Clone BS11447 Report

Search the DGRC for BS11447

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG1738-RA
Protein status:BS11447.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11447.5prime Sequence

579 bp (578 high quality bases) assembled on 2006-05-08

> BS11447.5prime
GAAGTTATCAGTCGACATGAACGTCAGCGCCGATTTTAAGCCGGTGCCCA
CGCGTGCAGCGTTGGCGCTGCAAAAGAAGCAGGAGAACACCGAATTTCAG
GCACACGTCTTCCACGAATCGCACTTCCAATCGAAAAGTGGAACAAAAAA
GCAGGACGACGGCGTCCAAAAATCGCACAAAACCAAGGAGGGCGGCATGG
AACTGAATCCCGAATTCGATATCAAGAAGGCGCGCCACGAGGTGCTCAAT
TTTGCGATCAAAAACCAGCGTGTGATCAAAAACAAGAGCAAAATGGAAAT
GTTTCAGCTGATCAAGCTGGGCGCCAAGCCGCTGAAGAAGGCCTCCAAAA
ACTACAAGGAGCTGAAGGACGAACGCCAGCGGCTGAAGAATATTCGCGAG
GAGCGCAAGAAGTTCCATCAGTTGGGCAAAAATCAAACGGGCGCCGCCAG
CGTCAAATGCCGAACAAAATCGCAAAAGGAGCGCAACGACAAGAGGCGCG
CGCCCGTTTCACACATCGATCAGCACTACGGCAAGGCGCAGCCCAAGTTT
AAGACGAGAAAATAGAAGCTTTCTAGACC

BS11447.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-PA 549 CG1738-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-RA 799 CG1738-RA 124..672 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11349172..11349720 17..565 2745 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:23:52 has no hits.

BS11447.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:26 Download gff for BS11447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:05 Download gff for BS11447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:49 Download gff for BS11447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..681 9..575 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:27:47 Download gff for BS11447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..681 9..575 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:27:47 Download gff for BS11447.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11349168..11349729 9..575 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:49 Download gff for BS11447.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11243201..11243762 9..575 98   Plus

BS11447.3prime Sequence

579 bp (578 high quality bases) assembled on 2006-05-08

> BS11447.3prime
ATGGTCTAGAAAGCTTCTATTTTCTCGTCTTAAACTTGGGCTGCGCCTTG
CCGTAGTGCTGATCGATGTGTGAAACGGGCGCGCGCCTCTTGTCGTTGCG
CTCCTTTTGCGATTTTGTTCGGCATTTGACGCTGGCGGCGCCCGTTTGAT
TTTTGCCCAACTGATGGAACTTCTTGCGCTCCTCGCGAATATTCTTCAGC
CGCTGGCGTTCGTCCTTCAGCTCCTTGTAGTTTTTGGAGGCCTTCTTCAG
CGGCTTGGCGCCCAGCTTGATCAGCTGAAACATTTCCATTTTGCTCTTGT
TTTTGATCACACGCTGGTTTTTGATCGCAAAATTGAGCACCTCGTGGCGC
GCCTTCTTGATATCGAATTCGGGATTCAGTTCCATGCCGCCCTCCTTGGT
TTTGTGCGATTTTTGGACGCCGTCGTCCTGCTTTTTTGTTCCACTTTTCG
ATTGGAAGTGCGATTCGTGGAAGACGTGTGCCTGAAATTCGGTGTTCTCC
TGCTTCTTTTGCAGCGCCAACGCTGCACGCGTGGGCACCGGCTTAAAATC
GGCGCTGACGTTCATGTCGACTGATAACT

BS11447.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-PA 549 CG1738-RA 1..549 565..17 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-RA 799 CG1738-RA 124..672 565..17 2745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11349172..11349720 565..17 2745 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:46:59 has no hits.

BS11447.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:25 Download gff for BS11447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-PA 1..549 17..565 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:03 Download gff for BS11447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-PA 1..549 17..565 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:34:14 Download gff for BS11447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..681 7..573 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:27 Download gff for BS11447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..681 7..573 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:27 Download gff for BS11447.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11349168..11349729 7..573 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:34:14 Download gff for BS11447.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11243201..11243762 7..573 98   Minus

BS11447.complete Sequence

581 bp assembled on 2006-11-01

GenBank Submission: FJ636868

> BS11447.complete
GAAGTTATCAGTCGACATGAACGTCAGCGCCGATTTTAAGCCGGTGCCCA
CGCGTGCAGCGTTGGCGCTGCAAAAGAAGCAGGAGAACACCGAATTTCAG
GCACACGTCTTCCACGAATCGCACTTCCAATCGAAAAGTGGAACAAAAAA
GCAGGACGACGGCGTCCAAAAATCGCACAAAACCAAGGAGGGCGGCATGG
AACTGAATCCCGAATTCGATATCAAGAAGGCGCGCCACGAGGTGCTCAAT
TTTGCGATCAAAAACCAGCGTGTGATCAAAAACAAGAGCAAAATGGAAAT
GTTTCAGCTGATCAAGCTGGGCGCCAAGCCGCTGAAGAAGGCCTCCAAAA
ACTACAAGGAGCTGAAGGACGAACGCCAGCGGCTGAAGAATATTCGCGAG
GAGCGCAAGAAGTTCCATCAGTTGGGCAAAAATCAAACGGGCGCCGCCAG
CGTCAAATGCCGAACAAAATCGCAAAAGGAGCGCAACGACAAGAGGCGCG
CGCCCGTTTCACACATCGATCAGCACTACGGCAAGGCGCAGCCCAAGTTT
AAGACGAGAAAATAGAAGCTTTCTAGACCAT

BS11447.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-RA 549 CG1738-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-RA 799 CG1738-RA 124..672 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11349172..11349720 17..565 2745 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:37:09 has no hits.

BS11447.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:37 Download gff for BS11447.complete
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:44 Download gff for BS11447.complete
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 115..676 9..575 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:14 Download gff for BS11447.complete
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 124..665 17..558 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:03 Download gff for BS11447.complete
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 124..665 17..558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:03 Download gff for BS11447.complete
Subject Subject Range Query Range Percent Splice Strand
X 11349172..11349713 17..558 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:14 Download gff for BS11447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11243205..11243746 17..558 100   Plus

BS11447.pep Sequence

Translation from 16 to 564

> BS11447.pep
MNVSADFKPVPTRAALALQKKQENTEFQAHVFHESHFQSKSGTKKQDDGV
QKSHKTKEGGMELNPEFDIKKARHEVLNFAIKNQRVIKNKSKMEMFQLIK
LGAKPLKKASKNYKELKDERQRLKNIREERKKFHQLGKNQTGAASVKCRT
KSQKERNDKRRAPVSHIDQHYGKAQPKFKTRK*

BS11447.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-PA 182 CG1738-PA 1..182 1..182 941 100 Plus