Clone BS11455 Report

Search the DGRC for BS11455

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG12360-RA
Protein status:BS11455.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11455.3prime Sequence

875 bp (831 high quality bases) assembled on 2006-05-08

> BS11455.3prime
ATGGTCTAGAAAGCTTCTAAAATAAGCGGGTCAGGCGGGGCCGGAAGAAA
CGAAAGGCACCGTAGCATCCGAGGCCAATTAGGCCGTACTTCAGGGTGTA
CTTGCAGACGCGTTGTCCCAGGCTGGCCGGCGGTATTTCGAGAATGGCCG
GAATCTTCTTCGGATCGACGGTGCCCCACATCTTGGCAATTCCGTTGGCG
TGTCCGATGCCCACCACTCCGACCACACGTACCGGACGGACCTGTTGGCC
ACCTGGAGCCGCCTGAGGCAGCGCAGCCAGTTGCAGAGAGTGGCATAGGA
AAACGTCGCGCTCGCGCACAAACACATCCGAAAAGGCAGGAAACTCGCCG
GCCATCTCCTGCATCAGCTTCTCTAACAGATCGCTCTGCTTGCACTCCTC
TACCTCCTCAATGCTGATGCTGTCCGTGAAGGTAAGACGCCACACCAGTT
TCATGGTCTGCCACATGGACAAAGCGCGCAGAGCGCGGTAAAGTGTGATG
CGGATTGGGCGATCGCCTAGATGTAAGATGCAACCGGGCAGCTTGTGAAT
CTCCTCGAAGGCACGGCGAAATTCGCCACCGGGCGCCATGCCCAGGTCCT
TGGCGATCTGAGCGCTCATCTGCAGCAGTAGGATGAAAAAGATGCCATTG
ATGTAGCCGTGCGTGTGCAGGATTCCTCGAATCTTGGGAATATTGATGCT
TTTGGCTTCCTCCAGCAGGGTCTTTTCATCGAGCTTAAGGATGTGTATGC
GCGATGGACACAACTCCACCATTACCACATCTGGACGGACATTGCGAATG
ACATAAGAGACGTCATCCTGCGACTCCTCGCTGAAGTGGGCCGTGCCCAC
AAGATATACCTTGCTGCCGAAGGGC

BS11455.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-PA 1599 CG12360-RA 741..1599 875..17 4295 100 Minus
CG12360-PB 1599 CG12360-RB 741..1599 875..17 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-RB 2795 CG12360-RB 919..1778 875..16 4300 100 Minus
CG12360-RA 2158 CG12360-RA 1090..1949 875..16 4300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13027300..13027968 16..684 3345 100 Plus
3R 32079331 3R 13028027..13028146 683..802 600 100 Plus
3R 32079331 3R 13028203..13028277 801..875 375 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:29:13 has no hits.

BS11455.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:42 Download gff for BS11455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12360-PB 741..1599 17..875 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:26 Download gff for BS11455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12360-PB 741..1599 17..875 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:15 Download gff for BS11455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 1090..1949 16..875 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:29 Download gff for BS11455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 1090..1949 16..875 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:29 Download gff for BS11455.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13027300..13027966 16..682 100 <- Plus
3R 13028027..13028146 683..802 100 <- Plus
3R 13028205..13028277 803..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:15 Download gff for BS11455.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8853927..8853999 803..875 100   Plus
arm_3R 8853022..8853688 16..682 100 <- Plus
arm_3R 8853749..8853868 683..802 100 <- Plus

BS11455.5prime Sequence

938 bp (809 high quality bases) assembled on 2006-05-08

> BS11455.5prime
GAAGTTATCAGTCGACATGGACGTATCCGCCTCCACGTCGTTTGAATCCT
CGCCGGACAAGAGAAACAGCATCTATGTGGGCGACAACACTTTCTACGAC
AGCGCCCTGGATCACCAGCTGTCCACCACGGCCTACAAGTCGTGCAATGA
GAGCCTTATCAGCGAACTCAGCCAGAATCCTCTTGGCCCCTCGAACTCGG
CCAACAAGACAGCTAGTGCGGAATTTGGCAATGAATCCGCTGCATTCAAG
CCCCTCGGATCCCCGGCAGCTTTCAACAATGCCACGCCAGCGCTAAATGC
CAGCATGCTGCTGATTCAGTCGGAGAGCACGGACACTAATACCTCGCAGG
AGGAGGTGGACCCCAAGTCACAACTGGCCAACAAGACAATATTCAAGACG
GATAATCCCAACCTGTCAATTATAGAAATTAACGATAACTCGATTAAGGA
GGAGGACCTCGAGAAGGTGGTGCTGGTCGAGGGCGACAGTGTGAAGAATC
TTTTGAAGAAGTCGCCCAGCAAGGAGGCTTCGGCAAACGCTGACAAAAGA
CGCCGCAAGGAATCCCTACTGCACACGAGCAAACAAAAATTGGACATTTC
CATCGCTGAAGCTTCGGCAGCCGCCGATGGTGATGGCGAGAAGCGGGATC
TGGTGTCGGTCATAGATCAGCCGCAGACCAAGCGCGAAATCACAATTTAC
GATACCATTGAGGAGTTCGAACAGAATCTGCCGTCGACGGTGACGCTGTT
GAACACGCCCTTCGGCAGCAAGGTATATCTTGTGGGCACGGCCCACTTCA
GCGAGGAGTCGCAGGATGACGTCTCTTATGTCATTCGCAATGTCCGTCCA
GATGTGGTAATGGGTGGAGTTGTGTCCATCGCGCATACACATCCTTAAGC
TCGATGAAAAGACCCTGCTGGAGGAAGCCAAAAGCATC

BS11455.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-PA 1599 CG12360-RA 1..847 17..863 4235 100 Plus
CG12360-PB 1599 CG12360-RB 1..847 17..863 4235 100 Plus
CG12360-PA 1599 CG12360-RA 846..921 863..938 380 100 Plus
CG12360-PB 1599 CG12360-RB 846..921 863..938 380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-RB 2795 CG12360-RB 178..1099 16..938 4590 99.9 Plus
CG12360-RA 2158 CG12360-RA 349..1270 16..938 4590 99.9 Plus
CG12360-RC 1309 CG12360-RC 178..311 16..149 670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13028203..13028885 831..149 3415 100 Minus
3R 32079331 3R 13029919..13030052 149..16 670 100 Minus
3R 32079331 3R 13028039..13028146 938..830 495 99.1 Minus
Blast to na_te.dros performed on 2015-02-13 08:29:48 has no hits.

BS11455.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:43 Download gff for BS11455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12360-PB 1..921 17..938 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:27 Download gff for BS11455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12360-PB 1..921 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:53 Download gff for BS11455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 343..1270 9..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:14:10 Download gff for BS11455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 343..1270 9..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:14:10 Download gff for BS11455.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13028039..13028146 830..938 99 <- Minus
3R 13028205..13028884 150..829 100 <- Minus
3R 13029919..13030058 9..149 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:53 Download gff for BS11455.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8853761..8853868 830..938 99 <- Minus
arm_3R 8853927..8854606 150..829 100 <- Minus
arm_3R 8855641..8855780 9..149 97   Minus

BS11455.complete Sequence

1631 bp assembled on 2006-11-01

GenBank Submission: FJ636873

> BS11455.complete
GAAGTTATCAGTCGACATGGACGTATCCGCCTCCACGTCGTTTGAATCCT
CGCCGGACAAGAGAAACAGCATCTATGTGGGCGACAACACTTTCTACGAC
AGCGCCCTGGATCACCAGCTGTCCACCACGGCCTACAAGTCGTGCAATGA
GAGCCTTATCAGCGAACTCAGCCAGAATCCTCTTGGCCCCTCGAACTCGG
CCAACAAGACAGCTAGTGCGGAATTTGGCAATGAATCCGCTGCATTCAAG
CCCCTCGGATCCCCGGCAGCTTTCAACAATGCCACGCCAGCGCTAAATGC
CAGCATGCTGCTGATTCAGTCGGAGAGCACGGACACTAATACCTCGCAGG
AGGAGGTGGACCCCAAGTCACAACTGGCCAACAAGACAATATTCAAGACG
GATAATCCCAACCTGTCAATTATAGAAATTAACGATAACTCGATTAAGGA
GGAGGACCTCGAGAAGGTGGTGCTGGTCGAGGGCGACAGTGTGAAGAATC
TTTTGAAGAAGTCGCCCAGCAAGGAGGCTTCGGCAAACGCTGACAAAAGA
CGCCGCAAGGAATCCCTACTGCACACGAGCAAACAAAAATTGGACATTTC
CATCGCTGAAGCTTCGGCAGCCGCCGATGGTGATGGCGAGAAGCGGGATC
TGGTGTCGGTCATAGATCAGCCGCAGACCAAGCGCGAAATCACAATTTAC
GATACCATTGAGGAGTTCGAACAGAATCTGCCGTCGACGGTGACGCTGTT
GAACACGCCCTTCGGCAGCAAGGTATATCTTGTGGGCACGGCCCACTTCA
GCGAGGAGTCGCAGGATGACGTCTCTTATGTCATTCGCAATGTCCGTCCA
GATGTGGTAATGGTGGAGTTGTGTCCATCGCGCATACACATCCTTAAGCT
CGATGAAAAGACCCTGCTGGAGGAAGCCAAAAGCATCAATATTCCCAAGA
TTCGAGGAATCCTGCACACGCACGGCTACATCAATGGCATCTTTTTCATC
CTACTGCTGCAGATGAGCGCTCAGATCGCCAAGGACCTGGGCATGGCGCC
CGGTGGCGAATTTCGCCGTGCCTTCGAGGAGATTCACAAGCTGCCCGGTT
GCATCTTACATCTAGGCGATCGCCCAATCCGCATCACACTTTACCGCGCT
CTGCGCGCTTTGTCCATGTGGCAGACCATGAAACTGGTGTGGCGTCTTAC
CTTCACGGACAGCATCAGCATTGAGGAGGTAGAGGAGTGCAAGCAGAGCG
ATCTGTTAGAGAAGCTGATGCAGGAGATGGCCGGCGAGTTTCCTGCCTTT
TCGGATGTGTTTGTGCGCGAGCGCGACGTTTTCCTATGCCACTCTCTGCA
ACTGGCTGCGCTGCCTCAGGCGGCTCCAGGTGGCCAACAGGTCCGTCCGG
TACGTGTGGTCGGAGTGGTGGGCATCGGACACGCCAACGGAATTGCCAAG
ATGTGGGGCACCGTCGATCCGAAGAAGATTCCGGCCATTCTCGAAATACC
GCCGGCCAGCCTGGGACAACGCGTCTGCAAGTACACCCTGAAGTACGGCC
TAATTGGCCTCGGATGCTACGGTGCCTTTCGTTTCTTCCGGCCCCGCCTG
ACCCGCTTATTTTAGAAGCTTTCTAGACCAT

BS11455.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-RB 1599 CG12360-PB 1..1599 17..1615 7995 100 Plus
CG12360-RA 1599 CG12360-PA 1..1599 17..1615 7995 100 Plus
CG12360-RC 1002 CG12360-PC 1..133 17..149 665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-RB 2795 CG12360-RB 178..1778 16..1616 8005 100 Plus
CG12360-RA 2158 CG12360-RA 349..1949 16..1616 8005 100 Plus
CG12360-RC 1309 CG12360-RC 178..311 16..149 670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13028203..13028885 831..149 3415 100 Minus
3R 32079331 3R 13027300..13027968 1616..948 3345 100 Minus
3R 32079331 3R 13029919..13030052 149..16 670 100 Minus
3R 32079331 3R 13028027..13028146 949..830 600 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:03:38 has no hits.

BS11455.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:46 Download gff for BS11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RB 1..1599 17..1615 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:52 Download gff for BS11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RB 172..1778 9..1616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:17 Download gff for BS11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 350..1948 17..1615 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:46 Download gff for BS11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RB 172..1778 9..1616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:47 Download gff for BS11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 350..1948 17..1615 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:47 Download gff for BS11455.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13027301..13027966 950..1615 100 <- Minus
3R 13028027..13028146 830..949 100 <- Minus
3R 13028205..13028884 150..829 100 <- Minus
3R 13029919..13030051 17..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:17 Download gff for BS11455.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8853023..8853688 950..1615 100 <- Minus
arm_3R 8853749..8853868 830..949 100 <- Minus
arm_3R 8853927..8854606 150..829 100 <- Minus
arm_3R 8855641..8855773 17..149 100   Minus

BS11455.pep Sequence

Translation from 16 to 1614

> BS11455.pep
MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNESLISE
LSQNPLGPSNSANKTASAEFGNESAAFKPLGSPAAFNNATPALNASMLLI
QSESTDTNTSQEEVDPKSQLANKTIFKTDNPNLSIIEINDNSIKEEDLEK
VVLVEGDSVKNLLKKSPSKEASANADKRRRKESLLHTSKQKLDISIAEAS
AAADGDGEKRDLVSVIDQPQTKREITIYDTIEEFEQNLPSTVTLLNTPFG
SKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHILKLDEKTL
LEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFR
RAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSI
SIEEVEECKQSDLLEKLMQEMAGEFPAFSDVFVRERDVFLCHSLQLAALP
QAAPGGQQVRPVRVVGVVGIGHANGIAKMWGTVDPKKIPAILEIPPASLG
QRVCKYTLKYGLIGLGCYGAFRFFRPRLTRLF*

BS11455.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-PB 532 CG12360-PB 1..532 1..532 2705 100 Plus
CG12360-PA 532 CG12360-PA 1..532 1..532 2705 100 Plus
CG12360-PC 333 CG12360-PC 1..44 1..44 229 100 Plus