Clone Sequence Records
BS11449.3prime Sequence
886 bp (823 high quality bases) assembled on 2006-05-08
> BS11449.3prime
ATGGTCTAGAAAGCTTTCAAATTCTCGACTCCAGCTCCCGGAACTCGGCA
GGATCCGTGAAACGTACGGTCAAAATATAGAACAGTGTGGGGAAGGGCAC
CAAGCACATAAAGGCATAGTGGTAATTCAGGGAGGTGAGGCCGTAGGCCA
ACAACATCCAGTGCACAGCTATGATGACCACGTTTTTTAACTCCCACACC
GACGAGTGAACCAATGCCTTTAGGGTTTGATCCAGTTTGAGGGAATAGTG
GATGGCATTGGCTACCATGGATATGGCCACGCTAAGGTACGGAAAGGAGT
AATAGATCAACCCACATCCTAACGCATGGATAAAGGTGAGCAGGGGCAGG
AAGTAAAGAGCCGAGTAAATCGGCGCCTTGCTTCTGCCCCCCACATCCAT
AATTTTGCTGACTAGCGGGCGTATGAGAAACATGTTCACCAGGCACAGAA
AGTAGAAAACCAGCACGATGGTTTGCAATGGGTAAACTGCCTCCTGGGTG
CAGTAGACTCGTGCCTCATAATTGGGGCTGGGGTTGTAAAACAATGTGTA
CCAGTCAGTAAGTTTTCGAACATCACAGGCGTAGAGGCGCAGCTCCCACA
TGGGCTCCATTAGCAAGGTGGCGAGGATGGCAGATATGGCAACCTCAACG
AAAGCGCTGGCCGTCAAGATCAGCTGCTTCCGCGAAAACTTGCGATCCTT
GGCGTCCATGTCAATGAAAAAGCAGTGCATCATAAGTGGCAGCATGGTCA
TGAATCCCAGGTATAGCCAGGAGTACGTGCTTAACTCGTCGCGGCATGGA
GAGCATGCGTAACTTTGGTTCACCCGAGATCCTCTGGGACAGACCCCGCA
GCTGCTCCCGCTGTTGTTTCCTAGCGGTGATCGCCC
BS11449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-PA | 915 | CG2126-RA | 46..915 | 886..17 | 4325 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-RB | 1317 | CG2126-RB | 146..1015 | 886..17 | 4335 | 99.9 | Minus |
CG2126-RA | 1317 | CG2126-RA | 146..1015 | 886..17 | 4335 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31775983..31776196 | 476..689 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 31775748..31775920 | 304..476 | 865 | 100 | Plus |
3R | 32079331 | 3R | 31775351..31775504 | 17..170 | 770 | 100 | Plus |
3R | 32079331 | 3R | 31776247..31776383 | 688..824 | 685 | 100 | Plus |
3R | 32079331 | 3R | 31775559..31775693 | 169..303 | 675 | 100 | Plus |
3R | 32079331 | 3R | 31776443..31776507 | 822..886 | 310 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:29:23 has no hits.
BS11449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:31 Download gff for
BS11449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-PA | 46..915 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:10 Download gff for
BS11449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-PA | 46..915 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:17 Download gff for
BS11449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 146..1018 | 13..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:31 Download gff for
BS11449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 146..1018 | 13..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:31 Download gff for
BS11449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31775348..31775502 | 13..168 | 98 | <- | Plus |
3R | 31775559..31775693 | 169..303 | 100 | <- | Plus |
3R | 31775748..31775920 | 304..476 | 100 | <- | Plus |
3R | 31775984..31776196 | 477..689 | 100 | <- | Plus |
3R | 31776249..31776382 | 690..823 | 100 | <- | Plus |
3R | 31776445..31776507 | 824..886 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:17 Download gff for
BS11449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27601470..27601642 | 304..476 | 100 | <- | Plus |
arm_3R | 27601070..27601224 | 13..168 | 98 | <- | Plus |
arm_3R | 27601281..27601415 | 169..303 | 100 | <- | Plus |
arm_3R | 27601706..27601918 | 477..689 | 100 | <- | Plus |
arm_3R | 27601971..27602104 | 690..823 | 100 | <- | Plus |
arm_3R | 27602167..27602229 | 824..886 | 98 | | Plus |
BS11449.5prime Sequence
907 bp (804 high quality bases) assembled on 2006-05-08
> BS11449.5prime
GAAGTTATCAGTCGACATGAGAATGTACGACGCGTTGGAACGCTGCCCAG
GAGCCTACTGTGGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGC
GGGGTCTGTCCCAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCC
ATGCCGCGACGAGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGA
CCATGCTGCCACTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAG
GATCGCAAGTTTTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGT
TGAGGTTGCCATATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGT
GGGAGCTGCGCCTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTAC
ACATTGTTTTACAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCAC
CCAGGAGGCAGTTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTC
TGTGCCTGGTGAACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATG
GATGTGGGGGGCAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCT
GCCCCTGCTCACCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACT
CCTTTCCGTACCTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCAC
TATTCCCTCAAACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGT
GTGGGAGTTAAAAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGG
CCTACGGCCTCACCTCCCTGAATTACACTATGCCTTTATGTGCTTGGTGC
CCTTCCCACACTGTTCTATATTTTGACCGTACGTTTCACGGGATCTGCCG
AGTTTCC
BS11449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-PA | 915 | CG2126-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
CG2126-PA | 915 | CG2126-RA | 841..877 | 855..891 | 185 | 100 | Plus |
CG2126-PA | 915 | CG2126-RA | 811..842 | 826..857 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-RB | 1317 | CG2126-RB | 100..990 | 16..904 | 4360 | 99.6 | Plus |
CG2126-RA | 1317 | CG2126-RA | 100..990 | 16..904 | 4360 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31775983..31776196 | 472..259 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 31775748..31775920 | 644..472 | 865 | 100 | Minus |
3R | 32079331 | 3R | 31776247..31776383 | 260..124 | 685 | 100 | Minus |
3R | 32079331 | 3R | 31775559..31775693 | 779..645 | 675 | 100 | Minus |
3R | 32079331 | 3R | 31776443..31776553 | 126..16 | 555 | 100 | Minus |
3R | 32079331 | 3R | 31775376..31775504 | 904..778 | 500 | 96.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:25:25 has no hits.
BS11449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:32 Download gff for
BS11449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-PA | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:12 Download gff for
BS11449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-PA | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:08 Download gff for
BS11449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 100..992 | 16..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:02 Download gff for
BS11449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 100..992 | 16..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:02 Download gff for
BS11449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31775984..31776196 | 259..471 | 100 | <- | Minus |
3R | 31776249..31776382 | 125..258 | 100 | <- | Minus |
3R | 31776445..31776553 | 16..124 | 100 | | Minus |
3R | 31775374..31775502 | 780..907 | 96 | <- | Minus |
3R | 31775559..31775693 | 645..779 | 100 | <- | Minus |
3R | 31775748..31775920 | 472..644 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:08 Download gff for
BS11449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27601096..27601224 | 780..907 | 96 | <- | Minus |
arm_3R | 27601281..27601415 | 645..779 | 100 | <- | Minus |
arm_3R | 27601470..27601642 | 472..644 | 100 | <- | Minus |
arm_3R | 27601706..27601918 | 259..471 | 100 | <- | Minus |
arm_3R | 27601971..27602104 | 125..258 | 100 | <- | Minus |
arm_3R | 27602167..27602275 | 16..124 | 100 | | Minus |
BS11449.complete Sequence
947 bp assembled on 2006-11-01
GenBank Submission: FJ636870
> BS11449.complete
GAAGTTATCAGTCGACATGAGAATGTACGACGCGTTGGAACGCTGCCCAG
GAGCCTACTGTGGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGC
GGGGTCTGTCCCAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCC
ATGCCGCGACGAGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGA
CCATGCTGCCACTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAG
GATCGCAAGTTTTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGT
TGAGGTTGCCATATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGT
GGGAGCTGCGCCTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTAC
ACATTGTTTTACAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCAC
CCAGGAGGCAGTTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTC
TGTGCCTGGTGAACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATG
GATGTGGGGGGCAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCT
GCCCCTGCTCACCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACT
CCTTTCCGTACCTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCAC
TATTCCCTCAAACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGT
GTGGGAGTTAAAAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGG
CCTACGGCCTCACCTCCCTGAATTACCACTATGCCTTTATGTGCTTGGTG
CCCTTCCCCACACTGTTCTATATTTTGACCGTACGTTTCACGGATCCTGC
CGAGTTCCGGGAGCTGGAGTCGAGAATTTGAAAGCTTTCTAGACCAT
BS11449.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-RB | 987 | CG2126-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
CG2126-RA | 915 | CG2126-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-RB | 1317 | CG2126-RB | 100..1015 | 16..931 | 4580 | 100 | Plus |
CG2126-RA | 1317 | CG2126-RA | 100..1015 | 16..931 | 4580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31775983..31776196 | 472..259 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 31775748..31775920 | 644..472 | 865 | 100 | Minus |
3R | 32079331 | 3R | 31775351..31775504 | 931..778 | 770 | 100 | Minus |
3R | 32079331 | 3R | 31776247..31776383 | 260..124 | 685 | 100 | Minus |
3R | 32079331 | 3R | 31775559..31775693 | 779..645 | 675 | 100 | Minus |
3R | 32079331 | 3R | 31776443..31776553 | 126..16 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:12:08 has no hits.
BS11449.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:39 Download gff for
BS11449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:20 Download gff for
BS11449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 54..972 | 16..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:25 Download gff for
BS11449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 101..1014 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:41 Download gff for
BS11449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 54..972 | 16..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:45 Download gff for
BS11449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 101..1014 | 17..930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:45 Download gff for
BS11449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31775352..31775502 | 780..930 | 100 | <- | Minus |
3R | 31775559..31775693 | 645..779 | 100 | <- | Minus |
3R | 31775748..31775920 | 472..644 | 100 | <- | Minus |
3R | 31775984..31776196 | 259..471 | 100 | <- | Minus |
3R | 31776249..31776382 | 125..258 | 100 | <- | Minus |
3R | 31776445..31776552 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:25 Download gff for
BS11449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27601074..27601224 | 780..930 | 100 | <- | Minus |
arm_3R | 27601281..27601415 | 645..779 | 100 | <- | Minus |
arm_3R | 27601470..27601642 | 472..644 | 100 | <- | Minus |
arm_3R | 27601706..27601918 | 259..471 | 100 | <- | Minus |
arm_3R | 27601971..27602104 | 125..258 | 100 | <- | Minus |
arm_3R | 27602167..27602274 | 17..124 | 100 | | Minus |
BS11449.pep Sequence
Translation from 16 to 930
> BS11449.pep
MRMYDALERCPGAYCGRSPLGNNSWSSCGVCPRGSRVNQSYACSPCRDEL
STYSWLYLGFMTMLPLMMHCFFIDMDAKDRKFSRKQLILTASAFVEVAIS
AILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYEARVYCTQEAVY
PLQTIVLVFYFLCLVNMFLIRPLVSKIMDVGGRSKAPIYSALYFLPLLTF
IHALGCGLIYYSFPYLSVAISMVANAIHYSLKLDQTLKALVHSSVWELKN
VVIIAVHWMLLAYGLTSLNYHYAFMCLVPFPTLFYILTVRFTDPAEFREL
ESRI*
BS11449.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-PA | 304 | CG2126-PA | 1..304 | 1..304 | 1619 | 100 | Plus |
CG2126-PB | 328 | CG2126-PB | 1..304 | 1..304 | 1619 | 100 | Plus |