Clone BS11449 Report

Search the DGRC for BS11449

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG2126-RA
Protein status:BS11449.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11449.3prime Sequence

886 bp (823 high quality bases) assembled on 2006-05-08

> BS11449.3prime
ATGGTCTAGAAAGCTTTCAAATTCTCGACTCCAGCTCCCGGAACTCGGCA
GGATCCGTGAAACGTACGGTCAAAATATAGAACAGTGTGGGGAAGGGCAC
CAAGCACATAAAGGCATAGTGGTAATTCAGGGAGGTGAGGCCGTAGGCCA
ACAACATCCAGTGCACAGCTATGATGACCACGTTTTTTAACTCCCACACC
GACGAGTGAACCAATGCCTTTAGGGTTTGATCCAGTTTGAGGGAATAGTG
GATGGCATTGGCTACCATGGATATGGCCACGCTAAGGTACGGAAAGGAGT
AATAGATCAACCCACATCCTAACGCATGGATAAAGGTGAGCAGGGGCAGG
AAGTAAAGAGCCGAGTAAATCGGCGCCTTGCTTCTGCCCCCCACATCCAT
AATTTTGCTGACTAGCGGGCGTATGAGAAACATGTTCACCAGGCACAGAA
AGTAGAAAACCAGCACGATGGTTTGCAATGGGTAAACTGCCTCCTGGGTG
CAGTAGACTCGTGCCTCATAATTGGGGCTGGGGTTGTAAAACAATGTGTA
CCAGTCAGTAAGTTTTCGAACATCACAGGCGTAGAGGCGCAGCTCCCACA
TGGGCTCCATTAGCAAGGTGGCGAGGATGGCAGATATGGCAACCTCAACG
AAAGCGCTGGCCGTCAAGATCAGCTGCTTCCGCGAAAACTTGCGATCCTT
GGCGTCCATGTCAATGAAAAAGCAGTGCATCATAAGTGGCAGCATGGTCA
TGAATCCCAGGTATAGCCAGGAGTACGTGCTTAACTCGTCGCGGCATGGA
GAGCATGCGTAACTTTGGTTCACCCGAGATCCTCTGGGACAGACCCCGCA
GCTGCTCCCGCTGTTGTTTCCTAGCGGTGATCGCCC

BS11449.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-PA 915 CG2126-RA 46..915 886..17 4325 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-RB 1317 CG2126-RB 146..1015 886..17 4335 99.9 Minus
CG2126-RA 1317 CG2126-RA 146..1015 886..17 4335 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31775983..31776196 476..689 1070 100 Plus
3R 32079331 3R 31775748..31775920 304..476 865 100 Plus
3R 32079331 3R 31775351..31775504 17..170 770 100 Plus
3R 32079331 3R 31776247..31776383 688..824 685 100 Plus
3R 32079331 3R 31775559..31775693 169..303 675 100 Plus
3R 32079331 3R 31776443..31776507 822..886 310 98.5 Plus
Blast to na_te.dros performed on 2015-02-03 07:29:23 has no hits.

BS11449.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:31 Download gff for BS11449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-PA 46..915 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:10 Download gff for BS11449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-PA 46..915 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:17 Download gff for BS11449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 146..1018 13..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:31 Download gff for BS11449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 146..1018 13..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:31 Download gff for BS11449.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31775348..31775502 13..168 98 <- Plus
3R 31775559..31775693 169..303 100 <- Plus
3R 31775748..31775920 304..476 100 <- Plus
3R 31775984..31776196 477..689 100 <- Plus
3R 31776249..31776382 690..823 100 <- Plus
3R 31776445..31776507 824..886 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:17 Download gff for BS11449.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27601470..27601642 304..476 100 <- Plus
arm_3R 27601070..27601224 13..168 98 <- Plus
arm_3R 27601281..27601415 169..303 100 <- Plus
arm_3R 27601706..27601918 477..689 100 <- Plus
arm_3R 27601971..27602104 690..823 100 <- Plus
arm_3R 27602167..27602229 824..886 98   Plus

BS11449.5prime Sequence

907 bp (804 high quality bases) assembled on 2006-05-08

> BS11449.5prime
GAAGTTATCAGTCGACATGAGAATGTACGACGCGTTGGAACGCTGCCCAG
GAGCCTACTGTGGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGC
GGGGTCTGTCCCAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCC
ATGCCGCGACGAGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGA
CCATGCTGCCACTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAG
GATCGCAAGTTTTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGT
TGAGGTTGCCATATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGT
GGGAGCTGCGCCTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTAC
ACATTGTTTTACAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCAC
CCAGGAGGCAGTTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTC
TGTGCCTGGTGAACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATG
GATGTGGGGGGCAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCT
GCCCCTGCTCACCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACT
CCTTTCCGTACCTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCAC
TATTCCCTCAAACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGT
GTGGGAGTTAAAAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGG
CCTACGGCCTCACCTCCCTGAATTACACTATGCCTTTATGTGCTTGGTGC
CCTTCCCACACTGTTCTATATTTTGACCGTACGTTTCACGGGATCTGCCG
AGTTTCC

BS11449.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-PA 915 CG2126-RA 1..810 17..826 4050 100 Plus
CG2126-PA 915 CG2126-RA 841..877 855..891 185 100 Plus
CG2126-PA 915 CG2126-RA 811..842 826..857 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-RB 1317 CG2126-RB 100..990 16..904 4360 99.6 Plus
CG2126-RA 1317 CG2126-RA 100..990 16..904 4360 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31775983..31776196 472..259 1070 100 Minus
3R 32079331 3R 31775748..31775920 644..472 865 100 Minus
3R 32079331 3R 31776247..31776383 260..124 685 100 Minus
3R 32079331 3R 31775559..31775693 779..645 675 100 Minus
3R 32079331 3R 31776443..31776553 126..16 555 100 Minus
3R 32079331 3R 31775376..31775504 904..778 500 96.1 Minus
Blast to na_te.dros performed on 2015-02-13 02:25:25 has no hits.

BS11449.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:32 Download gff for BS11449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-PA 1..892 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:12 Download gff for BS11449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-PA 1..892 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:08 Download gff for BS11449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 100..992 16..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:02 Download gff for BS11449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 100..992 16..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:02 Download gff for BS11449.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31775984..31776196 259..471 100 <- Minus
3R 31776249..31776382 125..258 100 <- Minus
3R 31776445..31776553 16..124 100   Minus
3R 31775374..31775502 780..907 96 <- Minus
3R 31775559..31775693 645..779 100 <- Minus
3R 31775748..31775920 472..644 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:08 Download gff for BS11449.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27601096..27601224 780..907 96 <- Minus
arm_3R 27601281..27601415 645..779 100 <- Minus
arm_3R 27601470..27601642 472..644 100 <- Minus
arm_3R 27601706..27601918 259..471 100 <- Minus
arm_3R 27601971..27602104 125..258 100 <- Minus
arm_3R 27602167..27602275 16..124 100   Minus

BS11449.complete Sequence

947 bp assembled on 2006-11-01

GenBank Submission: FJ636870

> BS11449.complete
GAAGTTATCAGTCGACATGAGAATGTACGACGCGTTGGAACGCTGCCCAG
GAGCCTACTGTGGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGC
GGGGTCTGTCCCAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCC
ATGCCGCGACGAGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGA
CCATGCTGCCACTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAG
GATCGCAAGTTTTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGT
TGAGGTTGCCATATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGT
GGGAGCTGCGCCTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTAC
ACATTGTTTTACAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCAC
CCAGGAGGCAGTTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTC
TGTGCCTGGTGAACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATG
GATGTGGGGGGCAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCT
GCCCCTGCTCACCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACT
CCTTTCCGTACCTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCAC
TATTCCCTCAAACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGT
GTGGGAGTTAAAAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGG
CCTACGGCCTCACCTCCCTGAATTACCACTATGCCTTTATGTGCTTGGTG
CCCTTCCCCACACTGTTCTATATTTTGACCGTACGTTTCACGGATCCTGC
CGAGTTCCGGGAGCTGGAGTCGAGAATTTGAAAGCTTTCTAGACCAT

BS11449.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-RB 987 CG2126-PB 1..915 17..931 4575 100 Plus
CG2126-RA 915 CG2126-PA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-RB 1317 CG2126-RB 100..1015 16..931 4580 100 Plus
CG2126-RA 1317 CG2126-RA 100..1015 16..931 4580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31775983..31776196 472..259 1070 100 Minus
3R 32079331 3R 31775748..31775920 644..472 865 100 Minus
3R 32079331 3R 31775351..31775504 931..778 770 100 Minus
3R 32079331 3R 31776247..31776383 260..124 685 100 Minus
3R 32079331 3R 31775559..31775693 779..645 675 100 Minus
3R 32079331 3R 31776443..31776553 126..16 555 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:12:08 has no hits.

BS11449.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:39 Download gff for BS11449.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 1..915 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:20 Download gff for BS11449.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 54..972 16..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:25 Download gff for BS11449.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 101..1014 17..930 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:41 Download gff for BS11449.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 54..972 16..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:45 Download gff for BS11449.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 101..1014 17..930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:45 Download gff for BS11449.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31775352..31775502 780..930 100 <- Minus
3R 31775559..31775693 645..779 100 <- Minus
3R 31775748..31775920 472..644 100 <- Minus
3R 31775984..31776196 259..471 100 <- Minus
3R 31776249..31776382 125..258 100 <- Minus
3R 31776445..31776552 17..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:25 Download gff for BS11449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27601074..27601224 780..930 100 <- Minus
arm_3R 27601281..27601415 645..779 100 <- Minus
arm_3R 27601470..27601642 472..644 100 <- Minus
arm_3R 27601706..27601918 259..471 100 <- Minus
arm_3R 27601971..27602104 125..258 100 <- Minus
arm_3R 27602167..27602274 17..124 100   Minus

BS11449.pep Sequence

Translation from 16 to 930

> BS11449.pep
MRMYDALERCPGAYCGRSPLGNNSWSSCGVCPRGSRVNQSYACSPCRDEL
STYSWLYLGFMTMLPLMMHCFFIDMDAKDRKFSRKQLILTASAFVEVAIS
AILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYEARVYCTQEAVY
PLQTIVLVFYFLCLVNMFLIRPLVSKIMDVGGRSKAPIYSALYFLPLLTF
IHALGCGLIYYSFPYLSVAISMVANAIHYSLKLDQTLKALVHSSVWELKN
VVIIAVHWMLLAYGLTSLNYHYAFMCLVPFPTLFYILTVRFTDPAEFREL
ESRI*

BS11449.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-PA 304 CG2126-PA 1..304 1..304 1619 100 Plus
CG2126-PB 328 CG2126-PB 1..304 1..304 1619 100 Plus