Clone Sequence Records
BS11448.3prime Sequence
897 bp (788 high quality bases) assembled on 2006-05-08
> BS11448.3prime
ATGGTCTAGAAAGCTTTTATAATTTTCCCACTTCGTGCAGATAGGCGCCA
AGAAGTTTAGTGCCTTCGATGTAATTGTAAATATCGATTTTCTCATTTTG
AGAATGGGCACCGTCGTCACATGCACCCACTGGCACAAGGATAACGTTTT
TACCAGTGGCTTCCTGCAATGTTAACGTTACTGGAATAGATCCCCCTTCG
CGGGTCATATCTGGTTCCACATTGAAAACATGCTTTATGGCTCTTTTTGC
AGCCTCATAATGAGGATGGTTAGGGTCCTCAGTCCAGGGCTTGCCAGCTG
AGAGCATTGTAACCTTCATTTTGTTAGGAGATCCTCGCTCGGCCCATTTA
TCATTAAGGTATTTTACAACACACTCCTCAATATGCTTTGGATCTTGGTT
GGGGACAAGGCGAATAGAGAACTTACCAATAACCTTCTTCGGAATGACAG
TTTTTGCGCCTGGCTCATAAAATGCACCTTCAATTCCGTGAACAGAAAGA
CTGGGATAGCGCCACCTGGCTTGAAGTAACCTTGTTTTATCGCCATTATG
CGGCAGCTGTTCAACACCAATGTCTTTCTTGTACTCAGAAACTTCAAAGT
CTATGTTCTCATATATAGATTGCTCGTTCTTAATCTGTGGTGCGACGTCG
CGATCCACACCAGGGACTAGGATATTTGTATCTTTATCGACAAGAATGCT
CAGCAAATGACACAGATCCGGCATTGCTTCGTGAACTGTACCCCCAAAAA
CTCCACTATGCAAGTCTTTGCTGGAGCATTCCACCTCCACTTTGAAGTAT
GCCAAACCGCGAAGCCCATATGTGAGGCAAGGGCGTTTTTTTCAAGCCAG
TAGTTATCGGATATGCAACAAAATCAACATCCGCTAAGAATTATCTT
BS11448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-PA | 1437 | CG17337-RA | 611..1437 | 843..17 | 4085 | 99.7 | Minus |
CG17337-PA | 1437 | CG17337-RA | 585..617 | 868..836 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-RC | 1522 | CG17337-RC | 514..1399 | 897..15 | 4325 | 99.4 | Minus |
CG17337-RA | 1661 | CG17337-RA | 653..1538 | 897..15 | 4325 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5699415..5699682 | 578..311 | 1340 | 100 | Minus |
2R | 25286936 | 2R | 5699735..5699988 | 315..62 | 1270 | 100 | Minus |
2R | 25286936 | 2R | 5698979..5699226 | 890..645 | 1110 | 98.4 | Minus |
2R | 25286936 | 2R | 5699286..5699358 | 646..574 | 350 | 98.6 | Minus |
2R | 25286936 | 2R | 5700043..5700089 | 61..15 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:38:45 has no hits.
BS11448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:28 Download gff for
BS11448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-PA | 554..1437 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:07 Download gff for
BS11448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-PA | 554..1437 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:40 Download gff for
BS11448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 653..1538 | 15..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:08 Download gff for
BS11448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 653..1538 | 15..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:08 Download gff for
BS11448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5698971..5699224 | 647..897 | 98 | -> | Minus |
2R | 5699286..5699353 | 579..646 | 100 | -> | Minus |
2R | 5699415..5699679 | 314..578 | 100 | -> | Minus |
2R | 5699737..5699988 | 62..313 | 100 | -> | Minus |
2R | 5700043..5700089 | 15..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:40 Download gff for
BS11448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1586791..1586858 | 579..646 | 100 | -> | Minus |
arm_2R | 1586920..1587184 | 314..578 | 100 | -> | Minus |
arm_2R | 1586476..1586729 | 647..897 | 98 | -> | Minus |
arm_2R | 1587242..1587493 | 62..313 | 100 | -> | Minus |
arm_2R | 1587548..1587594 | 15..61 | 100 | | Minus |
BS11448.5prime Sequence
860 bp (838 high quality bases) assembled on 2006-05-08
> BS11448.5prime
GAAGTTATCAGTCGACATGCCCGAGTTATCAAGTGAACTTCAAAAATTCT
TTGCCTTTGTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAACC
GTTGTGGGTATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGAT
CGGTCGTATGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCCG
AGACAGAGCTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGATT
ATACCTCTACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTAA
GAAGACCGTGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAGG
AAGATGGATGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAAA
CTGTTTGGACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGAT
CCACGCTATCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAATG
TTAAATTCGTATTTGAGGGAATGGAGGAAAGCGGCAGCGAAGGCCTCGAT
GACTTGTTATTGGAACGTAAAGATAATTTCTTAGCGGATGTTGATTTTGT
TTGCATATCCGATAACTACTGGCTTGGAAAAAAACGCCCTTGCCTCACAT
ATGGGCTTCGCGGTTTGGCATACTTTCAAGTGGAGGTGGAATGCTCCAGC
AAAGACTTGCATAGTGGAGTTTTTGGGGGTACAGTTCACGAAGCAATGCC
GGATCTGTGTCATTTGCTGAGCATTCTTGTCGATAAAGATACAAATATCC
TAGTCCCTGGTGTGGATCGCGACGTCGCACCACAGATTAAGAACGAGCAA
TCTATATATG
BS11448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-PA | 1437 | CG17337-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-RA | 1661 | CG17337-RA | 100..943 | 17..860 | 4220 | 100 | Plus |
CG17337-RC | 1522 | CG17337-RC | 1..804 | 57..860 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5698456..5699226 | 55..825 | 3855 | 100 | Plus |
2R | 25286936 | 2R | 5697971..5698008 | 17..54 | 190 | 100 | Plus |
2R | 25286936 | 2R | 5699286..5699322 | 824..860 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:47:56 has no hits.
BS11448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:29 Download gff for
BS11448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:09 Download gff for
BS11448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:14 Download gff for
BS11448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 94..943 | 10..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:22:27 Download gff for
BS11448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 94..943 | 10..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:22:27 Download gff for
BS11448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5697965..5698008 | 10..54 | 93 | -> | Plus |
2R | 5698456..5699224 | 55..823 | 100 | -> | Plus |
2R | 5699286..5699322 | 824..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:14 Download gff for
BS11448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1585470..1585513 | 10..54 | 93 | -> | Plus |
arm_2R | 1585961..1586729 | 55..823 | 100 | -> | Plus |
arm_2R | 1586791..1586827 | 824..860 | 100 | | Plus |
BS11448.complete Sequence
1469 bp assembled on 2006-11-01
GenBank Submission: FJ636869
> BS11448.complete
GAAGTTATCAGTCGACATGCCCGAGTTATCAAGTGAACTTCAAAAATTCT
TTGCCTTTGTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAACC
GTTGTGGGTATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGAT
CGGTCGTATGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCCG
AGACAGAGCTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGATT
ATACCTCTACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTAA
GAAGACCGTGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAGG
AAGATGGATGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAAA
CTGTTTGGACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGAT
CCACGCTATCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAATG
TTAAATTCGTATTTGAGGGAATGGAGGAAAGCGGCAGCGAAGGCCTCGAT
GACTTGTTATTGGAACGTAAAGATAATTTCTTAGCGGATGTTGATTTTGT
TTGCATATCCGATAACTACTGGCTTGGAAAAAAACGCCCTTGCCTCACAT
ATGGGCTTCGCGGTTTGGCATACTTTCAAGTGGAGGTGGAATGCTCCAGC
AAAGACTTGCATAGTGGAGTTTTTGGGGGTACAGTTCACGAAGCAATGCC
GGATCTGTGTCATTTGCTGAGCATTCTTGTCGATAAAGATACAAATATCC
TAGTCCCTGGTGTGGATCGCGACGTCGCACCACAGATTAAGAACGAGCAA
TCTATATATGAGAACATAGACTTTGAAGTTTCTGAGTACAAGAAAGACAT
TGGTGTTGAACAGCTGCCGCATAATGGCGATAAAACAAGGTTACTTCAAG
CCAGGTGGCGCTATCCCAGTCTTTCTGTTCACGGAATTGAAGGTGCATTT
TATGAGCCAGGCGCAAAAACTGTCATTCCGAAGAAGGTTATTGGTAAGTT
CTCTATTCGCCTTGTCCCCAACCAAGATCCAAAGCATATTGAGGAGTGTG
TTGTAAAATACCTTAATGATAAATGGGCCGAGCGAGGATCTCCTAACAAA
ATGAAGGTTACAATGCTCTCAGCTGGCAAGCCCTGGACTGAGGACCCTAA
CCATCCTCATTATGAGGCTGCAAAAAGAGCCATAAAGCATGTTTTCAATG
TGGAACCAGATATGACCCGCGAAGGGGGATCTATTCCAGTAACGTTAACA
TTGCAGGAAGCCACTGGTAAAAACGTTATCCTTGTGCCAGTGGGTGCATG
TGACGACGGTGCCCATTCTCAAAATGAGAAAATCGATATTTACAATTACA
TCGAAGGCACTAAACTTCTTGGCGCCTATCTGCACGAAGTGGGAAAATTA
TAAAAGCTTTCTAGACCAT
BS11448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-RA | 1437 | CG17337-PA | 1..1437 | 17..1453 | 7185 | 100 | Plus |
CG17337-RC | 1296 | CG17337-PC | 1..1296 | 158..1453 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-RA | 1661 | CG17337-RA | 100..1538 | 17..1455 | 7195 | 100 | Plus |
CG17337-RC | 1522 | CG17337-RC | 1..1399 | 57..1455 | 6995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5698456..5699226 | 55..825 | 3855 | 100 | Plus |
2R | 25286936 | 2R | 5699415..5699682 | 892..1159 | 1340 | 100 | Plus |
2R | 25286936 | 2R | 5699735..5699988 | 1155..1408 | 1270 | 100 | Plus |
2R | 25286936 | 2R | 5699286..5699358 | 824..896 | 350 | 98.6 | Plus |
2R | 25286936 | 2R | 5700043..5700089 | 1409..1455 | 235 | 100 | Plus |
2R | 25286936 | 2R | 5697971..5698008 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:54:29 has no hits.
BS11448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:38 Download gff for
BS11448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 1..1437 | 17..1453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:46 Download gff for
BS11448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 112..1556 | 10..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:08 Download gff for
BS11448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 100..1534 | 17..1451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:38 Download gff for
BS11448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 112..1556 | 10..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:15 Download gff for
BS11448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 100..1534 | 17..1451 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:15 Download gff for
BS11448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5697971..5698008 | 17..54 | 100 | -> | Plus |
2R | 5698456..5699224 | 55..823 | 100 | -> | Plus |
2R | 5699286..5699353 | 824..891 | 100 | -> | Plus |
2R | 5699415..5699679 | 892..1156 | 100 | -> | Plus |
2R | 5699737..5699988 | 1157..1408 | 100 | -> | Plus |
2R | 5700043..5700085 | 1409..1451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:08 Download gff for
BS11448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1585476..1585513 | 17..54 | 100 | -> | Plus |
arm_2R | 1585961..1586729 | 55..823 | 100 | -> | Plus |
arm_2R | 1586791..1586858 | 824..891 | 100 | -> | Plus |
arm_2R | 1586920..1587184 | 892..1156 | 100 | -> | Plus |
arm_2R | 1587242..1587493 | 1157..1408 | 100 | -> | Plus |
arm_2R | 1587548..1587590 | 1409..1451 | 100 | | Plus |
BS11448.pep Sequence
Translation from 16 to 1452
> BS11448.pep
MPELSSELQKFFAFVDGKKEDYIGALKTVVGIQSVSAWPEKRGEIGRMVE
WTADRLRSLGAETELADVGQQTLPNGQIIPLPKVLLGTLGKDPSKKTVLV
YGHLDVQPALKEDGWNTNPFELTEVDGKLFGRGASDDKGPVLCWIHAIEA
YQKLNIALPVNVKFVFEGMEESGSEGLDDLLLERKDNFLADVDFVCISDN
YWLGKKRPCLTYGLRGLAYFQVEVECSSKDLHSGVFGGTVHEAMPDLCHL
LSILVDKDTNILVPGVDRDVAPQIKNEQSIYENIDFEVSEYKKDIGVEQL
PHNGDKTRLLQARWRYPSLSVHGIEGAFYEPGAKTVIPKKVIGKFSIRLV
PNQDPKHIEECVVKYLNDKWAERGSPNKMKVTMLSAGKPWTEDPNHPHYE
AAKRAIKHVFNVEPDMTREGGSIPVTLTLQEATGKNVILVPVGACDDGAH
SQNEKIDIYNYIEGTKLLGAYLHEVGKL*
BS11448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-PA | 478 | CG17337-PA | 1..478 | 1..478 | 2532 | 100 | Plus |
CG17337-PC | 431 | CG17337-PC | 1..431 | 48..478 | 2292 | 100 | Plus |