Clone Sequence Records
BS11447.5prime Sequence
579 bp (578 high quality bases) assembled on 2006-05-08
> BS11447.5prime
GAAGTTATCAGTCGACATGAACGTCAGCGCCGATTTTAAGCCGGTGCCCA
CGCGTGCAGCGTTGGCGCTGCAAAAGAAGCAGGAGAACACCGAATTTCAG
GCACACGTCTTCCACGAATCGCACTTCCAATCGAAAAGTGGAACAAAAAA
GCAGGACGACGGCGTCCAAAAATCGCACAAAACCAAGGAGGGCGGCATGG
AACTGAATCCCGAATTCGATATCAAGAAGGCGCGCCACGAGGTGCTCAAT
TTTGCGATCAAAAACCAGCGTGTGATCAAAAACAAGAGCAAAATGGAAAT
GTTTCAGCTGATCAAGCTGGGCGCCAAGCCGCTGAAGAAGGCCTCCAAAA
ACTACAAGGAGCTGAAGGACGAACGCCAGCGGCTGAAGAATATTCGCGAG
GAGCGCAAGAAGTTCCATCAGTTGGGCAAAAATCAAACGGGCGCCGCCAG
CGTCAAATGCCGAACAAAATCGCAAAAGGAGCGCAACGACAAGAGGCGCG
CGCCCGTTTCACACATCGATCAGCACTACGGCAAGGCGCAGCCCAAGTTT
AAGACGAGAAAATAGAAGCTTTCTAGACC
BS11447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-PA | 549 | CG1738-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-RA | 799 | CG1738-RA | 124..672 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11349172..11349720 | 17..565 | 2745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:23:52 has no hits.
BS11447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:26 Download gff for
BS11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:05 Download gff for
BS11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:49 Download gff for
BS11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 120..681 | 9..575 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:27:47 Download gff for
BS11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 120..681 | 9..575 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:27:47 Download gff for
BS11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11349168..11349729 | 9..575 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:49 Download gff for
BS11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11243201..11243762 | 9..575 | 98 | | Plus |
BS11447.3prime Sequence
579 bp (578 high quality bases) assembled on 2006-05-08
> BS11447.3prime
ATGGTCTAGAAAGCTTCTATTTTCTCGTCTTAAACTTGGGCTGCGCCTTG
CCGTAGTGCTGATCGATGTGTGAAACGGGCGCGCGCCTCTTGTCGTTGCG
CTCCTTTTGCGATTTTGTTCGGCATTTGACGCTGGCGGCGCCCGTTTGAT
TTTTGCCCAACTGATGGAACTTCTTGCGCTCCTCGCGAATATTCTTCAGC
CGCTGGCGTTCGTCCTTCAGCTCCTTGTAGTTTTTGGAGGCCTTCTTCAG
CGGCTTGGCGCCCAGCTTGATCAGCTGAAACATTTCCATTTTGCTCTTGT
TTTTGATCACACGCTGGTTTTTGATCGCAAAATTGAGCACCTCGTGGCGC
GCCTTCTTGATATCGAATTCGGGATTCAGTTCCATGCCGCCCTCCTTGGT
TTTGTGCGATTTTTGGACGCCGTCGTCCTGCTTTTTTGTTCCACTTTTCG
ATTGGAAGTGCGATTCGTGGAAGACGTGTGCCTGAAATTCGGTGTTCTCC
TGCTTCTTTTGCAGCGCCAACGCTGCACGCGTGGGCACCGGCTTAAAATC
GGCGCTGACGTTCATGTCGACTGATAACT
BS11447.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-PA | 549 | CG1738-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-RA | 799 | CG1738-RA | 124..672 | 565..17 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11349172..11349720 | 565..17 | 2745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:46:59 has no hits.
BS11447.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:25 Download gff for
BS11447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:03 Download gff for
BS11447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:34:14 Download gff for
BS11447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 120..681 | 7..573 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:27 Download gff for
BS11447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 120..681 | 7..573 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:27 Download gff for
BS11447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11349168..11349729 | 7..573 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:34:14 Download gff for
BS11447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11243201..11243762 | 7..573 | 98 | | Minus |
BS11447.complete Sequence
581 bp assembled on 2006-11-01
GenBank Submission: FJ636868
> BS11447.complete
GAAGTTATCAGTCGACATGAACGTCAGCGCCGATTTTAAGCCGGTGCCCA
CGCGTGCAGCGTTGGCGCTGCAAAAGAAGCAGGAGAACACCGAATTTCAG
GCACACGTCTTCCACGAATCGCACTTCCAATCGAAAAGTGGAACAAAAAA
GCAGGACGACGGCGTCCAAAAATCGCACAAAACCAAGGAGGGCGGCATGG
AACTGAATCCCGAATTCGATATCAAGAAGGCGCGCCACGAGGTGCTCAAT
TTTGCGATCAAAAACCAGCGTGTGATCAAAAACAAGAGCAAAATGGAAAT
GTTTCAGCTGATCAAGCTGGGCGCCAAGCCGCTGAAGAAGGCCTCCAAAA
ACTACAAGGAGCTGAAGGACGAACGCCAGCGGCTGAAGAATATTCGCGAG
GAGCGCAAGAAGTTCCATCAGTTGGGCAAAAATCAAACGGGCGCCGCCAG
CGTCAAATGCCGAACAAAATCGCAAAAGGAGCGCAACGACAAGAGGCGCG
CGCCCGTTTCACACATCGATCAGCACTACGGCAAGGCGCAGCCCAAGTTT
AAGACGAGAAAATAGAAGCTTTCTAGACCAT
BS11447.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-RA | 549 | CG1738-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-RA | 799 | CG1738-RA | 124..672 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11349172..11349720 | 17..565 | 2745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:37:09 has no hits.
BS11447.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:37 Download gff for
BS11447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:44 Download gff for
BS11447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 115..676 | 9..575 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:14 Download gff for
BS11447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 124..665 | 17..558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:03 Download gff for
BS11447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 124..665 | 17..558 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:03 Download gff for
BS11447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11349172..11349713 | 17..558 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:14 Download gff for
BS11447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11243205..11243746 | 17..558 | 100 | | Plus |
BS11447.pep Sequence
Translation from 16 to 564
> BS11447.pep
MNVSADFKPVPTRAALALQKKQENTEFQAHVFHESHFQSKSGTKKQDDGV
QKSHKTKEGGMELNPEFDIKKARHEVLNFAIKNQRVIKNKSKMEMFQLIK
LGAKPLKKASKNYKELKDERQRLKNIREERKKFHQLGKNQTGAASVKCRT
KSQKERNDKRRAPVSHIDQHYGKAQPKFKTRK*
BS11447.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-PA | 182 | CG1738-PA | 1..182 | 1..182 | 941 | 100 | Plus |