Clone BS11448 Report

Search the DGRC for BS11448

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG17337-RA
Protein status:BS11448.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11448.3prime Sequence

897 bp (788 high quality bases) assembled on 2006-05-08

> BS11448.3prime
ATGGTCTAGAAAGCTTTTATAATTTTCCCACTTCGTGCAGATAGGCGCCA
AGAAGTTTAGTGCCTTCGATGTAATTGTAAATATCGATTTTCTCATTTTG
AGAATGGGCACCGTCGTCACATGCACCCACTGGCACAAGGATAACGTTTT
TACCAGTGGCTTCCTGCAATGTTAACGTTACTGGAATAGATCCCCCTTCG
CGGGTCATATCTGGTTCCACATTGAAAACATGCTTTATGGCTCTTTTTGC
AGCCTCATAATGAGGATGGTTAGGGTCCTCAGTCCAGGGCTTGCCAGCTG
AGAGCATTGTAACCTTCATTTTGTTAGGAGATCCTCGCTCGGCCCATTTA
TCATTAAGGTATTTTACAACACACTCCTCAATATGCTTTGGATCTTGGTT
GGGGACAAGGCGAATAGAGAACTTACCAATAACCTTCTTCGGAATGACAG
TTTTTGCGCCTGGCTCATAAAATGCACCTTCAATTCCGTGAACAGAAAGA
CTGGGATAGCGCCACCTGGCTTGAAGTAACCTTGTTTTATCGCCATTATG
CGGCAGCTGTTCAACACCAATGTCTTTCTTGTACTCAGAAACTTCAAAGT
CTATGTTCTCATATATAGATTGCTCGTTCTTAATCTGTGGTGCGACGTCG
CGATCCACACCAGGGACTAGGATATTTGTATCTTTATCGACAAGAATGCT
CAGCAAATGACACAGATCCGGCATTGCTTCGTGAACTGTACCCCCAAAAA
CTCCACTATGCAAGTCTTTGCTGGAGCATTCCACCTCCACTTTGAAGTAT
GCCAAACCGCGAAGCCCATATGTGAGGCAAGGGCGTTTTTTTCAAGCCAG
TAGTTATCGGATATGCAACAAAATCAACATCCGCTAAGAATTATCTT

BS11448.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-PA 1437 CG17337-RA 611..1437 843..17 4085 99.7 Minus
CG17337-PA 1437 CG17337-RA 585..617 868..836 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-RC 1522 CG17337-RC 514..1399 897..15 4325 99.4 Minus
CG17337-RA 1661 CG17337-RA 653..1538 897..15 4325 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5699415..5699682 578..311 1340 100 Minus
2R 25286936 2R 5699735..5699988 315..62 1270 100 Minus
2R 25286936 2R 5698979..5699226 890..645 1110 98.4 Minus
2R 25286936 2R 5699286..5699358 646..574 350 98.6 Minus
2R 25286936 2R 5700043..5700089 61..15 235 100 Minus
Blast to na_te.dros performed on 2015-02-02 20:38:45 has no hits.

BS11448.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:28 Download gff for BS11448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-PA 554..1437 17..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:07 Download gff for BS11448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-PA 554..1437 17..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:40 Download gff for BS11448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 653..1538 15..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:08 Download gff for BS11448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 653..1538 15..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:08 Download gff for BS11448.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5698971..5699224 647..897 98 -> Minus
2R 5699286..5699353 579..646 100 -> Minus
2R 5699415..5699679 314..578 100 -> Minus
2R 5699737..5699988 62..313 100 -> Minus
2R 5700043..5700089 15..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:40 Download gff for BS11448.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1586791..1586858 579..646 100 -> Minus
arm_2R 1586920..1587184 314..578 100 -> Minus
arm_2R 1586476..1586729 647..897 98 -> Minus
arm_2R 1587242..1587493 62..313 100 -> Minus
arm_2R 1587548..1587594 15..61 100   Minus

BS11448.5prime Sequence

860 bp (838 high quality bases) assembled on 2006-05-08

> BS11448.5prime
GAAGTTATCAGTCGACATGCCCGAGTTATCAAGTGAACTTCAAAAATTCT
TTGCCTTTGTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAACC
GTTGTGGGTATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGAT
CGGTCGTATGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCCG
AGACAGAGCTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGATT
ATACCTCTACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTAA
GAAGACCGTGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAGG
AAGATGGATGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAAA
CTGTTTGGACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGAT
CCACGCTATCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAATG
TTAAATTCGTATTTGAGGGAATGGAGGAAAGCGGCAGCGAAGGCCTCGAT
GACTTGTTATTGGAACGTAAAGATAATTTCTTAGCGGATGTTGATTTTGT
TTGCATATCCGATAACTACTGGCTTGGAAAAAAACGCCCTTGCCTCACAT
ATGGGCTTCGCGGTTTGGCATACTTTCAAGTGGAGGTGGAATGCTCCAGC
AAAGACTTGCATAGTGGAGTTTTTGGGGGTACAGTTCACGAAGCAATGCC
GGATCTGTGTCATTTGCTGAGCATTCTTGTCGATAAAGATACAAATATCC
TAGTCCCTGGTGTGGATCGCGACGTCGCACCACAGATTAAGAACGAGCAA
TCTATATATG

BS11448.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-PA 1437 CG17337-RA 1..844 17..860 4220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-RA 1661 CG17337-RA 100..943 17..860 4220 100 Plus
CG17337-RC 1522 CG17337-RC 1..804 57..860 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5698456..5699226 55..825 3855 100 Plus
2R 25286936 2R 5697971..5698008 17..54 190 100 Plus
2R 25286936 2R 5699286..5699322 824..860 185 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:47:56 has no hits.

BS11448.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:29 Download gff for BS11448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-PA 1..844 17..860 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:09 Download gff for BS11448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-PA 1..844 17..860 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:14 Download gff for BS11448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 94..943 10..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:22:27 Download gff for BS11448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 94..943 10..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:22:27 Download gff for BS11448.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5697965..5698008 10..54 93 -> Plus
2R 5698456..5699224 55..823 100 -> Plus
2R 5699286..5699322 824..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:14 Download gff for BS11448.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1585470..1585513 10..54 93 -> Plus
arm_2R 1585961..1586729 55..823 100 -> Plus
arm_2R 1586791..1586827 824..860 100   Plus

BS11448.complete Sequence

1469 bp assembled on 2006-11-01

GenBank Submission: FJ636869

> BS11448.complete
GAAGTTATCAGTCGACATGCCCGAGTTATCAAGTGAACTTCAAAAATTCT
TTGCCTTTGTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAACC
GTTGTGGGTATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGAT
CGGTCGTATGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCCG
AGACAGAGCTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGATT
ATACCTCTACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTAA
GAAGACCGTGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAGG
AAGATGGATGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAAA
CTGTTTGGACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGAT
CCACGCTATCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAATG
TTAAATTCGTATTTGAGGGAATGGAGGAAAGCGGCAGCGAAGGCCTCGAT
GACTTGTTATTGGAACGTAAAGATAATTTCTTAGCGGATGTTGATTTTGT
TTGCATATCCGATAACTACTGGCTTGGAAAAAAACGCCCTTGCCTCACAT
ATGGGCTTCGCGGTTTGGCATACTTTCAAGTGGAGGTGGAATGCTCCAGC
AAAGACTTGCATAGTGGAGTTTTTGGGGGTACAGTTCACGAAGCAATGCC
GGATCTGTGTCATTTGCTGAGCATTCTTGTCGATAAAGATACAAATATCC
TAGTCCCTGGTGTGGATCGCGACGTCGCACCACAGATTAAGAACGAGCAA
TCTATATATGAGAACATAGACTTTGAAGTTTCTGAGTACAAGAAAGACAT
TGGTGTTGAACAGCTGCCGCATAATGGCGATAAAACAAGGTTACTTCAAG
CCAGGTGGCGCTATCCCAGTCTTTCTGTTCACGGAATTGAAGGTGCATTT
TATGAGCCAGGCGCAAAAACTGTCATTCCGAAGAAGGTTATTGGTAAGTT
CTCTATTCGCCTTGTCCCCAACCAAGATCCAAAGCATATTGAGGAGTGTG
TTGTAAAATACCTTAATGATAAATGGGCCGAGCGAGGATCTCCTAACAAA
ATGAAGGTTACAATGCTCTCAGCTGGCAAGCCCTGGACTGAGGACCCTAA
CCATCCTCATTATGAGGCTGCAAAAAGAGCCATAAAGCATGTTTTCAATG
TGGAACCAGATATGACCCGCGAAGGGGGATCTATTCCAGTAACGTTAACA
TTGCAGGAAGCCACTGGTAAAAACGTTATCCTTGTGCCAGTGGGTGCATG
TGACGACGGTGCCCATTCTCAAAATGAGAAAATCGATATTTACAATTACA
TCGAAGGCACTAAACTTCTTGGCGCCTATCTGCACGAAGTGGGAAAATTA
TAAAAGCTTTCTAGACCAT

BS11448.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-RA 1437 CG17337-PA 1..1437 17..1453 7185 100 Plus
CG17337-RC 1296 CG17337-PC 1..1296 158..1453 6480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-RA 1661 CG17337-RA 100..1538 17..1455 7195 100 Plus
CG17337-RC 1522 CG17337-RC 1..1399 57..1455 6995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5698456..5699226 55..825 3855 100 Plus
2R 25286936 2R 5699415..5699682 892..1159 1340 100 Plus
2R 25286936 2R 5699735..5699988 1155..1408 1270 100 Plus
2R 25286936 2R 5699286..5699358 824..896 350 98.6 Plus
2R 25286936 2R 5700043..5700089 1409..1455 235 100 Plus
2R 25286936 2R 5697971..5698008 17..54 190 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:54:29 has no hits.

BS11448.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:38 Download gff for BS11448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1437 17..1453 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:46 Download gff for BS11448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 112..1556 10..1455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:08 Download gff for BS11448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 100..1534 17..1451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:38 Download gff for BS11448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 112..1556 10..1455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:15 Download gff for BS11448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 100..1534 17..1451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:15 Download gff for BS11448.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5697971..5698008 17..54 100 -> Plus
2R 5698456..5699224 55..823 100 -> Plus
2R 5699286..5699353 824..891 100 -> Plus
2R 5699415..5699679 892..1156 100 -> Plus
2R 5699737..5699988 1157..1408 100 -> Plus
2R 5700043..5700085 1409..1451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:08 Download gff for BS11448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1585476..1585513 17..54 100 -> Plus
arm_2R 1585961..1586729 55..823 100 -> Plus
arm_2R 1586791..1586858 824..891 100 -> Plus
arm_2R 1586920..1587184 892..1156 100 -> Plus
arm_2R 1587242..1587493 1157..1408 100 -> Plus
arm_2R 1587548..1587590 1409..1451 100   Plus

BS11448.pep Sequence

Translation from 16 to 1452

> BS11448.pep
MPELSSELQKFFAFVDGKKEDYIGALKTVVGIQSVSAWPEKRGEIGRMVE
WTADRLRSLGAETELADVGQQTLPNGQIIPLPKVLLGTLGKDPSKKTVLV
YGHLDVQPALKEDGWNTNPFELTEVDGKLFGRGASDDKGPVLCWIHAIEA
YQKLNIALPVNVKFVFEGMEESGSEGLDDLLLERKDNFLADVDFVCISDN
YWLGKKRPCLTYGLRGLAYFQVEVECSSKDLHSGVFGGTVHEAMPDLCHL
LSILVDKDTNILVPGVDRDVAPQIKNEQSIYENIDFEVSEYKKDIGVEQL
PHNGDKTRLLQARWRYPSLSVHGIEGAFYEPGAKTVIPKKVIGKFSIRLV
PNQDPKHIEECVVKYLNDKWAERGSPNKMKVTMLSAGKPWTEDPNHPHYE
AAKRAIKHVFNVEPDMTREGGSIPVTLTLQEATGKNVILVPVGACDDGAH
SQNEKIDIYNYIEGTKLLGAYLHEVGKL*

BS11448.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-PA 478 CG17337-PA 1..478 1..478 2532 100 Plus
CG17337-PC 431 CG17337-PC 1..431 48..478 2292 100 Plus