Clone Sequence Records
BS11436.3prime Sequence
845 bp (765 high quality bases) assembled on 2006-05-08
> BS11436.3prime
ATGGTCTAGAAAGCTTTTACTGTGCCTGCAAGAGTAGAGGATAAACCTGG
GGGCTCACTTGGAACTGCTGGATCGGATAGGCCACCACGCCGGCGGCCTG
CGGAATGGCGGTGCCGGCCACGCCCGTTGCCAGCTGCTGGGCAGGTGAGA
TCTGCGCCTGGGTGACGCCTTGCCAGGTGGCCGGAATCTGCACTCCCATG
CCCATGTATCCCTGCTGATATCCGCCGTACTGGCCGAAGTGATAGCCCTG
TATGCCCTGCAGGAACTGGTTCTGCACGGCGGCTGCACTGGCCGCCGCTG
GGGTCACCGCTGCGGCGGTGGCCGAGGAAGCCGGGTAGGTGGGCGTGGGC
GAGTACCAGCAGCCCGTGGCGGCCAGCTGCTGTCCGTAGGCGGCGGCGGC
AGCAGCCGCGCCCACTCCATACGGGAAACCGGCGGCAGCAGCGGCGGCAC
TGTTCAGGGCCTGGGTGGCGATGGTCTGCGCATTGTTGGGGTCACCACTC
TCCTTGCCCCACGAGCACTTCACCGGCTGGGCGTTGATCTCGGTGTTGTG
TACGCCCACGATGGCGTGAGTGGCCGCCTCCTTGGTGGAGAAGCGCACGA
AAGCGTATCCCTTGTCCTTGAAGACGCGAATCTCCTGTATCGCGCCGTAG
GGGGCGAAGGTCTTCTGGAGGACCTCCTCGCTGAGGGCGGTGAGGGCGCT
GTTGACGCCGCCCACGTAAACGGTGCAATTGGAGGGACTGCTCTGATTGT
AGACCTCGTCGAAGGTCAACGGCTTGATGTTCTCTTTACTCGCCGGCGGT
TTCCGTGTGGCCCAATTCGTGCGAATTGAGCGGGAGCCAAGCCAT
BS11436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12870-PA | 1518 | CG12870-RA | 690..1518 | 845..17 | 4145 | 100 | Minus |
CG4787-PA | 621 | CG4787-RA | 226..308 | 640..558 | 265 | 92.7 | Minus |
CG4787-PA | 621 | CG4787-RA | 355..381 | 511..485 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-RI | 2729 | CG34362-RI | 1573..2402 | 845..16 | 4150 | 100 | Minus |
CG34362-RA | 2495 | CG34362-RA | 1339..2168 | 845..16 | 4150 | 100 | Minus |
CG34362-RJ | 2530 | CG34362-RJ | 1339..2139 | 845..45 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28083229..28083622 | 594..201 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 28082899..28083090 | 785..594 | 960 | 100 | Minus |
3R | 32079331 | 3R | 28084462..28084618 | 201..45 | 785 | 100 | Minus |
3R | 32079331 | 3R | 28235268..28235453 | 776..594 | 370 | 81.2 | Minus |
3R | 32079331 | 3R | 28237032..28237139 | 592..485 | 360 | 88.9 | Minus |
3R | 32079331 | 3R | 28078571..28078632 | 845..784 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:50:05 has no hits.
BS11436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:04 Download gff for
BS11436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12870-PA | 690..1518 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:36 Download gff for
BS11436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12870-PA | 690..1518 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:34:42 Download gff for
BS11436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 1339..2171 | 13..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:42 Download gff for
BS11436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 1339..2171 | 13..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:42 Download gff for
BS11436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28084463..28084616 | 47..200 | 100 | -> | Minus |
3R | 28085405..28085438 | 13..46 | 97 | | Minus |
3R | 28082901..28083090 | 594..783 | 100 | -> | Minus |
3R | 28083230..28083622 | 201..593 | 100 | -> | Minus |
3R | 28078571..28078632 | 784..845 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:34:42 Download gff for
BS11436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23904293..23904354 | 784..845 | 100 | -> | Minus |
arm_3R | 23908623..23908812 | 594..783 | 100 | -> | Minus |
arm_3R | 23908952..23909344 | 201..593 | 100 | -> | Minus |
arm_3R | 23910185..23910338 | 47..200 | 100 | -> | Minus |
arm_3R | 23911127..23911160 | 13..46 | 97 | | Minus |
BS11436.5prime Sequence
876 bp (866 high quality bases) assembled on 2006-05-08
> BS11436.5prime
GAAGTTATCAGTCGACATGTTGGCCATGCCCACGCTGATGATGCCAGCCA
CCGCCCAGATGACGCTCAGCGCCGCCCACGGAAAGCCCTACGAGACAAAG
CTGCTGGCCATCCACCAGACGCACCTCCAGCAGCAGCAGCAGCAACAGGC
ACCCGCTCCACCGCAGCAGCAGCAGCAGGTGCAGCAGTCGCAGCAGCAGG
CACCCAACGGCAAGCAGCAGTCGCAGCAGATGACCATTGTCACCACCCAG
CAGCAGCAGCAACAGCAGCATCCCCAGTCGCAGTCGCCGCACCAGCAGCA
GCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCGCCGCTGCAGCCGCAGCAG
CCCACCATCAGCAGCAGCAGGCGGTGGCCGCAGCAGTCTGTGCTGCCCAG
CAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCAGCAGCAGTACCAGATCCA
CTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCA
AGCAGGAACAATTCCACATCTTTGTCGGCGACTTGAGCTCAGAAATTGAA
ACTCAGCAATTGCGCGAAGCATTCACACCATTCGGCGAAATCTCCGACTG
TCGCGTGGTGCGCGATCCACAAACCTTGAAGTCGAAGGGCTATGGCTTTG
TGTCCTTCATCAAGAAATCGGAAGCCGAAAGCGCCATCACGGCCATGAAT
GGCCAATGGCTTGGCTCCCGCTCAATTCGCACGAATTGGGCCACACGGAA
ACCGCCGGCGAGTAAAGAGAACATCAAGCCGTTGACCTTCGACGAGGTCT
ACAATCAGAGCAGTCCCTCCAATTGCACCGTTTACGTGGGCGGCGTCAAC
AGCGCCCTCACCGCCCTCAGCGAGGA
BS11436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12870-PA | 1518 | CG12870-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
CG4787-PA | 621 | CG4787-RA | 1..65 | 695..759 | 150 | 89.2 | Plus |
CG32970-PA | 1377 | CG32970-RA | 828..854 | 244..270 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-RF | 7452 | CG34362-RF | 650..1509 | 17..876 | 4300 | 100 | Plus |
CG34362-RE | 5991 | CG34362-RE | 650..1509 | 17..876 | 4300 | 100 | Plus |
CG34362-RJ | 2530 | CG34362-RJ | 650..1509 | 17..876 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28049817..28050306 | 17..506 | 2450 | 100 | Plus |
3R | 32079331 | 3R | 28082899..28083009 | 766..876 | 555 | 100 | Plus |
3R | 32079331 | 3R | 28078535..28078632 | 670..767 | 490 | 100 | Plus |
3R | 32079331 | 3R | 28075676..28075764 | 506..594 | 445 | 100 | Plus |
3R | 32079331 | 3R | 28078161..28078237 | 595..671 | 385 | 100 | Plus |
3R | 32079331 | 3R | 28235074..28235163 | 670..759 | 270 | 86.7 | Plus |
3R | 32079331 | 3R | 28235268..28235352 | 775..859 | 215 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:32:13 has no hits.
BS11436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:05 Download gff for
BS11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12870-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:37 Download gff for
BS11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12870-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:35 Download gff for
BS11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 640..1508 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:49:05 Download gff for
BS11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RJ | 640..1508 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:05 Download gff for
BS11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28049807..28050306 | 9..506 | 99 | -> | Plus |
3R | 28075677..28075764 | 507..594 | 100 | -> | Plus |
3R | 28078161..28078236 | 595..670 | 100 | -> | Plus |
3R | 28078536..28078632 | 671..767 | 100 | -> | Plus |
3R | 28082901..28083008 | 768..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:35 Download gff for
BS11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23875529..23876028 | 9..506 | 99 | -> | Plus |
arm_3R | 23901399..23901486 | 507..594 | 100 | -> | Plus |
arm_3R | 23903883..23903958 | 595..670 | 100 | -> | Plus |
arm_3R | 23904258..23904354 | 671..767 | 100 | -> | Plus |
arm_3R | 23908623..23908730 | 768..875 | 100 | | Plus |
BS11436.complete Sequence
1550 bp assembled on 2006-11-01
GenBank Submission: FJ636867
> BS11436.complete
GAAGTTATCAGTCGACATGTTGGCCATGCCCACGCTGATGATGCCAGCCA
CCGCCCAGATGACGCTCAGCGCCGCCCACGGAAAGCCCTACGAGACAAAG
CTGCTGGCCATCCACCAGACGCACCTCCAGCAGCAGCAGCAGCAACAGGC
ACCCGCTCCACCGCAGCAGCAGCAGCAGGTGCAGCAGTCGCAGCAGCAGG
CACCCAACGGCAAGCAGCAGTCGCAGCAGATGACCATTGTCACCACCCAG
CAGCAGCAGCAACAGCAGCATCCCCAGTCGCAGTCGCCGCACCAGCAGCA
GCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCGCCGCTGCAGCCGCAGCAG
CCCACCATCAGCAGCAGCAGGCGGTGGCCGCAGCAGTCTGTGCTGCCCAG
CAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCAGCAGCAGTACCAGATCCA
CTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCA
AGCAGGAACAATTCCACATCTTTGTCGGCGACTTGAGCTCAGAAATTGAA
ACTCAGCAATTGCGCGAAGCATTCACACCATTCGGCGAAATCTCCGACTG
TCGCGTGGTGCGCGATCCACAAACCTTGAAGTCGAAGGGCTATGGCTTTG
TGTCCTTCATCAAGAAATCGGAAGCCGAAAGCGCCATCACGGCCATGAAT
GGCCAATGGCTTGGCTCCCGCTCAATTCGCACGAATTGGGCCACACGGAA
ACCGCCGGCGAGTAAAGAGAACATCAAGCCGTTGACCTTCGACGAGGTCT
ACAATCAGAGCAGTCCCTCCAATTGCACCGTTTACGTGGGCGGCGTCAAC
AGCGCCCTCACCGCCCTCAGCGAGGAGGTCCTCCAGAAGACCTTCGCCCC
CTACGGCGCGATACAGGAGATTCGCGTCTTCAAGGACAAGGGATACGCTT
TCGTGCGCTTCTCCACCAAGGAGGCGGCCACTCACGCCATCGTGGGCGTA
CACAACACCGAGATCAACGCCCAGCCGGTGAAGTGCTCGTGGGGCAAGGA
GAGTGGTGACCCCAACAATGCGCAGACCATCGCCACCCAGGCCCTGAACA
GTGCCGCCGCTGCTGCCGCCGGTTTCCCGTATGGAGTGGGCGCGGCTGCT
GCCGCCGCCGCCTACGGACAGCAGCTGGCCGCCACGGGCTGCTGGTACTC
GCCCACGCCCACCTACCCGGCTTCCTCGGCCACCGCCGCAGCGGTGACCC
CAGCGGCGGCCAGTGCAGCCGCCGTGCAGAACCAGTTCCTGCAGGGCATA
CAGGGCTATCACTTCGGCCAGTACGGCGGATATCAGCAGGGATACATGGG
CATGGGAGTGCAGATTCCGGCCACCTGGCAAGGCGTCACCCAGGCGCAGA
TCTCACCTGCCCAGCAGCTGGCAACGGGCGTGGCCGGCACCGCCATTCCG
CAGGCCGCCGGCGTGGTGGCCTATCCGATCCAGCAGTTCCAAGTGAGCCC
CCAGGTTTATCCTCTACTCTTGCAGGCACAGTAAAAGCTTTCTAGACCAT
BS11436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-RA | 1518 | CG34362-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
CG34362-RJ | 1527 | CG34362-PJ | 1..1490 | 17..1506 | 7450 | 100 | Plus |
CG34362-RF | 1497 | CG34362-PF | 1..1489 | 17..1505 | 7445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-RA | 2495 | CG34362-RA | 650..2168 | 17..1535 | 7595 | 100 | Plus |
CG34362-RJ | 2530 | CG34362-RJ | 650..2139 | 17..1506 | 7450 | 100 | Plus |
CG34362-RF | 7452 | CG34362-RF | 650..2138 | 17..1505 | 7445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28049817..28050306 | 17..506 | 2450 | 100 | Plus |
3R | 32079331 | 3R | 28083229..28083622 | 957..1350 | 1970 | 100 | Plus |
3R | 32079331 | 3R | 28082899..28083090 | 766..957 | 960 | 100 | Plus |
3R | 32079331 | 3R | 28084462..28084618 | 1350..1506 | 785 | 100 | Plus |
3R | 32079331 | 3R | 28078535..28078632 | 670..767 | 490 | 100 | Plus |
3R | 32079331 | 3R | 28075676..28075764 | 506..594 | 445 | 100 | Plus |
3R | 32079331 | 3R | 28078161..28078237 | 595..671 | 385 | 100 | Plus |
3R | 32079331 | 3R | 28235268..28235453 | 775..957 | 370 | 81.2 | Plus |
3R | 32079331 | 3R | 28237032..28237139 | 959..1066 | 360 | 88.9 | Plus |
3R | 32079331 | 3R | 28235074..28235163 | 670..759 | 270 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:06:51 has no hits.
BS11436.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:04 Download gff for
BS11436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 652..2162 | 22..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:17 Download gff for
BS11436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 655..2165 | 22..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:57 Download gff for
BS11436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 637..2168 | 9..1538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:28 Download gff for
BS11436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 655..2165 | 22..1532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:28 Download gff for
BS11436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28049822..28050306 | 22..506 | 100 | -> | Plus |
3R | 28075677..28075764 | 507..594 | 100 | -> | Plus |
3R | 28078161..28078236 | 595..670 | 100 | -> | Plus |
3R | 28078536..28078632 | 671..767 | 100 | -> | Plus |
3R | 28082901..28083090 | 768..957 | 100 | -> | Plus |
3R | 28083230..28083622 | 958..1350 | 100 | -> | Plus |
3R | 28084463..28084616 | 1351..1504 | 100 | -> | Plus |
3R | 28085405..28085432 | 1505..1532 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:17 Download gff for
BS11436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23875544..23876028 | 22..506 | 100 | -> | Plus |
arm_3R | 23901399..23901486 | 507..594 | 100 | -> | Plus |
arm_3R | 23903883..23903958 | 595..670 | 100 | -> | Plus |
arm_3R | 23904258..23904354 | 671..767 | 100 | -> | Plus |
arm_3R | 23908623..23908812 | 768..957 | 100 | -> | Plus |
arm_3R | 23908952..23909344 | 958..1350 | 100 | -> | Plus |
arm_3R | 23910185..23910338 | 1351..1504 | 100 | -> | Plus |
arm_3R | 23911127..23911154 | 1505..1532 | 100 | | Plus |
BS11436.pep Sequence
Translation from 16 to 1533
> BS11436.pep
MLAMPTLMMPATAQMTLSAAHGKPYETKLLAIHQTHLQQQQQQQAPAPPQ
QQQQVQQSQQQAPNGKQQSQQMTIVTTQQQQQQQHPQSQSPHQQQQSQQQ
AAAAAAAAAAAAHHQQQQAVAAAVCAAQQQAVVVQQQQQQQYQIHSQQQS
PQQQQVLCISPKQEQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRD
PQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASK
ENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQ
EIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGDPN
NAQTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQLAATGCWYSPTPTY
PASSATAAAVTPAAASAAAVQNQFLQGIQGYHFGQYGGYQQGYMGMGVQI
PATWQGVTQAQISPAQQLATGVAGTAIPQAAGVVAYPIQQFQVSPQVYPL
LLQAQ*
BS11436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-PA | 505 | CG34362-PA | 1..505 | 1..505 | 2586 | 100 | Plus |
CG34362-PJ | 508 | CG34362-PJ | 1..497 | 1..497 | 2546 | 100 | Plus |
CG34362-PE | 509 | CG34362-PE | 1..497 | 1..497 | 2543 | 99.8 | Plus |
CG34362-PF | 498 | CG34362-PF | 1..496 | 1..496 | 2542 | 100 | Plus |
CG34362-PI | 651 | CG34362-PI | 141..651 | 29..505 | 1780 | 72.4 | Plus |