Clone BS11435 Report

Search the DGRC for BS11435

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptor-RA
Protein status:BS11435.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11435.3prime Sequence

606 bp (605 high quality bases) assembled on 2006-05-08

> BS11435.3prime
ATGGTCTAGAAAGCTTTCAGAACTTAAAGTCCTTAATGGCCTGCGGCAGA
TCAGGTAGCTTGATGTCTTTAATCTGTTGCGGAATGTTCATACTCTTCAC
GGCGCTCACAGCTCGGGCAGGTGCAGCCGAGATGCCCGCTTCCTGCTTGA
CGATCTTGTTCTGCTCCTCGATCCTGGCCATTATGTCGTTCATATTTGTC
TGCAGGACCATTCCGCCCATTACCAGTTCTGAGAGGATGTGGTGGACGGC
ATCGGCGTGGAATATCAGGTCCAGCTCACACACGTTTTCGAAGCACTTGT
CGAGGGTTTCCACGAACACCTGAATCAGGTCCAGGATTCCCAGTTCGCTC
TCCGAGGAGTCCACGCAGAAAACGAAGTACAGCGTGGCATAGTGTCTGTA
GATGAGTTTGTAATCCGATCCGCCAATCAAACTTCCGCCCTCCAGAAAGT
TGCAAACATTATCGTCCCGCTTGGACACCAATTGGAAAGTCTCTTTGATT
ATTTGTTGCTGCAGGCTTTCATCGAAATACTGATAGAACTTCGATAGCCG
CGGCTTCCCGTGATTGTTAAAAACGAGAATGGCTTTTATCATGTCGACTG
ATAACT

BS11435.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3029-PA 576 or-RA 1..576 592..17 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
or-RA 823 CG3029-RA 75..657 599..17 2885 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23968562..23968777 232..17 1080 100 Minus
2R 25286936 2R 23968304..23968508 433..229 1025 100 Minus
2R 25286936 2R 23968153..23968244 523..432 460 100 Minus
2R 25286936 2R 23968013..23968089 599..523 355 97.4 Minus
Blast to na_te.dros performed on 2015-02-08 13:02:55 has no hits.

BS11435.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:09:02 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:33 Download gff for BS11435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3029-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:29 Download gff for BS11435.3prime
Subject Subject Range Query Range Percent Splice Strand
or-RA 70..657 17..604 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:37 Download gff for BS11435.3prime
Subject Subject Range Query Range Percent Splice Strand
or-RA 70..657 17..604 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:37 Download gff for BS11435.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23968153..23968244 432..523 100 -> Minus
2R 23968008..23968088 524..604 95 -> Minus
2R 23968306..23968508 229..431 100 -> Minus
2R 23968566..23968777 17..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:29 Download gff for BS11435.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19855531..19855611 524..604 95 -> Minus
arm_2R 19855676..19855767 432..523 100 -> Minus
arm_2R 19855829..19856031 229..431 100 -> Minus
arm_2R 19856089..19856300 17..228 100   Minus

BS11435.5prime Sequence

606 bp (605 high quality bases) assembled on 2006-05-08

> BS11435.5prime
GAAGTTATCAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATCACG
GGAAGCCGCGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTGCAG
CAACAAATAATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGATAA
TGTTTGCAACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATTACA
AACTCATCTACAGACACTATGCCACGCTGTACTTCGTTTTCTGCGTGGAC
TCCTCGGAGAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGTGGA
AACCCTCGACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATATTCC
ACGCCGATGCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGAATG
GTCCTGCAGACAAATATGAACGACATAATGGCCAGGATCGAGGAGCAGAA
CAAGATCGTCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTG
TGAGCGCCGTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATCAAG
CTACCTGATCTGCCGCAGGCCATTAAGGACTTTAAGTTCTGAAAGCTTTC
TAGACC

BS11435.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3029-PA 576 or-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
or-RA 823 CG3029-RA 75..657 10..592 2885 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23968562..23968777 377..592 1080 100 Plus
2R 25286936 2R 23968304..23968508 176..380 1025 100 Plus
2R 25286936 2R 23968153..23968244 86..177 460 100 Plus
2R 25286936 2R 23968013..23968089 10..86 355 97.4 Plus
Blast to na_te.dros performed on 2015-02-11 23:36:36 has no hits.

BS11435.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:09:03 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:35 Download gff for BS11435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3029-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:25 Download gff for BS11435.5prime
Subject Subject Range Query Range Percent Splice Strand
or-RA 70..657 5..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:25 Download gff for BS11435.5prime
Subject Subject Range Query Range Percent Splice Strand
or-RA 70..657 5..592 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:25 Download gff for BS11435.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23968008..23968088 5..85 95 -> Plus
2R 23968153..23968244 86..177 100 -> Plus
2R 23968306..23968508 178..380 100 -> Plus
2R 23968566..23968777 381..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:25 Download gff for BS11435.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19855531..19855611 5..85 95 -> Plus
arm_2R 19855676..19855767 86..177 100 -> Plus
arm_2R 19855829..19856031 178..380 100 -> Plus
arm_2R 19856089..19856300 381..592 100   Plus

BS11435.complete Sequence

608 bp assembled on 2006-11-01

GenBank Submission: FJ636866

> BS11435.complete
GAAGTTATCAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATCACG
GGAAGCCGCGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTGCAG
CAACAAATAATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGATAA
TGTTTGCAACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATTACA
AACTCATCTACAGACACTATGCCACGCTGTACTTCGTTTTCTGCGTGGAC
TCCTCGGAGAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGTGGA
AACCCTCGACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATATTCC
ACGCCGATGCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGAATG
GTCCTGCAGACAAATATGAACGACATAATGGCCAGGATCGAGGAGCAGAA
CAAGATCGTCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTG
TGAGCGCCGTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATCAAG
CTACCTGATCTGCCGCAGGCCATTAAGGACTTTAAGTTCTGAAAGCTTTC
TAGACCAT

BS11435.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
or-RA 576 CG3029-PA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
or-RA 823 CG3029-RA 75..657 10..592 2885 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23968562..23968777 377..592 1080 100 Plus
2R 25286936 2R 23968304..23968508 176..380 1025 100 Plus
2R 25286936 2R 23968153..23968244 86..177 460 100 Plus
2R 25286936 2R 23968013..23968089 10..86 355 97.4 Plus
Blast to na_te.dros performed on 2014-11-26 22:04:22 has no hits.

BS11435.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:56 Download gff for BS11435.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:56 Download gff for BS11435.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 65..652 5..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:47 Download gff for BS11435.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 82..656 17..591 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:56 Download gff for BS11435.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 65..652 5..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:24 Download gff for BS11435.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 82..656 17..591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:24 Download gff for BS11435.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23968020..23968088 17..85 100 -> Plus
2R 23968153..23968244 86..177 100 -> Plus
2R 23968306..23968508 178..380 100 -> Plus
2R 23968566..23968776 381..591 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:47 Download gff for BS11435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19855543..19855611 17..85 100 -> Plus
arm_2R 19855676..19855767 86..177 100 -> Plus
arm_2R 19855829..19856031 178..380 100 -> Plus
arm_2R 19856089..19856299 381..591 100   Plus

BS11435.pep Sequence

Translation from 16 to 591

> BS11435.pep
MIKAILVFNNHGKPRLSKFYQYFDESLQQQIIKETFQLVSKRDDNVCNFL
EGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKC
FENVCELDLIFHADAVHHILSELVMGGMVLQTNMNDIMARIEEQNKIVKQ
EAGISAAPARAVSAVKSMNIPQQIKDIKLPDLPQAIKDFKF*

BS11435.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
or-PA 191 CG3029-PA 1..191 1..191 976 100 Plus
AP-2sigma-PA 142 CG6056-PA 1..141 1..147 269 36.7 Plus
AP-1sigma-PD 152 CG5864-PD 1..145 1..151 267 34.4 Plus
AP-1sigma-PC 157 CG5864-PC 1..146 1..152 266 34.2 Plus
AP-1sigma-PB 157 CG5864-PB 1..146 1..152 266 34.2 Plus