Clone Sequence Records
BS11435.3prime Sequence
606 bp (605 high quality bases) assembled on 2006-05-08
> BS11435.3prime
ATGGTCTAGAAAGCTTTCAGAACTTAAAGTCCTTAATGGCCTGCGGCAGA
TCAGGTAGCTTGATGTCTTTAATCTGTTGCGGAATGTTCATACTCTTCAC
GGCGCTCACAGCTCGGGCAGGTGCAGCCGAGATGCCCGCTTCCTGCTTGA
CGATCTTGTTCTGCTCCTCGATCCTGGCCATTATGTCGTTCATATTTGTC
TGCAGGACCATTCCGCCCATTACCAGTTCTGAGAGGATGTGGTGGACGGC
ATCGGCGTGGAATATCAGGTCCAGCTCACACACGTTTTCGAAGCACTTGT
CGAGGGTTTCCACGAACACCTGAATCAGGTCCAGGATTCCCAGTTCGCTC
TCCGAGGAGTCCACGCAGAAAACGAAGTACAGCGTGGCATAGTGTCTGTA
GATGAGTTTGTAATCCGATCCGCCAATCAAACTTCCGCCCTCCAGAAAGT
TGCAAACATTATCGTCCCGCTTGGACACCAATTGGAAAGTCTCTTTGATT
ATTTGTTGCTGCAGGCTTTCATCGAAATACTGATAGAACTTCGATAGCCG
CGGCTTCCCGTGATTGTTAAAAACGAGAATGGCTTTTATCATGTCGACTG
ATAACT
BS11435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3029-PA | 576 | or-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-RA | 823 | CG3029-RA | 75..657 | 599..17 | 2885 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23968562..23968777 | 232..17 | 1080 | 100 | Minus |
2R | 25286936 | 2R | 23968304..23968508 | 433..229 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 23968153..23968244 | 523..432 | 460 | 100 | Minus |
2R | 25286936 | 2R | 23968013..23968089 | 599..523 | 355 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:02:55 has no hits.
BS11435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:09:02 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:33 Download gff for
BS11435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3029-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:29 Download gff for
BS11435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 70..657 | 17..604 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:37 Download gff for
BS11435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 70..657 | 17..604 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:37 Download gff for
BS11435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23968153..23968244 | 432..523 | 100 | -> | Minus |
2R | 23968008..23968088 | 524..604 | 95 | -> | Minus |
2R | 23968306..23968508 | 229..431 | 100 | -> | Minus |
2R | 23968566..23968777 | 17..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:29 Download gff for
BS11435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19855531..19855611 | 524..604 | 95 | -> | Minus |
arm_2R | 19855676..19855767 | 432..523 | 100 | -> | Minus |
arm_2R | 19855829..19856031 | 229..431 | 100 | -> | Minus |
arm_2R | 19856089..19856300 | 17..228 | 100 | | Minus |
BS11435.5prime Sequence
606 bp (605 high quality bases) assembled on 2006-05-08
> BS11435.5prime
GAAGTTATCAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATCACG
GGAAGCCGCGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTGCAG
CAACAAATAATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGATAA
TGTTTGCAACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATTACA
AACTCATCTACAGACACTATGCCACGCTGTACTTCGTTTTCTGCGTGGAC
TCCTCGGAGAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGTGGA
AACCCTCGACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATATTCC
ACGCCGATGCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGAATG
GTCCTGCAGACAAATATGAACGACATAATGGCCAGGATCGAGGAGCAGAA
CAAGATCGTCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTG
TGAGCGCCGTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATCAAG
CTACCTGATCTGCCGCAGGCCATTAAGGACTTTAAGTTCTGAAAGCTTTC
TAGACC
BS11435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3029-PA | 576 | or-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-RA | 823 | CG3029-RA | 75..657 | 10..592 | 2885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23968562..23968777 | 377..592 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 23968304..23968508 | 176..380 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 23968153..23968244 | 86..177 | 460 | 100 | Plus |
2R | 25286936 | 2R | 23968013..23968089 | 10..86 | 355 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:36:36 has no hits.
BS11435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:09:03 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:35 Download gff for
BS11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3029-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:25 Download gff for
BS11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 70..657 | 5..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:25 Download gff for
BS11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 70..657 | 5..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:25 Download gff for
BS11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23968008..23968088 | 5..85 | 95 | -> | Plus |
2R | 23968153..23968244 | 86..177 | 100 | -> | Plus |
2R | 23968306..23968508 | 178..380 | 100 | -> | Plus |
2R | 23968566..23968777 | 381..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:25 Download gff for
BS11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19855531..19855611 | 5..85 | 95 | -> | Plus |
arm_2R | 19855676..19855767 | 86..177 | 100 | -> | Plus |
arm_2R | 19855829..19856031 | 178..380 | 100 | -> | Plus |
arm_2R | 19856089..19856300 | 381..592 | 100 | | Plus |
BS11435.complete Sequence
608 bp assembled on 2006-11-01
GenBank Submission: FJ636866
> BS11435.complete
GAAGTTATCAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATCACG
GGAAGCCGCGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTGCAG
CAACAAATAATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGATAA
TGTTTGCAACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATTACA
AACTCATCTACAGACACTATGCCACGCTGTACTTCGTTTTCTGCGTGGAC
TCCTCGGAGAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGTGGA
AACCCTCGACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATATTCC
ACGCCGATGCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGAATG
GTCCTGCAGACAAATATGAACGACATAATGGCCAGGATCGAGGAGCAGAA
CAAGATCGTCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTG
TGAGCGCCGTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATCAAG
CTACCTGATCTGCCGCAGGCCATTAAGGACTTTAAGTTCTGAAAGCTTTC
TAGACCAT
BS11435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-RA | 576 | CG3029-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-RA | 823 | CG3029-RA | 75..657 | 10..592 | 2885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23968562..23968777 | 377..592 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 23968304..23968508 | 176..380 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 23968153..23968244 | 86..177 | 460 | 100 | Plus |
2R | 25286936 | 2R | 23968013..23968089 | 10..86 | 355 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:04:22 has no hits.
BS11435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:56 Download gff for
BS11435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:56 Download gff for
BS11435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 65..652 | 5..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:47 Download gff for
BS11435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 82..656 | 17..591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:56 Download gff for
BS11435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 65..652 | 5..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:24 Download gff for
BS11435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 82..656 | 17..591 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:24 Download gff for
BS11435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23968020..23968088 | 17..85 | 100 | -> | Plus |
2R | 23968153..23968244 | 86..177 | 100 | -> | Plus |
2R | 23968306..23968508 | 178..380 | 100 | -> | Plus |
2R | 23968566..23968776 | 381..591 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:47 Download gff for
BS11435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19855543..19855611 | 17..85 | 100 | -> | Plus |
arm_2R | 19855676..19855767 | 86..177 | 100 | -> | Plus |
arm_2R | 19855829..19856031 | 178..380 | 100 | -> | Plus |
arm_2R | 19856089..19856299 | 381..591 | 100 | | Plus |
BS11435.pep Sequence
Translation from 16 to 591
> BS11435.pep
MIKAILVFNNHGKPRLSKFYQYFDESLQQQIIKETFQLVSKRDDNVCNFL
EGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKC
FENVCELDLIFHADAVHHILSELVMGGMVLQTNMNDIMARIEEQNKIVKQ
EAGISAAPARAVSAVKSMNIPQQIKDIKLPDLPQAIKDFKF*
BS11435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-PA | 191 | CG3029-PA | 1..191 | 1..191 | 976 | 100 | Plus |
AP-2sigma-PA | 142 | CG6056-PA | 1..141 | 1..147 | 269 | 36.7 | Plus |
AP-1sigma-PD | 152 | CG5864-PD | 1..145 | 1..151 | 267 | 34.4 | Plus |
AP-1sigma-PC | 157 | CG5864-PC | 1..146 | 1..152 | 266 | 34.2 | Plus |
AP-1sigma-PB | 157 | CG5864-PB | 1..146 | 1..152 | 266 | 34.2 | Plus |