Clone Sequence Records
BS11434.3prime Sequence
417 bp (416 high quality bases) assembled on 2006-05-08
> BS11434.3prime
ATGGTCTAGAAAGCTTCTACTTCAACTTCTTCTTGGGGCGCAGGTTGTTG
GTGTGTCCGCACTTCTTCTTGCGGCAGTTGGTGGCACGAGGATGCAGACG
GGCGTAGCACTTGCGGCAGATCATCTTGTCGCAGTTGTACTTCTGGGCCA
GAATCCTGAGCGAGGGCTCAATGATACCACCACGCAGGCGGAGCACCAAG
TGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATC
CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGC
CCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGC
TCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTG
CATGTCGACTGATAACT
BS11434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2960-PA | 387 | RpL40-RA | 1..387 | 403..17 | 1935 | 100 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 709..914 | 379..174 | 530 | 90.2 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1393..1598 | 379..174 | 530 | 90.2 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1849..2054 | 379..174 | 530 | 90.2 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 709..914 | 379..174 | 530 | 90.2 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1393..1598 | 379..174 | 530 | 90.2 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1849..2054 | 379..174 | 530 | 90.2 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1849..2054 | 379..174 | 530 | 90.2 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 709..914 | 379..174 | 530 | 90.2 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1393..1598 | 379..174 | 530 | 90.2 | Minus |
| CG32744-PA | 1605 | CG32744-RA | 228..455 | 404..177 | 515 | 89 | Minus |
| CG32744-PA | 1605 | CG32744-RA | 1368..1595 | 404..177 | 490 | 88.5 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 481..686 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 937..1142 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1165..1370 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1621..1826 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 2077..2267 | 379..189 | 480 | 90 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 2077..2267 | 379..189 | 480 | 90 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 481..686 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 937..1142 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1165..1370 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1621..1826 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 2077..2267 | 379..189 | 480 | 90 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 481..686 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 937..1142 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1165..1370 | 379..174 | 480 | 89.3 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1621..1826 | 379..174 | 480 | 89.3 | Minus |
| CG32744-PA | 1605 | CG32744-RA | 456..665 | 404..195 | 475 | 89 | Minus |
| CG32744-PA | 1605 | CG32744-RA | 684..893 | 404..195 | 475 | 89 | Minus |
| CG32744-PA | 1605 | CG32744-RA | 1140..1349 | 404..195 | 475 | 89 | Minus |
| CG32744-PA | 1605 | CG32744-RA | 19..227 | 385..177 | 470 | 88.9 | Minus |
| CG32744-PA | 1605 | CG32744-RA | 912..1139 | 404..177 | 465 | 88.1 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 25..230 | 379..174 | 455 | 88.8 | Minus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 253..458 | 379..174 | 455 | 88.8 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 25..230 | 379..174 | 455 | 88.8 | Minus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 253..458 | 379..174 | 455 | 88.8 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 25..230 | 379..174 | 455 | 88.8 | Minus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 253..458 | 379..174 | 455 | 88.8 | Minus |
| CG5271-PA | 471 | RpS27A-RA | 106..228 | 298..176 | 390 | 92.6 | Minus |
| CG11700-PA | 906 | CG11700-RA | 553..683 | 307..177 | 255 | 87.7 | Minus |
| CG11700-PA | 906 | CG11700-RA | 793..884 | 295..204 | 235 | 90.2 | Minus |
| CG11700-PA | 906 | CG11700-RA | 228..331 | 404..301 | 195 | 87.5 | Minus |
| CG11700-PA | 906 | CG11700-RA | 1..103 | 403..301 | 190 | 87.3 | Minus |
| CG11700-PA | 906 | CG11700-RA | 456..512 | 404..348 | 185 | 92.9 | Minus |
| CG11700-PA | 906 | CG11700-RA | 684..740 | 404..348 | 185 | 92.9 | Minus |
| CG11700-PA | 906 | CG11700-RA | 160..194 | 244..210 | 150 | 97.1 | Minus |
| CG11700-PA | 906 | CG11700-RA | 388..422 | 244..210 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL40-RB | 659 | CG2960-RB | 123..510 | 403..16 | 1940 | 100 | Minus |
| RpL40-RA | 587 | CG2960-RA | 65..452 | 403..16 | 1940 | 100 | Minus |
| Ubi-p63E-RD | 2624 | CG11624-RD | 808..1037 | 403..174 | 790 | 89.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4228025..4228412 | 403..16 | 1940 | 100 | Minus |
| 3L | 28110227 | 3L | 3899706..3899935 | 174..403 | 790 | 89.6 | Plus |
| 3L | 28110227 | 3L | 3900162..3900391 | 174..403 | 790 | 89.6 | Plus |
| 3L | 28110227 | 3L | 3900846..3901075 | 174..403 | 790 | 89.6 | Plus |
| X | 23542271 | X | 6278294..6278521 | 177..404 | 765 | 89 | Plus |
| 3L | 28110227 | 3L | 3899934..3900163 | 174..403 | 760 | 88.7 | Plus |
| 3L | 28110227 | 3L | 3900390..3900619 | 174..403 | 760 | 88.7 | Plus |
| 3L | 28110227 | 3L | 3900618..3900847 | 174..403 | 760 | 88.7 | Plus |
| 3L | 28110227 | 3L | 3901074..3901303 | 174..403 | 760 | 88.7 | Plus |
| 3L | 28110227 | 3L | 3899477..3899707 | 173..403 | 750 | 88.3 | Plus |
| 3L | 28110227 | 3L | 3901302..3901531 | 174..403 | 745 | 88.3 | Plus |
| 3L | 28110227 | 3L | 3901530..3901759 | 174..403 | 730 | 87.8 | Plus |
| 2L | 23513712 | 2L | 10409731..10409958 | 403..176 | 705 | 87.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:41:55 has no hits.
BS11434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:08:59 Download gff for
BS11434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-PA | 1..387 | 17..403 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:29 Download gff for
BS11434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2960-PA | 1..387 | 17..403 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:02:58 Download gff for
BS11434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-RA | 65..454 | 12..403 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:27 Download gff for
BS11434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-RA | 65..454 | 12..403 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:27 Download gff for
BS11434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4228025..4228414 | 12..403 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:02:58 Download gff for
BS11434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4228025..4228414 | 12..403 | 99 | | Minus |
BS11434.5prime Sequence
417 bp (416 high quality bases) assembled on 2006-05-08
> BS11434.5prime
GAAGTTATCAGTCGACATGCAGATCTTCGTGAAAACCCTCACCGGCAAGA
CCATCACCTTGGAGGTGGAGCCTTCTGACACCATCGAGAATGTCAAGGCT
AAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTT
CGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTC
AGAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTATCATT
GAGCCCTCGCTCAGGATTCTGGCCCAGAAGTACAACTGCGACAAGATGAT
CTGCCGCAAGTGCTACGCCCGTCTGCATCCTCGTGCCACCAACTGCCGCA
AGAAGAAGTGCGGACACACCAACAACCTGCGCCCCAAGAAGAAGTTGAAG
TAGAAGCTTTCTAGACC
BS11434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2960-PA | 387 | RpL40-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 709..914 | 41..246 | 530 | 90.2 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1393..1598 | 41..246 | 530 | 90.2 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1849..2054 | 41..246 | 530 | 90.2 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 709..914 | 41..246 | 530 | 90.2 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1393..1598 | 41..246 | 530 | 90.2 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1849..2054 | 41..246 | 530 | 90.2 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 709..914 | 41..246 | 530 | 90.2 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1393..1598 | 41..246 | 530 | 90.2 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1849..2054 | 41..246 | 530 | 90.2 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 228..455 | 16..243 | 515 | 89 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 1368..1595 | 16..243 | 490 | 88.5 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 2077..2267 | 41..231 | 480 | 90 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 481..686 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 937..1142 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1165..1370 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1621..1826 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 2077..2267 | 41..231 | 480 | 90 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 481..686 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 937..1142 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1165..1370 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1621..1826 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 2077..2267 | 41..231 | 480 | 90 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 481..686 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 937..1142 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1165..1370 | 41..246 | 480 | 89.3 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1621..1826 | 41..246 | 480 | 89.3 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 456..665 | 16..225 | 475 | 89 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 684..893 | 16..225 | 475 | 89 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 1140..1349 | 16..225 | 475 | 89 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 19..227 | 35..243 | 470 | 88.9 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 912..1139 | 16..243 | 465 | 88.1 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 25..230 | 41..246 | 455 | 88.8 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 253..458 | 41..246 | 455 | 88.8 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 25..230 | 41..246 | 455 | 88.8 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 253..458 | 41..246 | 455 | 88.8 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 25..230 | 41..246 | 455 | 88.8 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 253..458 | 41..246 | 455 | 88.8 | Plus |
| CG5271-PA | 471 | RpS27A-RA | 106..228 | 122..244 | 390 | 92.6 | Plus |
| CG11700-PA | 906 | CG11700-RA | 553..683 | 113..243 | 255 | 87.7 | Plus |
| CG11700-PA | 906 | CG11700-RA | 793..884 | 125..216 | 235 | 90.2 | Plus |
| CG11700-PA | 906 | CG11700-RA | 228..331 | 16..119 | 195 | 87.5 | Plus |
| CG11700-PA | 906 | CG11700-RA | 1..103 | 17..119 | 190 | 87.3 | Plus |
| CG11700-PA | 906 | CG11700-RA | 456..512 | 16..72 | 185 | 92.9 | Plus |
| CG11700-PA | 906 | CG11700-RA | 684..740 | 16..72 | 185 | 92.9 | Plus |
| CG11700-PA | 906 | CG11700-RA | 388..422 | 176..210 | 150 | 97.1 | Plus |
| CG11700-PA | 906 | CG11700-RA | 160..194 | 176..210 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL40-RB | 659 | CG2960-RB | 123..510 | 17..404 | 1940 | 100 | Plus |
| RpL40-RA | 587 | CG2960-RA | 65..452 | 17..404 | 1940 | 100 | Plus |
| Ubi-p63E-RD | 2624 | CG11624-RD | 808..1037 | 17..246 | 790 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4228025..4228412 | 17..404 | 1940 | 100 | Plus |
| 3L | 28110227 | 3L | 3899706..3899935 | 246..17 | 790 | 89.6 | Minus |
| 3L | 28110227 | 3L | 3900162..3900391 | 246..17 | 790 | 89.6 | Minus |
| 3L | 28110227 | 3L | 3900846..3901075 | 246..17 | 790 | 89.6 | Minus |
| X | 23542271 | X | 6278294..6278521 | 243..16 | 765 | 89 | Minus |
| 3L | 28110227 | 3L | 3899934..3900163 | 246..17 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3901074..3901303 | 246..17 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3900390..3900619 | 246..17 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3900618..3900847 | 246..17 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3899477..3899707 | 247..17 | 750 | 88.3 | Minus |
| 3L | 28110227 | 3L | 3901302..3901531 | 246..17 | 745 | 88.3 | Minus |
| 3L | 28110227 | 3L | 3901530..3901759 | 246..17 | 730 | 87.8 | Minus |
| 2L | 23513712 | 2L | 10409731..10409958 | 17..244 | 705 | 87.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:16:10 has no hits.
BS11434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:00 Download gff for
BS11434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-PA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:31 Download gff for
BS11434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2960-PA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:54 Download gff for
BS11434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-RA | 65..454 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:02:49 Download gff for
BS11434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-RA | 65..454 | 17..408 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:02:49 Download gff for
BS11434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4228025..4228414 | 17..408 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:54 Download gff for
BS11434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4228025..4228414 | 17..408 | 99 | | Plus |
BS11434.complete Sequence
419 bp assembled on 2006-11-01
GenBank Submission: FJ636865
> BS11434.complete
GAAGTTATCAGTCGACATGCAGATCTTCGTGAAAACCCTCACCGGCAAGA
CCATCACCTTGGAGGTGGAGCCTTCTGACACCATCGAGAATGTCAAGGCT
AAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTT
CGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTC
AGAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTATCATT
GAGCCCTCGCTCAGGATTCTGGCCCAGAAGTACAACTGCGACAAGATGAT
CTGCCGCAAGTGCTACGCCCGTCTGCATCCTCGTGCCACCAACTGCCGCA
AGAAGAAGTGCGGACACACCAACAACCTGCGCCCCAAGAAGAAGTTGAAG
TAGAAGCTTTCTAGACCAT
BS11434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL40-RB | 387 | CG2960-PB | 1..387 | 17..403 | 1935 | 100 | Plus |
| RpL40-RA | 387 | CG2960-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
| Ubi-p63E-RD | 2292 | CG11624-PD | 685..914 | 17..246 | 790 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL40-RB | 659 | CG2960-RB | 123..510 | 17..404 | 1940 | 100 | Plus |
| RpL40-RA | 587 | CG2960-RA | 65..452 | 17..404 | 1940 | 100 | Plus |
| Ubi-p63E-RD | 2624 | CG11624-RD | 808..1037 | 17..246 | 790 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4228025..4228412 | 17..404 | 1940 | 100 | Plus |
| 3L | 28110227 | 3L | 3899706..3899935 | 246..17 | 790 | 89.6 | Minus |
| 3L | 28110227 | 3L | 3900162..3900391 | 246..17 | 790 | 89.6 | Minus |
| 3L | 28110227 | 3L | 3900846..3901075 | 246..17 | 790 | 89.6 | Minus |
| X | 23542271 | X | 6278294..6278521 | 243..16 | 765 | 89 | Minus |
| 3L | 28110227 | 3L | 3899934..3900163 | 246..17 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3900390..3900619 | 246..17 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3900618..3900847 | 246..17 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3901074..3901303 | 246..17 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3899477..3899707 | 247..17 | 750 | 88.3 | Minus |
| X | 23542271 | X | 6277154..6277381 | 243..16 | 750 | 88.6 | Minus |
| 3L | 28110227 | 3L | 3901302..3901531 | 246..17 | 745 | 88.3 | Minus |
| X | 23542271 | X | 6277382..6277609 | 243..16 | 735 | 88.2 | Minus |
| X | 23542271 | X | 6277610..6277837 | 243..16 | 735 | 88.2 | Minus |
| X | 23542271 | X | 6277838..6278065 | 243..16 | 735 | 88.2 | Minus |
| X | 23542271 | X | 6278066..6278293 | 243..16 | 735 | 88.2 | Minus |
| 3L | 28110227 | 3L | 3901530..3901759 | 246..17 | 730 | 87.8 | Minus |
| X | 23542271 | X | 6278522..6278748 | 243..17 | 730 | 88.1 | Minus |
| 2L | 23513712 | 2L | 10409731..10409958 | 17..244 | 705 | 87.3 | Plus |
| X | 23542271 | X | 6282501..6282728 | 243..16 | 660 | 86 | Minus |
| X | 23542271 | X | 6282729..6282956 | 243..16 | 630 | 85.1 | Minus |
| X | 23542271 | X | 6282957..6283184 | 243..16 | 630 | 85.1 | Minus |
| X | 23542271 | X | 6282296..6282500 | 220..16 | 590 | 85.9 | Minus |
| X | 23542271 | X | 6280764..6280882 | 135..17 | 250 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:39:27 has no hits.
BS11434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:50:56 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-11 03:26:04 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:48 Download gff for
BS11434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-RA | 65..451 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:50:56 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:44 Download gff for
BS11434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-RA | 65..451 | 17..403 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:44 Download gff for
BS11434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4228025..4228411 | 17..403 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:48 Download gff for
BS11434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4228025..4228411 | 17..403 | 100 | | Plus |
BS11434.pep Sequence
Translation from 16 to 402
> BS11434.pep
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCY
ARLHPRATNCRKKKCGHTNNLRPKKKLK*
BS11434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL40-PB | 128 | CG2960-PB | 1..128 | 1..128 | 670 | 100 | Plus |
| RpL40-PA | 128 | CG2960-PA | 1..128 | 1..128 | 670 | 100 | Plus |
| Ubi-p5E-PB | 534 | CG32744-PB | 457..534 | 1..78 | 384 | 98.7 | Plus |
| Ubi-p5E-PA | 534 | CG32744-PA | 457..534 | 1..78 | 384 | 98.7 | Plus |
| Ubi-p5E-PB | 534 | CG32744-PB | 1..77 | 1..77 | 382 | 98.7 | Plus |
| Ubi-p5E-PB | 534 | CG32744-PB | 77..153 | 1..77 | 382 | 98.7 | Plus |
| Ubi-p5E-PB | 534 | CG32744-PB | 153..229 | 1..77 | 382 | 98.7 | Plus |
| Ubi-p5E-PB | 534 | CG32744-PB | 229..305 | 1..77 | 382 | 98.7 | Plus |
| Ubi-p5E-PB | 534 | CG32744-PB | 305..381 | 1..77 | 382 | 98.7 | Plus |
| Ubi-p5E-PB | 534 | CG32744-PB | 381..457 | 1..77 | 382 | 98.7 | Plus |
| RpS27A-PA | 156 | CG5271-PA | 1..76 | 1..76 | 381 | 100 | Plus |
