Clone Sequence Records
BS11453.5prime Sequence
456 bp (455 high quality bases) assembled on 2006-05-08
> BS11453.5prime
GAAGTTATCAGTCGACATGGCCAAGTATATCGCCCAGATCATCGTGTTGG
GCGCCCAGGCAGTGGGAAGAGCCTTTACCAAGGCGCTGCGCCAGGAGATC
GCCGCATCTCAGGAAGCAGCACGACGGGCGGGTGGTGGCAAGCAGGGCGA
CAAGAGCGCCGAGTCCAACCTGCGCACAGGCATGACGCTGGAGGAAGCCA
AGCAGATCCTGAATATAGATGACCCCAAAAACGTGGACGCTATCACCAAG
AACTACGAGCATCTGTTTCAAGTCAACGAACGCTCCAAAGGCGGCTCCTT
CTATATCCAGTCAAAGGTTTTCCGGGCGAAAGAGCGGCTGGACCATGAGA
TTAAGGCCCATGAGCAGCCGAGGTCGTCAAATACGGAAGCAGCGCAAGAT
ACGGCGGAGGAGTCTCAGAGCAGATCGCGGCAGCGACGCTGAAAGCTTTC
TAGACC
BS11453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5268-PA | 426 | blp-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:12:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-RB | 964 | CG5268-RB | 235..661 | 16..442 | 2135 | 100 | Plus |
blp-RA | 955 | CG5268-RA | 226..652 | 16..442 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15934372..15934637 | 177..442 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 15934151..15934315 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:12:46 has no hits.
BS11453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:41 Download gff for
BS11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-PA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:25 Download gff for
BS11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5268-PA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:51:29 Download gff for
BS11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 235..669 | 13..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:34 Download gff for
BS11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 223..657 | 13..450 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:34 Download gff for
BS11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15934148..15934314 | 13..179 | 99 | -> | Plus |
3R | 15934375..15934642 | 180..450 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:51:29 Download gff for
BS11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11759870..11760036 | 13..179 | 99 | -> | Plus |
arm_3R | 11760097..11760364 | 180..450 | 98 | | Plus |
BS11453.3prime Sequence
456 bp (455 high quality bases) assembled on 2006-05-08
> BS11453.3prime
ATGGTCTAGAAAGCTTTCAGCGTCGCTGCCGCGATCTGCTCTGAGACTCC
TCCGCCGTATCTTGCGCTGCTTCCGTATTTGACGACCTCGGCTGCTCATG
GGCCTTAATCTCATGGTCCAGCCGCTCTTTCGCCCGGAAAACCTTTGACT
GGATATAGAAGGAGCCGCCTTTGGAGCGTTCGTTGACTTGAAACAGATGC
TCGTAGTTCTTGGTGATAGCGTCCACGTTTTTGGGGTCATCTATATTCAG
GATCTGCTTGGCTTCCTCCAGCGTCATGCCTGTGCGCAGGTTGGACTCGG
CGCTCTTGTCGCCCTGCTTGCCACCACCCGCCCGTCGTGCTGCTTCCTGA
GATGCGGCGATCTCCTGGCGCAGCGCCTTGGTAAAGGCTCTTCCCACTGC
CTGGGCGCCCAACACGATGATCTGGGCGATATACTTGGCCATGTCGACTG
ATAACT
BS11453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5268-PA | 426 | blp-RA | 1..426 | 442..17 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-RB | 964 | CG5268-RB | 235..661 | 443..17 | 2135 | 100 | Minus |
blp-RA | 955 | CG5268-RA | 226..652 | 443..17 | 2135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15934372..15934637 | 282..17 | 1330 | 100 | Minus |
3R | 32079331 | 3R | 15934151..15934315 | 443..279 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:41:41 has no hits.
BS11453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:40 Download gff for
BS11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-PA | 1..426 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:23 Download gff for
BS11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5268-PA | 1..426 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:33:15 Download gff for
BS11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 235..669 | 9..446 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:58 Download gff for
BS11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 223..657 | 9..446 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:58 Download gff for
BS11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15934375..15934642 | 9..279 | 98 | | Minus |
3R | 15934148..15934314 | 280..446 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:33:15 Download gff for
BS11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11759870..11760036 | 280..446 | 99 | -> | Minus |
arm_3R | 11760097..11760364 | 9..279 | 98 | | Minus |
BS11453.complete Sequence
458 bp assembled on 2006-11-01
GenBank Submission: FJ636872
> BS11453.complete
GAAGTTATCAGTCGACATGGCCAAGTATATCGCCCAGATCATCGTGTTGG
GCGCCCAGGCAGTGGGAAGAGCCTTTACCAAGGCGCTGCGCCAGGAGATC
GCCGCATCTCAGGAAGCAGCACGACGGGCGGGTGGTGGCAAGCAGGGCGA
CAAGAGCGCCGAGTCCAACCTGCGCACAGGCATGACGCTGGAGGAAGCCA
AGCAGATCCTGAATATAGATGACCCCAAAAACGTGGACGCTATCACCAAG
AACTACGAGCATCTGTTTCAAGTCAACGAACGCTCCAAAGGCGGCTCCTT
CTATATCCAGTCAAAGGTTTTCCGGGCGAAAGAGCGGCTGGACCATGAGA
TTAAGGCCCATGAGCAGCCGAGGTCGTCAAATACGGAAGCAGCGCAAGAT
ACGGCGGAGGAGTCTCAGAGCAGATCGCGGCAGCGACGCTGAAAGCTTTC
TAGACCAT
BS11453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-RB | 426 | CG5268-PB | 1..426 | 17..442 | 2130 | 100 | Plus |
blp-RA | 426 | CG5268-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-RB | 964 | CG5268-RB | 235..661 | 16..442 | 2135 | 100 | Plus |
blp-RA | 955 | CG5268-RA | 226..652 | 16..442 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15934372..15934637 | 177..442 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 15934151..15934315 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:32:45 has no hits.
BS11453.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:43 Download gff for
BS11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:49 Download gff for
BS11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 218..652 | 13..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:18 Download gff for
BS11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 239..663 | 17..441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:43 Download gff for
BS11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 218..652 | 13..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:29 Download gff for
BS11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 227..651 | 17..441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:29 Download gff for
BS11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15934152..15934314 | 17..179 | 100 | -> | Plus |
3R | 15934375..15934636 | 180..441 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:18 Download gff for
BS11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11759874..11760036 | 17..179 | 100 | -> | Plus |
arm_3R | 11760097..11760358 | 180..441 | 100 | | Plus |
BS11453.pep Sequence
Translation from 16 to 441
> BS11453.pep
MAKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAES
NLRTGMTLEEAKQILNIDDPKNVDAITKNYEHLFQVNERSKGGSFYIQSK
VFRAKERLDHEIKAHEQPRSSNTEAAQDTAEESQSRSRQRR*
BS11453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-PB | 141 | CG5268-PB | 1..141 | 1..141 | 698 | 100 | Plus |
blp-PA | 141 | CG5268-PA | 1..141 | 1..141 | 698 | 100 | Plus |
CG1409-PB | 150 | CG1409-PB | 1..117 | 1..116 | 305 | 55.6 | Plus |