Clone Sequence Records
BS11456.3prime Sequence
777 bp (732 high quality bases) assembled on 2006-05-08
> BS11456.3prime
ATGGTCTAGAAAGCTTTTAGTCCCACTCCCCTTCGTTGTCCGAGGACTCG
GTTTCGTCCTCATCCGAGTGGATGGCGTTTCCACGCGCCGCCAGCGCTCG
ACGCAGTGCATCGGCCAATGCGTCAGTGCCTGCTCCACTGTCGCTGTTTC
GCTGACTGCCCAGCTCCCGTTCCTTGGCCGGCTTCAAAACAGTGCCCTGA
CGGATATCCTTCATTAAATCGCTGCGTGAGTCGCCACTTCCAGTGCTGAG
AGCAGTCGTGTCCACTTTCTTCAGCTGGGTTCCCTTGCGTATGGCGTCCA
TCAGTGCATTGCGTGGATCTGGAGCCGCCGGAGCTGCTGGCCGGGCTGCT
TGAGTCGGTGCGTGCGTGGTCGTAATGACGGGGATCTCTCCCACTGGCAT
GGGCGGGGGCGGTGGTGGCGGCACCGCTGCTGGTGGTGGCGGTGGTGGAG
GTGGCGGCGCCACAACAGGCGCACTGACTGGTGGCGGTGGTGGAGCGGTG
CTAATGGGTGGTGGTCTGTTAGGTGGTGGAGGAGCTCGTGCGGCGCCCGG
CACAGTAACGGGAACTGCGGGCGGTGGTTGTCTTGCCGGCGGCAGCGGAG
GAGCAGTTCTTTGGTTGCCATTAGATGGATGACGGGTTGGCACCGGTGGT
GGCATGGGAGCCGCTGTTTCCGTAGGGGATTCTACACTGTATTGCTTCAC
CGAAGCCAGGACATTGTTGCTCTGTATGAAGTCGTAGATGAAGGCGCGGG
TGTCCCGATCTTTTAGCTCCACTTCCG
BS11456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1520-PA | 1584 | WASp-RA | 824..1584 | 777..17 | 3805 | 100 | Minus |
CG1520-PB | 1584 | WASp-RB | 824..1584 | 777..17 | 3805 | 100 | Minus |
CG1520-PC | 1485 | WASp-RC | 725..1485 | 777..17 | 3805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-RD | 2734 | CG1520-RD | 1030..1790 | 777..17 | 3805 | 100 | Minus |
WASp-RC | 2500 | CG1520-RC | 796..1556 | 777..17 | 3805 | 100 | Minus |
WASp-RB | 2682 | CG1520-RB | 978..1738 | 777..17 | 3805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28825450..28825703 | 17..270 | 1270 | 100 | Plus |
3R | 32079331 | 3R | 28825765..28825954 | 269..458 | 950 | 100 | Plus |
3R | 32079331 | 3R | 28826010..28826174 | 458..622 | 825 | 100 | Plus |
3R | 32079331 | 3R | 28826242..28826396 | 623..777 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:36:02 has no hits.
BS11456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:44 Download gff for
BS11456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-PA | 824..1584 | 17..777 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:29 Download gff for
BS11456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1520-PC | 725..1485 | 17..777 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:25 Download gff for
BS11456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 978..1738 | 17..777 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:47 Download gff for
BS11456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 978..1738 | 17..777 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:47 Download gff for
BS11456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28825450..28825701 | 17..268 | 100 | <- | Plus |
3R | 28825765..28825953 | 269..457 | 100 | <- | Plus |
3R | 28826010..28826174 | 458..622 | 100 | <- | Plus |
3R | 28826242..28826396 | 623..777 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:25 Download gff for
BS11456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24651172..24651423 | 17..268 | 100 | <- | Plus |
arm_3R | 24651487..24651675 | 269..457 | 100 | <- | Plus |
arm_3R | 24651732..24651896 | 458..622 | 100 | <- | Plus |
arm_3R | 24651964..24652118 | 623..777 | 100 | | Plus |
BS11456.5prime Sequence
884 bp (705 high quality bases) assembled on 2006-05-08
> BS11456.5prime
GAAGTTATCAGTCGACATGAGCAGCGGAATGAGGTCGCAGGACGGTCCAC
GGGCGAAGGTCAATGCCGCCAGTACGCTGCTCACCCAGGAGGAGAATGAG
GCCGTCTTCAAGCTGCTGGGCAAGAAGTGCCAGACACTCAACACCGCCGT
GGTGCAGATCTACAAGACGGAGGGCAGCGCCCATGCCCACTGGAAGAAGC
GACACACCGGGGTGGTGTGCTTCGTCAAGGATAGCGCCATCCGATCCTAT
TTCATGCGCGCCTACTGCCTGATCAAGAACGAGCTAATCTGGGAGCACGA
GATCTACGATGGCATGGAGGTGGTCAAGTCGCGACCCTTTCTGCTTACCT
TCGAGGGCAGTGATGGTCATGTGGGACTAAACTTCGTGTCCGAGGAGGAG
TGCGACTCCTTCTTCCGCATTGTGGACGCCACCATAGAGACGCGTAACCG
CAAACGACAAGAGAAACGCAACCGGCAGAAAAGCCAACAGGCGCCCAATG
CTCCATTGCCTCAGGTGCAGCGGGAGCCGGCCAGGCCACCACCCATGCAA
GGTGGGTTGTCCTCCACGGACGGCGTTCAGCTGAGGAACAACAAGATCAA
CTCGGTGACACTGACGCCTGCACCAGCGCCAGCGCAGTCGAAGAATTTCC
TATCCAGTAGCTTTGGTCTGGGCAACAATGCGAAGGACAAGAAGCGCAAG
GTGACCAAGGCGGACATCAGCCGGCCGACAAACTTTGTACACCTCAGCCA
CGTGGGCTGGGATGCGCAGAAGGGATTTGATCTGGCGGGCAACGAGAACG
ACGAAGTGCTGAACGAGTTCTTCGTGAAGGCAGGTGTCTCGGAAGTGGAG
CTAAAAGATCGGGACACCCGCGCCTTCATCTACG
BS11456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1520-PA | 1584 | WASp-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
CG1520-PB | 1584 | WASp-RB | 1..868 | 17..884 | 4340 | 100 | Plus |
CG1520-PC | 1485 | WASp-RC | 17..769 | 132..884 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-RD | 2734 | CG1520-RD | 207..1074 | 17..884 | 4340 | 100 | Plus |
WASp-RB | 2682 | CG1520-RB | 155..1022 | 17..884 | 4340 | 100 | Plus |
WASp-RA | 2794 | CG1520-RA | 267..1134 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28826352..28826874 | 884..362 | 2615 | 100 | Minus |
3R | 32079331 | 3R | 28826946..28827177 | 362..131 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 28830502..28830618 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 08:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7852..7919 | 577..643 | 130 | 67.6 | Plus |
BS11456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:45 Download gff for
BS11456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:30 Download gff for
BS11456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1520-PB | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:51 Download gff for
BS11456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RA | 267..1134 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:51 Download gff for
BS11456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RA | 267..1134 | 17..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:51 Download gff for
BS11456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28826947..28827174 | 134..361 | 100 | <- | Minus |
3R | 28830502..28830618 | 17..133 | 100 | | Minus |
3R | 28826352..28826874 | 362..884 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:51 Download gff for
BS11456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24652074..24652596 | 362..884 | 100 | <- | Minus |
arm_3R | 24652669..24652896 | 134..361 | 100 | <- | Minus |
arm_3R | 24656224..24656340 | 17..133 | 100 | | Minus |
BS11456.complete Sequence
1616 bp assembled on 2007-10-26
GenBank Submission: FJ636874
> BS11456.complete
GAAGTTATCAGTCGACATGAGCAGCGGAATGAGGTCGCAGGACGGTCCAC
GGGCGAAGGTCAATGCCGCCAGTACGCTGCTCACCCAGGAGGAGAATGAG
GCCGTCTTCAAGCTGCTGGGCAAGAAGTGCCAGACACTCAACACCGCCGT
GGTGCAGATCTACAAGACGGAGGGCAGCGCCCATGCCCACTGGAAGAAGC
GACACACCGGGGTGGTGTGCTTCGTCAAGGATAGCGCCATCCGATCCTAT
TTCATGCGCGCCTACTGCCTGATCAAGAACGAGCTAATCTGGGAGCACGA
GATCTACGATGGCATGGAGGTGGTCAAGTCGCGACCCTTTCTGCTTACCT
TCGAGGGCAGTGATGGTCATGTGGGACTAAACTTCGTGTCCGAGGAGGAG
TGCGACTCCTTCTTCCGCATTGTGGACGCCACCATAGAGACGCGTAACCG
CAAACGACAAGAGAAACGCAACCGGCAGAAAAGCCAACAGGCGCCCAATG
CTCCATTGCCTCAGGTGCAGCGGGAGCCGGCCAGGCCACCACCCATGCAA
GGTGGGTTGTCCTCCACGGACGGCGTTCAGCTGAGGAACAACAAGATCAA
CTCGGTGACACTGACGCCTGCACCAGCGCCAGCGCAGTCGAAGAATTTCC
TATCCAGTAGCTTTGGTCTGGGCAACAATGCGAAGGACAAGAAGCGCAAG
GTGACCAAGGCGGACATCAGCCGGCCGACAAACTTTGTACACCTCAGCCA
CGTGGGCTGGGATGCGCAGAAGGGATTTGATCTGGCGGGCAACGAGAACG
ACGAAGTGCTGAACGAGTTCTTCGTGAAGGCAGGTGTCTCGGAAGTGGAG
CTAAAAGATCGGGACACCCGCGCCTTCATCTACGACTTCATACAGAGCAA
CAATGTCCTGGCTTCGGTGAAGCAATACAGTGTAGAATCCCCTACGGAAA
CAGCGGCTCCCATGCCACCACCGGTGCCAACCCGTCATCCATCTAATGGC
AACCAAAGAACTGCTCCTCCGCTGCCGCCGGCAAGACAACCACCGCCCGC
AGTTCCCGTTACTGTGCCGGGCGCCGCACGAGCTCCTCCACCACCTAACA
GACCACCACCCATTAGCACCGCTCCACCACCGCCACCAGTCAGTGCGCCT
GTTGTGGCGCCGCCACCTCCACCACCGCCACCACCAGCAGCGGTGCCGCC
ACCACCGCCCCCGCCCATGCCAGTGGGAGAGATCCCCGTCATTACGACCA
CGCACGCACCGACTCAAGCAGCCCGGCCAGCAGCTCCGGCGGCTCCAGAT
CCACGCAATGCACTGATGGACGCCATACGCAAGGGAACCCAGCTGAAGAA
AGTGGACACGACTGCTCTCAGCACTGGAAGTGGCGACTCACGCAGCGATT
TAATGAAGGATATCCGTCAGGGCACTGTTTTGAAGCCGGCCAAGGAACGG
GAGCTGGGCAGTCAGCGAAACAGCGACAGTGGAGCAGGCACTGACGCATT
GGCCGATGCACTGCGTCGAGCGCTGGCGGCGCGTGGAAACGCCATCCACT
CGGATGAGGACGAAACCGAGTCCTCGGACAACGAAGGGGAGTGGGACTAA
AAGCTTTCTAGACCAT
BS11456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-RD | 1584 | CG1520-PD | 1..1584 | 17..1600 | 7920 | 100 | Plus |
WASp-RB | 1584 | CG1520-PB | 1..1584 | 17..1600 | 7920 | 100 | Plus |
WASp-RA | 1584 | CG1520-PA | 1..1584 | 17..1600 | 7920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-RD | 2734 | CG1520-RD | 207..1790 | 17..1600 | 7920 | 100 | Plus |
WASp-RB | 2682 | CG1520-RB | 155..1738 | 17..1600 | 7920 | 100 | Plus |
WASp-RA | 2794 | CG1520-RA | 267..1850 | 17..1600 | 7920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28826242..28826874 | 994..362 | 3165 | 100 | Minus |
3R | 32079331 | 3R | 28825450..28825703 | 1600..1347 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 28826946..28827177 | 362..131 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 28825765..28825954 | 1348..1159 | 950 | 100 | Minus |
3R | 32079331 | 3R | 28826010..28826174 | 1159..995 | 825 | 100 | Minus |
3R | 32079331 | 3R | 28830502..28830618 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7852..7919 | 577..643 | 130 | 67.6 | Plus |
BS11456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:06 Download gff for
BS11456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 1..1584 | 17..1600 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:55 Download gff for
BS11456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 155..1738 | 17..1600 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:09 Download gff for
BS11456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RA | 267..1848 | 17..1598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:34 Download gff for
BS11456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 155..1736 | 17..1598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:59 Download gff for
BS11456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RA | 267..1848 | 17..1598 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:59 Download gff for
BS11456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28825452..28825701 | 1349..1598 | 100 | <- | Minus |
3R | 28825765..28825953 | 1160..1348 | 100 | <- | Minus |
3R | 28826010..28826174 | 995..1159 | 100 | <- | Minus |
3R | 28826242..28826874 | 362..994 | 100 | <- | Minus |
3R | 28826947..28827174 | 134..361 | 100 | <- | Minus |
3R | 28830502..28830618 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:09 Download gff for
BS11456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24651174..24651423 | 1349..1598 | 100 | <- | Minus |
arm_3R | 24651487..24651675 | 1160..1348 | 100 | <- | Minus |
arm_3R | 24651732..24651896 | 995..1159 | 100 | <- | Minus |
arm_3R | 24651964..24652596 | 362..994 | 100 | <- | Minus |
arm_3R | 24652669..24652896 | 134..361 | 100 | <- | Minus |
arm_3R | 24656224..24656340 | 17..133 | 100 | | Minus |
BS11456.pep Sequence
Translation from 16 to 1599
> BS11456.pep
MSSGMRSQDGPRAKVNAASTLLTQEENEAVFKLLGKKCQTLNTAVVQIYK
TEGSAHAHWKKRHTGVVCFVKDSAIRSYFMRAYCLIKNELIWEHEIYDGM
EVVKSRPFLLTFEGSDGHVGLNFVSEEECDSFFRIVDATIETRNRKRQEK
RNRQKSQQAPNAPLPQVQREPARPPPMQGGLSSTDGVQLRNNKINSVTLT
PAPAPAQSKNFLSSSFGLGNNAKDKKRKVTKADISRPTNFVHLSHVGWDA
QKGFDLAGNENDEVLNEFFVKAGVSEVELKDRDTRAFIYDFIQSNNVLAS
VKQYSVESPTETAAPMPPPVPTRHPSNGNQRTAPPLPPARQPPPAVPVTV
PGAARAPPPPNRPPPISTAPPPPPVSAPVVAPPPPPPPPPAAVPPPPPPP
MPVGEIPVITTTHAPTQAARPAAPAAPDPRNALMDAIRKGTQLKKVDTTA
LSTGSGDSRSDLMKDIRQGTVLKPAKERELGSQRNSDSGAGTDALADALR
RALAARGNAIHSDEDETESSDNEGEWD*
BS11456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-PD | 527 | CG1520-PD | 1..527 | 1..527 | 2771 | 100 | Plus |
WASp-PB | 527 | CG1520-PB | 1..527 | 1..527 | 2771 | 100 | Plus |
WASp-PA | 527 | CG1520-PA | 1..527 | 1..527 | 2771 | 100 | Plus |
WASp-PC | 494 | CG1520-PC | 3..494 | 36..527 | 2584 | 99.4 | Plus |
CG5514-PC | 1109 | CG5514-PC | 262..601 | 202..527 | 236 | 26.2 | Plus |