Clone Sequence Records
BS11442.complete Sequence
1742 bp assembled on 2009-12-07
GenBank Submission: KX806354
> BS11442.complete
GAAGTTATCAGTCGACATGAGATTAGCGTTAATATTGGGCACTCTTAGTG
CTATAGTGTGCTTGGCCAGCAGCTTGAGCCAGTCAGAGGCGAGTGGCTCA
AAGGGCAATGGATTTCCCAAAAAGGTTACCACCCTGAAGAAGCGACCAAC
AAAAACGCCGACCACAGTTCCGATTTCCATCAGCAGAGCAACCACTTTGA
AGCCCAGTAAGCCACGCGTGAAGATCGGCACATCGGCAACCACCAAGAGC
CCCACGAAAGCACCGGCCTTAACCGAGACATTTGGCAATCTGCCGGCGGA
TGACCTGGAATTCATTAAGGAGCTGGACAAGCAGTTCAAACTGCACGGAA
ACAAGATCAAGATCAAGGTGGAGAGGGATAATTCCACGAGTAGCGGCGGC
AAGAACAGCAAGAGGACCATCGAGGGGGATTTGGGATACGGCTACTCGCA
TCCTGGCTATGATTACACGCCGCCCAAGTTCATGTTCTATCCATACTCAC
AGCATGATATTCCCTCGGGCTTTGCCCTTCCACAGCCACATCCGGAGGAG
CAGGAGGAGGAGGCACACCAGCCGGCAATGCAACATCATCACAATCACGA
GCAAGTGACCAGCGTGACCATTGAGCCCTCGTACTCCTACGAGCTTAAGC
CCCAGACCAGCTATGAAACCCAACCGCAGCACACAGCTCCCGAGCAGCCG
CAGATTGATCTGCCCCAGGATGAAGCGGAAAGTCCCAGTGGTGCAGGTGG
TTCCAGTGGCCACGGGGGATATCAGGAGCCCGTCATTGTCTTGCGTATTC
CAGGACCCGCCAAGTACGCCGCCCATTTGCAGACCCTTCTCCAGCAATAT
CTGGAGATCAGAGCGGCCCAGTACCTCAGCTTGCTCCAGGAGGCCGATCA
GCAGCAACAACAACAGCAGCATCAGCATGTGGATCCTTCGCAGCAATATG
GACCACCAGAACCGGCCACCTACCATCAGGAAGTCAGCTACGCCCACCAA
CTGGCACCCACGCCGGCACCCGTCCAGTACGCACCCATCGATGATGTCTA
CCAGAGCTACAAGGGTCGCCACCAGCAACAGCTGCAGCTGCAGCAGCAAC
AATATGAGCCGCAACAATACTACGCGCCCATGGACTACCAGCAGCCCACA
CAGTTCTACTACGCTCAGCCCCAATCCCATTTGCAGCAGCAGCCTCAGCT
CTATCTGATAGCAATGGCCCAGCCGGAAACGGAACCGGAGCCGCAACCAC
AGCAGCACCATCATCAGCAGCACCATCATCATCTTCAGCAGCAGCAGCAG
CAGCAGCAACCAATATACGTTCCAGAATCTGATCCACCGACGGGTCCTTC
AGGTGGTCCTGAACAGGAACCGGAGGCGGACCACAGCCTTCCCATAACGG
AAAACAACCCACGACCCACCCACACCAAGGTCATTTTTAATCCGTACCCC
TACCAGCAGCAGCAGCATCAACCGCAACAGCAGACCACCAACATCGAGGA
GCACCAGCACCAGCCTGAGGGCGAACGCCCCTTCAACTACCACGCCCATG
CGATCAAGATGCGCCAGGGCAAAAGGGCGGCCAAGCCGGAACCCGCGGAT
GGGGACGTGGGTCCCAGTTCGGGCGACAAGGGACTCCAACAGATCAGGGA
GTATGTGAGGGAGAAACTGGGCGCTGAAATGGGTTCGGCTGTCGAATACA
AGACGACACAGCTGCTCGAGGGCTGAAAGCTTTCTAGACCAT
BS11442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11380-RB | 1710 | CG11380-PB | 1..1710 | 17..1726 | 8550 | 100 | Plus |
| CG11380-RA | 1710 | CG11380-PA | 1..1710 | 17..1726 | 8550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11380-RB | 2801 | CG11380-RB | 381..2095 | 12..1726 | 8560 | 99.9 | Plus |
| CG11380-RA | 2704 | CG11380-RA | 284..1998 | 12..1726 | 8560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1194663..1195954 | 435..1726 | 6460 | 100 | Plus |
| X | 23542271 | X | 1194197..1194595 | 37..435 | 1995 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2458..2868 | 897..1310 | 307 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2868 | 1048..1526 | 294 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2410..2838 | 897..1307 | 282 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2678 | 1184..1526 | 265 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2527 | 1087..1315 | 245 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..3012 | 842..1510 | 243 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2999 | 897..1291 | 236 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2542 | 897..1116 | 218 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2589..2994 | 896..1318 | 218 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2563 | 1070..1289 | 208 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2910 | 897..1514 | 203 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 1074..1304 | 196 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..7219 | 897..1327 | 191 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6956 | 897..1112 | 187 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6923 | 897..1109 | 186 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7011 | 1070..1317 | 185 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..7055 | 897..1193 | 167 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..3004 | 877..1113 | 165 | 56.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3226..3375 | 1164..1317 | 159 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..7076 | 873..1145 | 156 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..7058 | 1051..1298 | 154 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1585 | 1062..1116 | 140 | 72.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1164 | 897..1002 | 136 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2855 | 897..946 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1564 | 1069..1116 | 132 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1153 | 1070..1117 | 132 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1140 | 1071..1116 | 131 | 76.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1046 | 906..982 | 124 | 62.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1011 | 1069..1109 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 902..982 | 121 | 64 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3217..3307 | 837..927 | 121 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1118..1152 | 1070..1104 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1585 | 897..927 | 119 | 87.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1567 | 899..927 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2515 | 530..606 | 117 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 895..926 | 115 | 84.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7962..8017 | 897..946 | 113 | 73.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9406..9461 | 897..946 | 113 | 73.2 | Plus |
BS11442.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:15 Download gff for
BS11442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 283..1991 | 17..1725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:19 Download gff for
BS11442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 289..1997 | 17..1725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:29 Download gff for
BS11442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 283..1991 | 17..1725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:08 Download gff for
BS11442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 289..1997 | 17..1725 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:08 Download gff for
BS11442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1191693..1191713 | 17..37 | 100 | -> | Plus |
| X | 1194198..1194595 | 38..435 | 100 | -> | Plus |
| X | 1194664..1195953 | 436..1725 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:19 Download gff for
BS11442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1085726..1085746 | 17..37 | 100 | -> | Plus |
| arm_X | 1088231..1088628 | 38..435 | 100 | -> | Plus |
| arm_X | 1088697..1089986 | 436..1725 | 100 | | Plus |
BS11442.3prime Sequence
885 bp (803 high quality bases) assembled on 2006-05-08
> BS11442.3prime
ATGGTCTAGAAAGCTTTCAGCCCTCGAGCAGCTGTGTCGTCTTGTATTCG
ACAGCCGAACCCATTTCAGCGCCCAGTTTCTCCCTCACATACTCCCTGAT
CTGTTGGAGTCCCTTGTCGCCCGAACTGGGACCCACGTCCCCATCCGCGG
GTTCCGGCTTGGCCGCCCTTTTGCCCTGGCGCATCTTGATCGCATGGGCG
TGGTAGTTGAAGGGGCGTTCGCCCTCAGGCTGGTGCTGGTGCTCCTCGAT
GTTGGTGGTCTGCTGTTGCGGTTGATGCTGCTGCTGCTGGTAGGGGTACG
GATTAAAAATGACCTTGGTGTGGGTGGGTCGTGGGTTGTTTTCCGTTATG
GGAAGGCTGTGGTCCGCCTCCGGTTCCTGTTCAGGACCACCTGAAGGACC
CGTCGGTGGATCAGATTCTGGAACGTATATTGGTTGCTGCTGCTGCTGCT
GCTGCTGAAGATGATGATGGTGCTGCTGATGATGGTGCTGCTGTGGTTGC
GGCTCCGGTTCCGTTTCCGGCTGGGCCATTGCTATCAGATAGAGCTGAGG
CTGCTGCTGCAAATGGGATTGGGGCTGAGCGTAGTAGAACTGTGTGGGCT
GCTGGTAGTCCATGGGCGCGTAGTATTGTTGCGGCTCATATTGTTGCTGC
TGCAGCTGCAGCTGTTGCTGGTGGCGACCCTTGTAGCTCTGGTAGACATC
ATCGATGGGTGCGTACTGGACGGGTGCCGGCGTGGGTGCCAGTTGGTGGG
CGTAGCTGACTTCCTGATGGTAGGTGGCCGGTTCTGGTGGTCCATATTGC
TGCGAAGGATCCACATGCTGATGCTGCTGTTGTTGTTGCTGCTGATCGGG
CTCCTGGAGCAAGCTGAGGTACTGGGCCGCTCTGA
BS11442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11380-PA | 1710 | CG11380-RA | 842..1710 | 885..17 | 4320 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11380-RB | 2801 | CG11380-RB | 1227..2095 | 885..17 | 4330 | 99.9 | Minus |
| CG11380-RA | 2704 | CG11380-RA | 1130..1998 | 885..17 | 4330 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1195086..1195954 | 885..17 | 4330 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-10 18:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2458..2868 | 846..433 | 307 | 58.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2868 | 695..217 | 294 | 57.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2838 | 856..436 | 287 | 58.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2678 | 559..217 | 265 | 58.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2527 | 656..428 | 245 | 59.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2606..2999 | 870..452 | 244 | 56.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2542 | 860..627 | 225 | 60.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2589..2994 | 847..425 | 218 | 55.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..3012 | 860..233 | 216 | 54.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2563 | 673..454 | 208 | 59.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2910 | 860..229 | 205 | 55.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..7219 | 870..416 | 198 | 55.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 669..439 | 196 | 57.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6956 | 856..631 | 192 | 59.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6923 | 846..634 | 186 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7011 | 673..426 | 185 | 55.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..7055 | 870..550 | 176 | 55.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..3004 | 866..630 | 174 | 56.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..7076 | 870..598 | 165 | 54.7 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3226..3375 | 579..426 | 159 | 60.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..7058 | 692..445 | 154 | 55.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1171 | 859..747 | 152 | 61.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1585 | 681..627 | 140 | 72.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2964 | 860..544 | 138 | 55.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2855 | 856..797 | 138 | 70 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1564 | 674..627 | 132 | 75 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1153 | 673..626 | 132 | 75 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1140 | 672..627 | 131 | 76.1 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1140 | 860..816 | 126 | 75.6 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1046 | 837..761 | 124 | 62.3 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1011 | 674..634 | 124 | 78 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 841..761 | 121 | 64 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1118..1152 | 673..639 | 121 | 82.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1585 | 846..816 | 119 | 87.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1567 | 844..816 | 118 | 89.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6946 | 857..775 | 117 | 63.9 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3263..3307 | 860..816 | 117 | 73.3 | Minus |
| TART-A | 13424 | TART-A 13424bp | 907..966 | 850..792 | 117 | 68.3 | Minus |
| TART-A | 13424 | TART-A 13424bp | 12085..12144 | 850..792 | 117 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6885 | 856..816 | 115 | 75.6 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1102..1154 | 870..817 | 114 | 70.4 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7962..8017 | 846..797 | 113 | 73.2 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9406..9461 | 846..797 | 113 | 73.2 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1011 | 856..826 | 110 | 83.9 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3323 | 670..626 | 108 | 71.1 | Minus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 238..273 | 37..2 | 108 | 77.8 | Minus |
BS11442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:15 Download gff for
BS11442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-PA | 843..1710 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:51 Download gff for
BS11442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-PA | 843..1710 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:49 Download gff for
BS11442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 1131..1998 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:36 Download gff for
BS11442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 1131..1998 | 17..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:36 Download gff for
BS11442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1195087..1195954 | 17..884 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:49 Download gff for
BS11442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1089120..1089987 | 17..884 | 99 | | Minus |
BS11442.5prime Sequence
923 bp (726 high quality bases) assembled on 2006-05-08
> BS11442.5prime
GAAGTTATCAGTCGACATGAGATTAGCGTTAATATTGGGCACTCTTAGTG
CTATAGTGTGCTTGGCCAGCAGCTTGAGCCAGTCAGAGGCGAGTGGCTCA
AAGGGCAATGGATTTCCCAAAAAGGTTACCACCCTGAAGAAGCGACCAAC
AAAAACGCCGACCACAGTTCCGATTTCCATCAGCAGAGCAACCACTTTGA
AGCCCAGTAAGCCACGCGTGAAGATCGGCACATCGGCAACCACCAAGAGC
CCCACGAAAGCACCGGCCTTAACCGAGACATTTGGCAATCTGCCGGCGGA
TGACCTGGAATTCATTAAGGAGCTGGACAAGCAGTTCAAACTGCACGGAA
ACAAGATCAAGATCAAGGTGGAGAGGGATAATTCCACGAGTAGCGGCGGC
AAGAACAGCAAGAGGACCATCGAGGGGGATTTGGGATACGGCTACTCGCA
TCCTGGCTATGATTACACGCCGCCCAAGTTCATGTTCTATCCATACTCAC
AGCATGATATTCCCTCGGGCTTTGCCCTTCCACAGCCACATCCGGAGGAG
CAGGAGGAGGAGGCACACCAGCCGGCAATGCAACATCATCACAATCACGA
GCAAGTGACCAGCGTGACCATTGAGCCCTCGTACTCCTACGAGCTTAAGC
CCCAGACCAGCTATGAAACCCAACCGCAGCACACAGCTCCCGAGCAGCCG
CAGATTGATCTGCCCCAGGATGAAGCGGAAAGTCCCAGTGGTGCAGGTGG
TTCCAGTGGCCACGGGGGATATCAGGAGCCCGTCATTGTCTTGCGTATTC
CAGGACCCGCCAAGTACGCCGCCCCATTGCAGACCCTTCTCCAGCAATAT
CTGGAGATCAGAGCGGCCCAGTACCTCAGCTTGCTCCAGGAGGCCGATCA
GCAGCAACAACAACAGCAGCATC
BS11442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11380-PA | 1710 | CG11380-RA | 1..907 | 17..923 | 4485 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11380-RB | 2801 | CG11380-RB | 381..1292 | 12..923 | 4515 | 99.7 | Plus |
| CG11380-RA | 2704 | CG11380-RA | 284..1195 | 12..923 | 4515 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1194663..1195151 | 435..923 | 2415 | 99.6 | Plus |
| X | 23542271 | X | 1194197..1194595 | 37..435 | 1995 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 10:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2515 | 530..606 | 117 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2832 | 897..923 | 117 | 92.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6857 | 873..923 | 117 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2817 | 877..923 | 115 | 74.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3217..3303 | 837..923 | 110 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2334 | 897..923 | 108 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2355 | 897..923 | 108 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2376 | 897..923 | 108 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2658 | 897..923 | 108 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..2661 | 897..923 | 108 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6746 | 897..923 | 108 | 88.9 | Plus |
BS11442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:16 Download gff for
BS11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:53 Download gff for
BS11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:56:52 Download gff for
BS11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 284..1195 | 12..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:23:46 Download gff for
BS11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 284..1195 | 12..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:23:46 Download gff for
BS11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1191688..1191713 | 12..37 | 96 | -> | Plus |
| X | 1194198..1194595 | 38..435 | 100 | -> | Plus |
| X | 1194664..1195151 | 436..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:56:52 Download gff for
BS11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1085721..1085746 | 12..37 | 96 | -> | Plus |
| arm_X | 1088231..1088628 | 38..435 | 100 | -> | Plus |
| arm_X | 1088697..1089184 | 436..923 | 99 | | Plus |
BS11442.pep Sequence
Translation from 16 to 1725
> BS11442.pep
MRLALILGTLSAIVCLASSLSQSEASGSKGNGFPKKVTTLKKRPTKTPTT
VPISISRATTLKPSKPRVKIGTSATTKSPTKAPALTETFGNLPADDLEFI
KELDKQFKLHGNKIKIKVERDNSTSSGGKNSKRTIEGDLGYGYSHPGYDY
TPPKFMFYPYSQHDIPSGFALPQPHPEEQEEEAHQPAMQHHHNHEQVTSV
TIEPSYSYELKPQTSYETQPQHTAPEQPQIDLPQDEAESPSGAGGSSGHG
GYQEPVIVLRIPGPAKYAAHLQTLLQQYLEIRAAQYLSLLQEADQQQQQQ
QHQHVDPSQQYGPPEPATYHQEVSYAHQLAPTPAPVQYAPIDDVYQSYKG
RHQQQLQLQQQQYEPQQYYAPMDYQQPTQFYYAQPQSHLQQQPQLYLIAM
AQPETEPEPQPQQHHHQQHHHHLQQQQQQQQPIYVPESDPPTGPSGGPEQ
EPEADHSLPITENNPRPTHTKVIFNPYPYQQQQHQPQQQTTNIEEHQHQP
EGERPFNYHAHAIKMRQGKRAAKPEPADGDVGPSSGDKGLQQIREYVREK
LGAEMGSAVEYKTTQLLEG*
BS11442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11380-PB | 569 | CG11380-PB | 1..569 | 1..569 | 3056 | 100 | Plus |
| CG11380-PA | 569 | CG11380-PA | 1..569 | 1..569 | 3056 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 364..734 | 152..505 | 210 | 23.9 | Plus |
| ptip-PA | 2294 | CG32133-PA | 203..541 | 170..517 | 209 | 26.5 | Plus |
| Lasp-PC | 636 | CG3849-PC | 154..339 | 273..492 | 208 | 33.2 | Plus |
| Lasp-PB | 657 | CG3849-PB | 175..360 | 273..492 | 208 | 33.2 | Plus |
| ptip-PA | 2294 | CG32133-PA | 621..999 | 186..522 | 200 | 25.5 | Plus |
| ptip-PA | 2294 | CG32133-PA | 833..1135 | 172..501 | 200 | 25.6 | Plus |
| ptip-PA | 2294 | CG32133-PA | 973..1386 | 162..521 | 193 | 24.2 | Plus |
