433.5prime
GAAGTTATCAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAG
CAGCTGCCACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAA
GAGTCGCCAAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACAC
GACGCCCGCCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACG
AGCGCATTCTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGA
CAGAAGGCGGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGG
CAATGTGTGGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCT
TCCTGGTGCCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTC
TACATGGAGCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCAT
CTGGAAGCGCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCC
TAATCGACATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCG
GTATACTACCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTG
CGATAATCCCTGGAACACTGAGAACTGCATGCAGGTGACCAGTGAGAACT
TCACGGAACTGGCCACGTCGCCGGCCAAGGAGTTCTTTGAGCGAAAGGTT
TTGGAGAGCTACAAGGGCAACGGGCTGGACTTCATGGGTCCGGTGAAGCC
CACGCTGGCACTCTGCGTCTTCGGGGTCTTTGTCCTGGTCTACTTCTCCC
TGTGGAAGGGAGTGCGCAGTGCCGGAAAGGTGGTGTGGGTCACCGCTCTG
GCTCCTTATGTGGTGCTAATCATCCTGCTGGGTAGAGGAGTTTCCCTGCC
CGGCGCGGACGAGGGCATCAAGTACTACCTAACCCCGGAGTG

BS11433.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4545-PA 1869 SerT-RA 1..926 17..942 4605 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-RB 3725 CG4545-RB 1000..1925 17..942 4615 99.9 Plus
SerT-RA 3183 CG4545-RA 458..1383 17..942 4615 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24408962..24409241 480..201 1400 100 Minus
2R 25286936 2R 24407134..24407385 942..691 1245 99.6 Minus
2R 25286936 2R 24407441..24407654 691..478 1070 100 Minus
2R 25286936 2R 24409387..24409572 202..17 930 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:31:02 has no hits.

BS11433.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:58 Download gff for BS11433.5prime
Subject Subject Range Query Range Percent Splice Strand
SerT-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:28 Download gff for BS11433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4545-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:57 Download gff for BS11433.5prime
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 452..1383 9..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:24 Download gff for BS11433.5prime
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 452..1383 9..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:24 Download gff for BS11433.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24407134..24407385 691..942 99 <- Minus
2R 24407442..24407652 480..690 100 <- Minus
2R 24408963..24409239 203..479 100 <- Minus
2R 24409387..24409578 9..202 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:57 Download gff for BS11433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20294657..20294908 691..942 99 <- Minus
arm_2R 20294965..20295175 480..690 100 <- Minus
arm_2R 20296486..20296762 203..479 100 <- Minus
arm_2R 20296910..20297101 9..202 97   Minus

BS11433.pep Sequence

Translation from 16 to 1884

> BS11433.pep
MDRSGSSDFAGAAATTGRSNPAPWSDDKESPNNEDDSNEDDGDHTTPAKV
TDPLAPKLANNERILVVSVTERTRETWGQKAEFLLAVIGFAVDLGNVWRF
PYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRIC
PALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWN
TENCMQVTSENFTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALC
VFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEG
IKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCY
RDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIV
YPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIG
RRRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEA
AGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMG
YKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRL
QESFQPEDNCGSVVPGQQGTSV*

BS11433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-PB 622 CG4545-PB 1..622 1..622 3327 100 Plus
SerT-PA 622 CG4545-PA 1..622 1..622 3327 100 Plus
DAT-PA 631 CG8380-PA 27..589 74..599 1551 50.8 Plus
DAT-PB 644 CG8380-PB 27..589 74..599 1551 50.8 Plus
CG1732-PA 636 CG1732-PA 29..592 44..586 1316 43.3 Plus