Clone Sequence Records
BS11443.3prime Sequence
864 bp (763 high quality bases) assembled on 2006-05-08
> BS11443.3prime
ATGGTCTAGAAAGCTTTTACCACATATTTTCTGATTCTTCTCGAAACTTA
AGGCCCTGGGCTTCGTTGATGATGGCGGCCAGGGCGGGATGTTGGTAGCG
CTCCCGGAAAATGGCCGATCCGTTTATGCGATCCGATCCGTTGGTGTTGC
CATTCAGGGTGCCCATGTTCCCATTCCCATTGCCATAGTGCATCATCGTC
AGTTTGTGCTGCGGCGTATGCTGTGGCGTCAGTGATGTGGGGGGCGTGGC
ATTACCGTTCTTATAGTAGCGATTCTGGTTGGGATCGTAAGTGGCCTGCT
CCTGATTCTGATTGAGACGATTGGCCATCTTGATGGAGGCACAGCGATCC
TCCTCGTTGTTGCGCATCTTCAAGATGCGTTGATCCTGCACCGAGTATCT
CGATCCGTTCAGGGAATTCAACTGATTGAGATTGCTTACTTGGGTGCTCA
GCTTTTTGGCTCGAAAACTGCCGCCTGGCGATGAGTTATTCAGCAGTGTT
CCCCTCGACGAACTGCCATTGGTCTCTGTGCTGTCCCTGCTCGCCTCCCG
GTAGCTCGAGGGGCGGTGCGTCGATGGGGGCGTGTCCAGGCCACTATCAT
GGGCCGAACAGTCCAGTTCGGTTTTGGCCAGCCCGATGTTGCTGCCGCCG
CCAGTGGGTAACATTGGTTGAACTGAGTGCCTCATATCAGTGGGCGCCCT
TGGCTTCCGGTACAGCCAATCGCGGTCCAGTTCGTTGCCATTATCCGGAG
TAGCGCTAACTCCCCGGAACAGTCTGGGTCTCCTCAGCTGAACCTCCGTC
TCCTCGGTCTCCTCATCCACCACCTGATTGGAACCGAAGCTGCTGGTGAT
AAAGATCCGCCTAG
BS11443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32982-PB | 1653 | CG32982-RB | 806..1653 | 864..17 | 4215 | 99.8 | Minus |
CG32982-PC | 1716 | CG32982-RC | 869..1716 | 864..17 | 4215 | 99.8 | Minus |
CG32982-PA | 2148 | CG32982-RA | 1223..1648 | 864..439 | 2105 | 99.7 | Minus |
CG32982-PA | 2148 | CG32982-RA | 1648..1994 | 385..39 | 1735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32982-RE | 3397 | CG32982-RE | 1992..2840 | 864..16 | 4230 | 99.9 | Minus |
CG32982-RD | 3241 | CG32982-RD | 1836..2684 | 864..16 | 4230 | 99.9 | Minus |
CG32982-RB | 2426 | CG32982-RB | 1021..1869 | 864..16 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9162074..9162708 | 674..40 | 3175 | 100 | Minus |
2L | 23513712 | 2L | 9161821..9162012 | 864..673 | 945 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:40:43 has no hits.
BS11443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:17 Download gff for
BS11443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-PB | 806..1653 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:54 Download gff for
BS11443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-PC | 869..1716 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:02:27 Download gff for
BS11443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RB | 1021..1869 | 16..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:39 Download gff for
BS11443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RB | 1021..1869 | 16..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:39 Download gff for
BS11443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9161821..9162012 | 673..864 | 99 | -> | Minus |
2L | 9162076..9162708 | 40..672 | 100 | -> | Minus |
2L | 9163141..9163164 | 16..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:02:27 Download gff for
BS11443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9161821..9162012 | 673..864 | 99 | -> | Minus |
arm_2L | 9162076..9162708 | 40..672 | 100 | -> | Minus |
arm_2L | 9163141..9163164 | 16..39 | 100 | | Minus |
BS11443.5prime Sequence
860 bp (801 high quality bases) assembled on 2006-05-08
> BS11443.5prime
GAAGTTATCAGTCGACATGATTTTTTCCACGGATTTGCATTGGCAATCCT
TGCTGGCAGGACGCATTCCGGTGGCCTCCATGACAGGACCCATTAAACGC
GGACTGCTCTGGCAGCAAAGGGATCGGCTCTTCTCTCGCTGGAAGGAGCG
ATACTTTGTGCTCACTCGTGACTACTTGCACTGCTTCAAAAGAGCCTCGG
GATCGGCCAATGAACGTGCCTCGGATATGGGACAGTTTATCTTCAAGGTC
AAGCTGGTGGACGTGGAGAAGGTGGAGTGGGTGAATCGGCGCTCCTACAG
CGCCATTGGTCTGCTACTGGGTCGCGAGGGTCGTGTTCTACTCCGCTGCG
ATGATGGCCTCGAGGATTGGTTCGAGCTGCTGGAGGAATGCACAATGACC
TCCAAGGAGCGCAGACGAGCCCTGAAGATTGCCCAAGGACCCAGATCCCG
AGCCTCATTGGCTGCTCCCGTTTCGCATGCTTCGCTGCAGTTCCAGCATT
TTGGACTCGGAGGCACTTACTCGAGTGCCCTGGACGATTGGCTGATGACG
AATGGAACCGGTGGTCTGGCCCGGCACAAGATTGGAGCTGGCAGTCTGAA
CGGTTATGGCGGGGCCAATCCCTTCCTGTTCTCCGATTCGGTGCCGGATC
TGAGTGCCCTGAACAACGAAAACCACAATCATCACCTGAGCGGCATCAGC
ACGAACCACTCGACGCCGCAAAAGATACCGCACCACAGCAATGCGAATCT
CAGTCGATACTCCAATGGATATGTCTCGGCCCAGAACAGTTTCACCCAAG
CCGGAGCACTCTACGGATCGCCTAGGCGGATCTTTATAACAGCAGCCTCG
GTTCCATCAG
BS11443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32982-PB | 1653 | CG32982-RB | 1..821 | 17..837 | 4080 | 99.8 | Plus |
CG32982-PA | 2148 | CG32982-RA | 444..1238 | 43..837 | 3950 | 99.8 | Plus |
CG32982-PC | 1716 | CG32982-RC | 91..884 | 44..837 | 3945 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32982-RB | 2426 | CG32982-RB | 216..1056 | 17..856 | 4150 | 99.6 | Plus |
CG32982-RD | 3241 | CG32982-RD | 1057..1871 | 43..856 | 4020 | 99.6 | Plus |
CG32982-RG | 2766 | CG32982-RG | 790..1604 | 43..856 | 4020 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9161383..9161856 | 384..856 | 2305 | 99.6 | Plus |
2L | 23513712 | 2L | 9161129..9161269 | 246..386 | 690 | 99.3 | Plus |
2L | 23513712 | 2L | 9154658..9154765 | 43..150 | 540 | 100 | Plus |
2L | 23513712 | 2L | 9156497..9156596 | 150..249 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:30:31 has no hits.
BS11443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:18 Download gff for
BS11443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-PB | 1..846 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:39:56 Download gff for
BS11443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-PB | 1..846 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:55 Download gff for
BS11443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RB | 206..1061 | 8..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:16:43 Download gff for
BS11443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RB | 206..1061 | 8..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:16:43 Download gff for
BS11443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9151404..9151440 | 8..43 | 91 | -> | Plus |
2L | 9154659..9154765 | 44..150 | 100 | -> | Plus |
2L | 9156498..9156594 | 151..247 | 100 | -> | Plus |
2L | 9161131..9161268 | 248..385 | 99 | -> | Plus |
2L | 9161385..9161841 | 386..842 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:55 Download gff for
BS11443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9151404..9151440 | 8..43 | 91 | -> | Plus |
arm_2L | 9154659..9154765 | 44..150 | 100 | -> | Plus |
arm_2L | 9156498..9156594 | 151..247 | 100 | -> | Plus |
arm_2L | 9161131..9161268 | 248..385 | 99 | -> | Plus |
arm_2L | 9161385..9161841 | 386..842 | 99 | -> | Plus |
BS11443.complete Sequence
1685 bp assembled on 2009-08-24
GenBank Submission: KX805548
> BS11443.complete
GAAGTTATCAGTCGACATGATTTTTTCCACGGATTTGCATTGGCAATCCT
TGCTGGCAGGACGCATTCCGGTGGCCTCCATGACAGGACCCATTAAACGC
GGACTGCTCTGGCAGCAAAGGGATCGGCTCTTCTCTCGCTGGAAGGAGCG
ATACTTTGTGCTCACTCGTGACTACTTGCACTGCTTCAAAAGAGCCTCGG
GATCGGCCAATGAACGTGCCTCGGATATGGGACAGTTTATCTTCAAGGTC
AAGCTGGTGGACGTGGAGAAGGTGGAGTGGCTGAATCGGCGCTCCTACAG
CGCCATTGGTCTGCTACTGGGTCGCGAGGGTCGTGTTCTACTCCGCTGCG
ATGATGGCCTCGAGGATTGGTTCGAGCTGCTGGAGGAATGCACAATGACC
TCCAAGGAGCGCAGACGAGCCCTGAAGATTGCCCAAGGACCCAGATCCCG
AGCCTCATTGGCTGCTCCCGTTTCGCATGCTTCGCTGCAGTTCCAGCATT
TTGGACTCGGAGGCACTTACTCGAGTGCCCTGGACGATTGGCTGATGACG
AATGGAACCGGTGGTCTGGCCCGGCACAAGATTGGAGCTGGCAGTCTGAA
CGGTTATGGCGGGGCCAATCCCTTCCTGTTCTCCGATTCGGTGCCGGATC
TGAGTGCCCTGAACAACGAAAACCACAATCATCACCTGAGCGGCATCAGC
ACGAACCACTCGACGCCGCAAAAGATACCGCACCACAGCAATGCGAATCT
CAGTCGATACTCCAATGGATATGTCTCGGCCCAGAACAGTTTCACCCAAG
CCGGAGCACTCTACGGATCGCCTAGGCGGATCTTTATCAACAGCAGCTTC
GGTTCCAATCAGGTGGTGGATGAGGAGACCGAGGAGACGGAGGTTCAGCT
GAGGAGACCCAGACTGTTCCGGGGAGTTAGCGCTACTCCGGATAATGGCA
ACGAACTGGACCGCGATTGGCTGTACCGGAAGCCAAGGGCGCCCACTGAT
ATGAGGCACTCAGTTCAACCAATGTTACCCACTGGCGGCGGCAGCAACAT
CGGGCTGGCCAAAACCGAACTGGACTGTTCGGCCCATGATAGTGGCCTGG
ACACGCCCCCATCGACGCACCGCCCCTCGAGCTACCGGGAGGCGAGCAGG
GACAGCACAGAGACCAATGGCAGTTCGTCGAGGGGAACACTGCTGAATAA
CTCATCGCCAGGCGGCAGTTTTCGAGCCAAAAAGCTGAGCACCCAAGTAA
GCAATCTCAATCAGTTGAATTCCCTGAACGGATCGAGATACTCGGTGCAG
GATCAACGCATCTTGAAGATGCGCAACAACGAGGAGGATCGCTGTGCCTC
CATCAAGATGGCCAATCGTCTCAATCAGAATCAGGAGCAGGCCACTTACG
ATCCCAACCAGAATCGCTACTATAAGAACGGTAATGCCACGCCCCCCACA
TCACTGACGCCACAGCATACGCCGCAGCACAAACTGACGATGATGCACTA
TGGCAATGGGAATGGGAACATGGGCACCCTGAATGGCAACACCAACGGAT
CGGATCGCATAAACGGATCGGCCATTTTCCGGGAGCGCTACCAACATCCC
GCCCTGGCCGCCATCATCAACGAAGCCCAGGGCCTTAAGTTTCGAGAAGA
ATCAGAAAATATGTGGTAAAAGCTTTCTAGACCAT
BS11443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32982-RB | 1653 | CG32982-PB | 1..1653 | 17..1669 | 8265 | 100 | Plus |
CG32982-RD | 2337 | CG32982-PD | 711..2337 | 43..1669 | 8135 | 100 | Plus |
CG32982-RE | 2382 | CG32982-PE | 757..2382 | 44..1669 | 8130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32982-RB | 2426 | CG32982-RB | 216..1869 | 17..1670 | 8270 | 100 | Plus |
CG32982-RD | 3241 | CG32982-RD | 1057..2684 | 43..1670 | 8140 | 100 | Plus |
CG32982-RE | 3397 | CG32982-RE | 1214..2840 | 44..1670 | 8135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9162074..9162708 | 1012..1646 | 3175 | 100 | Plus |
2L | 23513712 | 2L | 9161383..9162012 | 384..1013 | 3150 | 100 | Plus |
2L | 23513712 | 2L | 9161129..9161269 | 246..386 | 705 | 100 | Plus |
2L | 23513712 | 2L | 9154658..9154765 | 43..150 | 540 | 100 | Plus |
2L | 23513712 | 2L | 9156497..9156596 | 150..249 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:29:24 has no hits.
BS11443.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:02 Download gff for
BS11443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RB | 214..1864 | 17..1667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:06 Download gff for
BS11443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RB | 216..1866 | 17..1667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:47 Download gff for
BS11443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RB | 216..1866 | 17..1667 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:47 Download gff for
BS11443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9151414..9151440 | 17..43 | 100 | -> | Plus |
2L | 9154659..9154765 | 44..150 | 100 | -> | Plus |
2L | 9156498..9156594 | 151..247 | 100 | -> | Plus |
2L | 9161131..9161268 | 248..385 | 100 | -> | Plus |
2L | 9161385..9162012 | 386..1013 | 100 | -> | Plus |
2L | 9162076..9162708 | 1014..1646 | 100 | -> | Plus |
2L | 9163141..9163161 | 1647..1667 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:06 Download gff for
BS11443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9151414..9151440 | 17..43 | 100 | -> | Plus |
arm_2L | 9154659..9154765 | 44..150 | 100 | -> | Plus |
arm_2L | 9156498..9156594 | 151..247 | 100 | -> | Plus |
arm_2L | 9161131..9161268 | 248..385 | 100 | -> | Plus |
arm_2L | 9161385..9162012 | 386..1013 | 100 | -> | Plus |
arm_2L | 9162076..9162708 | 1014..1646 | 100 | -> | Plus |
arm_2L | 9163141..9163161 | 1647..1667 | 100 | | Plus |
BS11443.pep Sequence
Translation from 16 to 1668
> BS11443.pep
MIFSTDLHWQSLLAGRIPVASMTGPIKRGLLWQQRDRLFSRWKERYFVLT
RDYLHCFKRASGSANERASDMGQFIFKVKLVDVEKVEWLNRRSYSAIGLL
LGREGRVLLRCDDGLEDWFELLEECTMTSKERRRALKIAQGPRSRASLAA
PVSHASLQFQHFGLGGTYSSALDDWLMTNGTGGLARHKIGAGSLNGYGGA
NPFLFSDSVPDLSALNNENHNHHLSGISTNHSTPQKIPHHSNANLSRYSN
GYVSAQNSFTQAGALYGSPRRIFINSSFGSNQVVDEETEETEVQLRRPRL
FRGVSATPDNGNELDRDWLYRKPRAPTDMRHSVQPMLPTGGGSNIGLAKT
ELDCSAHDSGLDTPPSTHRPSSYREASRDSTETNGSSSRGTLLNNSSPGG
SFRAKKLSTQVSNLNQLNSLNGSRYSVQDQRILKMRNNEEDRCASIKMAN
RLNQNQEQATYDPNQNRYYKNGNATPPTSLTPQHTPQHKLTMMHYGNGNG
NMGTLNGNTNGSDRINGSAIFRERYQHPALAAIINEAQGLKFREESENMW
*
BS11443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32982-PB | 550 | CG32982-PB | 1..550 | 1..550 | 2906 | 100 | Plus |
CG32982-PE | 793 | CG32982-PE | 253..793 | 10..550 | 2853 | 100 | Plus |
CG32982-PD | 778 | CG32982-PD | 238..778 | 10..550 | 2853 | 100 | Plus |
CG32982-PF | 730 | CG32982-PF | 164..682 | 10..546 | 2701 | 96.3 | Plus |
CG32982-PG | 720 | CG32982-PG | 149..667 | 10..546 | 2701 | 96.3 | Plus |