Clone BS11436 Report

Search the DGRC for BS11436

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG34362-RA
Protein status:BS11436.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11436.3prime Sequence

845 bp (765 high quality bases) assembled on 2006-05-08

> BS11436.3prime
ATGGTCTAGAAAGCTTTTACTGTGCCTGCAAGAGTAGAGGATAAACCTGG
GGGCTCACTTGGAACTGCTGGATCGGATAGGCCACCACGCCGGCGGCCTG
CGGAATGGCGGTGCCGGCCACGCCCGTTGCCAGCTGCTGGGCAGGTGAGA
TCTGCGCCTGGGTGACGCCTTGCCAGGTGGCCGGAATCTGCACTCCCATG
CCCATGTATCCCTGCTGATATCCGCCGTACTGGCCGAAGTGATAGCCCTG
TATGCCCTGCAGGAACTGGTTCTGCACGGCGGCTGCACTGGCCGCCGCTG
GGGTCACCGCTGCGGCGGTGGCCGAGGAAGCCGGGTAGGTGGGCGTGGGC
GAGTACCAGCAGCCCGTGGCGGCCAGCTGCTGTCCGTAGGCGGCGGCGGC
AGCAGCCGCGCCCACTCCATACGGGAAACCGGCGGCAGCAGCGGCGGCAC
TGTTCAGGGCCTGGGTGGCGATGGTCTGCGCATTGTTGGGGTCACCACTC
TCCTTGCCCCACGAGCACTTCACCGGCTGGGCGTTGATCTCGGTGTTGTG
TACGCCCACGATGGCGTGAGTGGCCGCCTCCTTGGTGGAGAAGCGCACGA
AAGCGTATCCCTTGTCCTTGAAGACGCGAATCTCCTGTATCGCGCCGTAG
GGGGCGAAGGTCTTCTGGAGGACCTCCTCGCTGAGGGCGGTGAGGGCGCT
GTTGACGCCGCCCACGTAAACGGTGCAATTGGAGGGACTGCTCTGATTGT
AGACCTCGTCGAAGGTCAACGGCTTGATGTTCTCTTTACTCGCCGGCGGT
TTCCGTGTGGCCCAATTCGTGCGAATTGAGCGGGAGCCAAGCCAT

BS11436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12870-PA 1518 CG12870-RA 690..1518 845..17 4145 100 Minus
CG4787-PA 621 CG4787-RA 226..308 640..558 265 92.7 Minus
CG4787-PA 621 CG4787-RA 355..381 511..485 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-RI 2729 CG34362-RI 1573..2402 845..16 4150 100 Minus
CG34362-RA 2495 CG34362-RA 1339..2168 845..16 4150 100 Minus
CG34362-RJ 2530 CG34362-RJ 1339..2139 845..45 4005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28083229..28083622 594..201 1970 100 Minus
3R 32079331 3R 28082899..28083090 785..594 960 100 Minus
3R 32079331 3R 28084462..28084618 201..45 785 100 Minus
3R 32079331 3R 28235268..28235453 776..594 370 81.2 Minus
3R 32079331 3R 28237032..28237139 592..485 360 88.9 Minus
3R 32079331 3R 28078571..28078632 845..784 310 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:50:05 has no hits.

BS11436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:04 Download gff for BS11436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12870-PA 690..1518 17..845 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:36 Download gff for BS11436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12870-PA 690..1518 17..845 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:34:42 Download gff for BS11436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 1339..2171 13..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:42 Download gff for BS11436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 1339..2171 13..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:42 Download gff for BS11436.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28084463..28084616 47..200 100 -> Minus
3R 28085405..28085438 13..46 97   Minus
3R 28082901..28083090 594..783 100 -> Minus
3R 28083230..28083622 201..593 100 -> Minus
3R 28078571..28078632 784..845 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:34:42 Download gff for BS11436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23904293..23904354 784..845 100 -> Minus
arm_3R 23908623..23908812 594..783 100 -> Minus
arm_3R 23908952..23909344 201..593 100 -> Minus
arm_3R 23910185..23910338 47..200 100 -> Minus
arm_3R 23911127..23911160 13..46 97   Minus

BS11436.5prime Sequence

876 bp (866 high quality bases) assembled on 2006-05-08

> BS11436.5prime
GAAGTTATCAGTCGACATGTTGGCCATGCCCACGCTGATGATGCCAGCCA
CCGCCCAGATGACGCTCAGCGCCGCCCACGGAAAGCCCTACGAGACAAAG
CTGCTGGCCATCCACCAGACGCACCTCCAGCAGCAGCAGCAGCAACAGGC
ACCCGCTCCACCGCAGCAGCAGCAGCAGGTGCAGCAGTCGCAGCAGCAGG
CACCCAACGGCAAGCAGCAGTCGCAGCAGATGACCATTGTCACCACCCAG
CAGCAGCAGCAACAGCAGCATCCCCAGTCGCAGTCGCCGCACCAGCAGCA
GCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCGCCGCTGCAGCCGCAGCAG
CCCACCATCAGCAGCAGCAGGCGGTGGCCGCAGCAGTCTGTGCTGCCCAG
CAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCAGCAGCAGTACCAGATCCA
CTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCA
AGCAGGAACAATTCCACATCTTTGTCGGCGACTTGAGCTCAGAAATTGAA
ACTCAGCAATTGCGCGAAGCATTCACACCATTCGGCGAAATCTCCGACTG
TCGCGTGGTGCGCGATCCACAAACCTTGAAGTCGAAGGGCTATGGCTTTG
TGTCCTTCATCAAGAAATCGGAAGCCGAAAGCGCCATCACGGCCATGAAT
GGCCAATGGCTTGGCTCCCGCTCAATTCGCACGAATTGGGCCACACGGAA
ACCGCCGGCGAGTAAAGAGAACATCAAGCCGTTGACCTTCGACGAGGTCT
ACAATCAGAGCAGTCCCTCCAATTGCACCGTTTACGTGGGCGGCGTCAAC
AGCGCCCTCACCGCCCTCAGCGAGGA

BS11436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12870-PA 1518 CG12870-RA 1..860 17..876 4300 100 Plus
CG4787-PA 621 CG4787-RA 1..65 695..759 150 89.2 Plus
CG32970-PA 1377 CG32970-RA 828..854 244..270 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-RF 7452 CG34362-RF 650..1509 17..876 4300 100 Plus
CG34362-RE 5991 CG34362-RE 650..1509 17..876 4300 100 Plus
CG34362-RJ 2530 CG34362-RJ 650..1509 17..876 4300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28049817..28050306 17..506 2450 100 Plus
3R 32079331 3R 28082899..28083009 766..876 555 100 Plus
3R 32079331 3R 28078535..28078632 670..767 490 100 Plus
3R 32079331 3R 28075676..28075764 506..594 445 100 Plus
3R 32079331 3R 28078161..28078237 595..671 385 100 Plus
3R 32079331 3R 28235074..28235163 670..759 270 86.7 Plus
3R 32079331 3R 28235268..28235352 775..859 215 83.5 Plus
Blast to na_te.dros performed on 2015-02-12 19:32:13 has no hits.

BS11436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:05 Download gff for BS11436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12870-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:37 Download gff for BS11436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12870-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:35 Download gff for BS11436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 640..1508 9..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:49:05 Download gff for BS11436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RJ 640..1508 9..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:05 Download gff for BS11436.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28049807..28050306 9..506 99 -> Plus
3R 28075677..28075764 507..594 100 -> Plus
3R 28078161..28078236 595..670 100 -> Plus
3R 28078536..28078632 671..767 100 -> Plus
3R 28082901..28083008 768..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:35 Download gff for BS11436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23875529..23876028 9..506 99 -> Plus
arm_3R 23901399..23901486 507..594 100 -> Plus
arm_3R 23903883..23903958 595..670 100 -> Plus
arm_3R 23904258..23904354 671..767 100 -> Plus
arm_3R 23908623..23908730 768..875 100   Plus

BS11436.complete Sequence

1550 bp assembled on 2006-11-01

GenBank Submission: FJ636867

> BS11436.complete
GAAGTTATCAGTCGACATGTTGGCCATGCCCACGCTGATGATGCCAGCCA
CCGCCCAGATGACGCTCAGCGCCGCCCACGGAAAGCCCTACGAGACAAAG
CTGCTGGCCATCCACCAGACGCACCTCCAGCAGCAGCAGCAGCAACAGGC
ACCCGCTCCACCGCAGCAGCAGCAGCAGGTGCAGCAGTCGCAGCAGCAGG
CACCCAACGGCAAGCAGCAGTCGCAGCAGATGACCATTGTCACCACCCAG
CAGCAGCAGCAACAGCAGCATCCCCAGTCGCAGTCGCCGCACCAGCAGCA
GCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCGCCGCTGCAGCCGCAGCAG
CCCACCATCAGCAGCAGCAGGCGGTGGCCGCAGCAGTCTGTGCTGCCCAG
CAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCAGCAGCAGTACCAGATCCA
CTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCA
AGCAGGAACAATTCCACATCTTTGTCGGCGACTTGAGCTCAGAAATTGAA
ACTCAGCAATTGCGCGAAGCATTCACACCATTCGGCGAAATCTCCGACTG
TCGCGTGGTGCGCGATCCACAAACCTTGAAGTCGAAGGGCTATGGCTTTG
TGTCCTTCATCAAGAAATCGGAAGCCGAAAGCGCCATCACGGCCATGAAT
GGCCAATGGCTTGGCTCCCGCTCAATTCGCACGAATTGGGCCACACGGAA
ACCGCCGGCGAGTAAAGAGAACATCAAGCCGTTGACCTTCGACGAGGTCT
ACAATCAGAGCAGTCCCTCCAATTGCACCGTTTACGTGGGCGGCGTCAAC
AGCGCCCTCACCGCCCTCAGCGAGGAGGTCCTCCAGAAGACCTTCGCCCC
CTACGGCGCGATACAGGAGATTCGCGTCTTCAAGGACAAGGGATACGCTT
TCGTGCGCTTCTCCACCAAGGAGGCGGCCACTCACGCCATCGTGGGCGTA
CACAACACCGAGATCAACGCCCAGCCGGTGAAGTGCTCGTGGGGCAAGGA
GAGTGGTGACCCCAACAATGCGCAGACCATCGCCACCCAGGCCCTGAACA
GTGCCGCCGCTGCTGCCGCCGGTTTCCCGTATGGAGTGGGCGCGGCTGCT
GCCGCCGCCGCCTACGGACAGCAGCTGGCCGCCACGGGCTGCTGGTACTC
GCCCACGCCCACCTACCCGGCTTCCTCGGCCACCGCCGCAGCGGTGACCC
CAGCGGCGGCCAGTGCAGCCGCCGTGCAGAACCAGTTCCTGCAGGGCATA
CAGGGCTATCACTTCGGCCAGTACGGCGGATATCAGCAGGGATACATGGG
CATGGGAGTGCAGATTCCGGCCACCTGGCAAGGCGTCACCCAGGCGCAGA
TCTCACCTGCCCAGCAGCTGGCAACGGGCGTGGCCGGCACCGCCATTCCG
CAGGCCGCCGGCGTGGTGGCCTATCCGATCCAGCAGTTCCAAGTGAGCCC
CCAGGTTTATCCTCTACTCTTGCAGGCACAGTAAAAGCTTTCTAGACCAT

BS11436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-RA 1518 CG34362-PA 1..1518 17..1534 7590 100 Plus
CG34362-RJ 1527 CG34362-PJ 1..1490 17..1506 7450 100 Plus
CG34362-RF 1497 CG34362-PF 1..1489 17..1505 7445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-RA 2495 CG34362-RA 650..2168 17..1535 7595 100 Plus
CG34362-RJ 2530 CG34362-RJ 650..2139 17..1506 7450 100 Plus
CG34362-RF 7452 CG34362-RF 650..2138 17..1505 7445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28049817..28050306 17..506 2450 100 Plus
3R 32079331 3R 28083229..28083622 957..1350 1970 100 Plus
3R 32079331 3R 28082899..28083090 766..957 960 100 Plus
3R 32079331 3R 28084462..28084618 1350..1506 785 100 Plus
3R 32079331 3R 28078535..28078632 670..767 490 100 Plus
3R 32079331 3R 28075676..28075764 506..594 445 100 Plus
3R 32079331 3R 28078161..28078237 595..671 385 100 Plus
3R 32079331 3R 28235268..28235453 775..957 370 81.2 Plus
3R 32079331 3R 28237032..28237139 959..1066 360 88.9 Plus
3R 32079331 3R 28235074..28235163 670..759 270 86.7 Plus
Blast to na_te.dros performed on 2014-11-28 05:06:51 has no hits.

BS11436.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:04 Download gff for BS11436.complete
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 652..2162 22..1532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:17 Download gff for BS11436.complete
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 655..2165 22..1532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:57 Download gff for BS11436.complete
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 637..2168 9..1538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:28 Download gff for BS11436.complete
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 655..2165 22..1532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:28 Download gff for BS11436.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28049822..28050306 22..506 100 -> Plus
3R 28075677..28075764 507..594 100 -> Plus
3R 28078161..28078236 595..670 100 -> Plus
3R 28078536..28078632 671..767 100 -> Plus
3R 28082901..28083090 768..957 100 -> Plus
3R 28083230..28083622 958..1350 100 -> Plus
3R 28084463..28084616 1351..1504 100 -> Plus
3R 28085405..28085432 1505..1532 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:17 Download gff for BS11436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23875544..23876028 22..506 100 -> Plus
arm_3R 23901399..23901486 507..594 100 -> Plus
arm_3R 23903883..23903958 595..670 100 -> Plus
arm_3R 23904258..23904354 671..767 100 -> Plus
arm_3R 23908623..23908812 768..957 100 -> Plus
arm_3R 23908952..23909344 958..1350 100 -> Plus
arm_3R 23910185..23910338 1351..1504 100 -> Plus
arm_3R 23911127..23911154 1505..1532 100   Plus

BS11436.pep Sequence

Translation from 16 to 1533

> BS11436.pep
MLAMPTLMMPATAQMTLSAAHGKPYETKLLAIHQTHLQQQQQQQAPAPPQ
QQQQVQQSQQQAPNGKQQSQQMTIVTTQQQQQQQHPQSQSPHQQQQSQQQ
AAAAAAAAAAAAHHQQQQAVAAAVCAAQQQAVVVQQQQQQQYQIHSQQQS
PQQQQVLCISPKQEQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRD
PQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASK
ENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQ
EIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGDPN
NAQTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQLAATGCWYSPTPTY
PASSATAAAVTPAAASAAAVQNQFLQGIQGYHFGQYGGYQQGYMGMGVQI
PATWQGVTQAQISPAQQLATGVAGTAIPQAAGVVAYPIQQFQVSPQVYPL
LLQAQ*

BS11436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-PA 505 CG34362-PA 1..505 1..505 2586 100 Plus
CG34362-PJ 508 CG34362-PJ 1..497 1..497 2546 100 Plus
CG34362-PE 509 CG34362-PE 1..497 1..497 2543 99.8 Plus
CG34362-PF 498 CG34362-PF 1..496 1..496 2542 100 Plus
CG34362-PI 651 CG34362-PI 141..651 29..505 1780 72.4 Plus