Clone BS11456 Report

Search the DGRC for BS11456

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptWASp-RA
Protein status:BS11456.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11456.3prime Sequence

777 bp (732 high quality bases) assembled on 2006-05-08

> BS11456.3prime
ATGGTCTAGAAAGCTTTTAGTCCCACTCCCCTTCGTTGTCCGAGGACTCG
GTTTCGTCCTCATCCGAGTGGATGGCGTTTCCACGCGCCGCCAGCGCTCG
ACGCAGTGCATCGGCCAATGCGTCAGTGCCTGCTCCACTGTCGCTGTTTC
GCTGACTGCCCAGCTCCCGTTCCTTGGCCGGCTTCAAAACAGTGCCCTGA
CGGATATCCTTCATTAAATCGCTGCGTGAGTCGCCACTTCCAGTGCTGAG
AGCAGTCGTGTCCACTTTCTTCAGCTGGGTTCCCTTGCGTATGGCGTCCA
TCAGTGCATTGCGTGGATCTGGAGCCGCCGGAGCTGCTGGCCGGGCTGCT
TGAGTCGGTGCGTGCGTGGTCGTAATGACGGGGATCTCTCCCACTGGCAT
GGGCGGGGGCGGTGGTGGCGGCACCGCTGCTGGTGGTGGCGGTGGTGGAG
GTGGCGGCGCCACAACAGGCGCACTGACTGGTGGCGGTGGTGGAGCGGTG
CTAATGGGTGGTGGTCTGTTAGGTGGTGGAGGAGCTCGTGCGGCGCCCGG
CACAGTAACGGGAACTGCGGGCGGTGGTTGTCTTGCCGGCGGCAGCGGAG
GAGCAGTTCTTTGGTTGCCATTAGATGGATGACGGGTTGGCACCGGTGGT
GGCATGGGAGCCGCTGTTTCCGTAGGGGATTCTACACTGTATTGCTTCAC
CGAAGCCAGGACATTGTTGCTCTGTATGAAGTCGTAGATGAAGGCGCGGG
TGTCCCGATCTTTTAGCTCCACTTCCG

BS11456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1520-PA 1584 WASp-RA 824..1584 777..17 3805 100 Minus
CG1520-PB 1584 WASp-RB 824..1584 777..17 3805 100 Minus
CG1520-PC 1485 WASp-RC 725..1485 777..17 3805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-RD 2734 CG1520-RD 1030..1790 777..17 3805 100 Minus
WASp-RC 2500 CG1520-RC 796..1556 777..17 3805 100 Minus
WASp-RB 2682 CG1520-RB 978..1738 777..17 3805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28825450..28825703 17..270 1270 100 Plus
3R 32079331 3R 28825765..28825954 269..458 950 100 Plus
3R 32079331 3R 28826010..28826174 458..622 825 100 Plus
3R 32079331 3R 28826242..28826396 623..777 775 100 Plus
Blast to na_te.dros performed on 2015-02-02 20:36:02 has no hits.

BS11456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:44 Download gff for BS11456.3prime
Subject Subject Range Query Range Percent Splice Strand
WASp-PA 824..1584 17..777 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:29 Download gff for BS11456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1520-PC 725..1485 17..777 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:25 Download gff for BS11456.3prime
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 978..1738 17..777 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:47 Download gff for BS11456.3prime
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 978..1738 17..777 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:47 Download gff for BS11456.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28825450..28825701 17..268 100 <- Plus
3R 28825765..28825953 269..457 100 <- Plus
3R 28826010..28826174 458..622 100 <- Plus
3R 28826242..28826396 623..777 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:25 Download gff for BS11456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24651172..24651423 17..268 100 <- Plus
arm_3R 24651487..24651675 269..457 100 <- Plus
arm_3R 24651732..24651896 458..622 100 <- Plus
arm_3R 24651964..24652118 623..777 100   Plus

BS11456.5prime Sequence

884 bp (705 high quality bases) assembled on 2006-05-08

> BS11456.5prime
GAAGTTATCAGTCGACATGAGCAGCGGAATGAGGTCGCAGGACGGTCCAC
GGGCGAAGGTCAATGCCGCCAGTACGCTGCTCACCCAGGAGGAGAATGAG
GCCGTCTTCAAGCTGCTGGGCAAGAAGTGCCAGACACTCAACACCGCCGT
GGTGCAGATCTACAAGACGGAGGGCAGCGCCCATGCCCACTGGAAGAAGC
GACACACCGGGGTGGTGTGCTTCGTCAAGGATAGCGCCATCCGATCCTAT
TTCATGCGCGCCTACTGCCTGATCAAGAACGAGCTAATCTGGGAGCACGA
GATCTACGATGGCATGGAGGTGGTCAAGTCGCGACCCTTTCTGCTTACCT
TCGAGGGCAGTGATGGTCATGTGGGACTAAACTTCGTGTCCGAGGAGGAG
TGCGACTCCTTCTTCCGCATTGTGGACGCCACCATAGAGACGCGTAACCG
CAAACGACAAGAGAAACGCAACCGGCAGAAAAGCCAACAGGCGCCCAATG
CTCCATTGCCTCAGGTGCAGCGGGAGCCGGCCAGGCCACCACCCATGCAA
GGTGGGTTGTCCTCCACGGACGGCGTTCAGCTGAGGAACAACAAGATCAA
CTCGGTGACACTGACGCCTGCACCAGCGCCAGCGCAGTCGAAGAATTTCC
TATCCAGTAGCTTTGGTCTGGGCAACAATGCGAAGGACAAGAAGCGCAAG
GTGACCAAGGCGGACATCAGCCGGCCGACAAACTTTGTACACCTCAGCCA
CGTGGGCTGGGATGCGCAGAAGGGATTTGATCTGGCGGGCAACGAGAACG
ACGAAGTGCTGAACGAGTTCTTCGTGAAGGCAGGTGTCTCGGAAGTGGAG
CTAAAAGATCGGGACACCCGCGCCTTCATCTACG

BS11456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1520-PA 1584 WASp-RA 1..868 17..884 4340 100 Plus
CG1520-PB 1584 WASp-RB 1..868 17..884 4340 100 Plus
CG1520-PC 1485 WASp-RC 17..769 132..884 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-RD 2734 CG1520-RD 207..1074 17..884 4340 100 Plus
WASp-RB 2682 CG1520-RB 155..1022 17..884 4340 100 Plus
WASp-RA 2794 CG1520-RA 267..1134 17..884 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28826352..28826874 884..362 2615 100 Minus
3R 32079331 3R 28826946..28827177 362..131 1160 100 Minus
3R 32079331 3R 28830502..28830618 133..17 585 100 Minus
Blast to na_te.dros performed 2015-02-13 08:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 7852..7919 577..643 130 67.6 Plus

BS11456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:45 Download gff for BS11456.5prime
Subject Subject Range Query Range Percent Splice Strand
WASp-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:30 Download gff for BS11456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1520-PB 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:51 Download gff for BS11456.5prime
Subject Subject Range Query Range Percent Splice Strand
WASp-RA 267..1134 17..884 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:51 Download gff for BS11456.5prime
Subject Subject Range Query Range Percent Splice Strand
WASp-RA 267..1134 17..884 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:51 Download gff for BS11456.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28826947..28827174 134..361 100 <- Minus
3R 28830502..28830618 17..133 100   Minus
3R 28826352..28826874 362..884 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:51 Download gff for BS11456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24652074..24652596 362..884 100 <- Minus
arm_3R 24652669..24652896 134..361 100 <- Minus
arm_3R 24656224..24656340 17..133 100   Minus

BS11456.complete Sequence

1616 bp assembled on 2007-10-26

GenBank Submission: FJ636874

> BS11456.complete
GAAGTTATCAGTCGACATGAGCAGCGGAATGAGGTCGCAGGACGGTCCAC
GGGCGAAGGTCAATGCCGCCAGTACGCTGCTCACCCAGGAGGAGAATGAG
GCCGTCTTCAAGCTGCTGGGCAAGAAGTGCCAGACACTCAACACCGCCGT
GGTGCAGATCTACAAGACGGAGGGCAGCGCCCATGCCCACTGGAAGAAGC
GACACACCGGGGTGGTGTGCTTCGTCAAGGATAGCGCCATCCGATCCTAT
TTCATGCGCGCCTACTGCCTGATCAAGAACGAGCTAATCTGGGAGCACGA
GATCTACGATGGCATGGAGGTGGTCAAGTCGCGACCCTTTCTGCTTACCT
TCGAGGGCAGTGATGGTCATGTGGGACTAAACTTCGTGTCCGAGGAGGAG
TGCGACTCCTTCTTCCGCATTGTGGACGCCACCATAGAGACGCGTAACCG
CAAACGACAAGAGAAACGCAACCGGCAGAAAAGCCAACAGGCGCCCAATG
CTCCATTGCCTCAGGTGCAGCGGGAGCCGGCCAGGCCACCACCCATGCAA
GGTGGGTTGTCCTCCACGGACGGCGTTCAGCTGAGGAACAACAAGATCAA
CTCGGTGACACTGACGCCTGCACCAGCGCCAGCGCAGTCGAAGAATTTCC
TATCCAGTAGCTTTGGTCTGGGCAACAATGCGAAGGACAAGAAGCGCAAG
GTGACCAAGGCGGACATCAGCCGGCCGACAAACTTTGTACACCTCAGCCA
CGTGGGCTGGGATGCGCAGAAGGGATTTGATCTGGCGGGCAACGAGAACG
ACGAAGTGCTGAACGAGTTCTTCGTGAAGGCAGGTGTCTCGGAAGTGGAG
CTAAAAGATCGGGACACCCGCGCCTTCATCTACGACTTCATACAGAGCAA
CAATGTCCTGGCTTCGGTGAAGCAATACAGTGTAGAATCCCCTACGGAAA
CAGCGGCTCCCATGCCACCACCGGTGCCAACCCGTCATCCATCTAATGGC
AACCAAAGAACTGCTCCTCCGCTGCCGCCGGCAAGACAACCACCGCCCGC
AGTTCCCGTTACTGTGCCGGGCGCCGCACGAGCTCCTCCACCACCTAACA
GACCACCACCCATTAGCACCGCTCCACCACCGCCACCAGTCAGTGCGCCT
GTTGTGGCGCCGCCACCTCCACCACCGCCACCACCAGCAGCGGTGCCGCC
ACCACCGCCCCCGCCCATGCCAGTGGGAGAGATCCCCGTCATTACGACCA
CGCACGCACCGACTCAAGCAGCCCGGCCAGCAGCTCCGGCGGCTCCAGAT
CCACGCAATGCACTGATGGACGCCATACGCAAGGGAACCCAGCTGAAGAA
AGTGGACACGACTGCTCTCAGCACTGGAAGTGGCGACTCACGCAGCGATT
TAATGAAGGATATCCGTCAGGGCACTGTTTTGAAGCCGGCCAAGGAACGG
GAGCTGGGCAGTCAGCGAAACAGCGACAGTGGAGCAGGCACTGACGCATT
GGCCGATGCACTGCGTCGAGCGCTGGCGGCGCGTGGAAACGCCATCCACT
CGGATGAGGACGAAACCGAGTCCTCGGACAACGAAGGGGAGTGGGACTAA
AAGCTTTCTAGACCAT

BS11456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-RD 1584 CG1520-PD 1..1584 17..1600 7920 100 Plus
WASp-RB 1584 CG1520-PB 1..1584 17..1600 7920 100 Plus
WASp-RA 1584 CG1520-PA 1..1584 17..1600 7920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-RD 2734 CG1520-RD 207..1790 17..1600 7920 100 Plus
WASp-RB 2682 CG1520-RB 155..1738 17..1600 7920 100 Plus
WASp-RA 2794 CG1520-RA 267..1850 17..1600 7920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28826242..28826874 994..362 3165 100 Minus
3R 32079331 3R 28825450..28825703 1600..1347 1270 100 Minus
3R 32079331 3R 28826946..28827177 362..131 1160 100 Minus
3R 32079331 3R 28825765..28825954 1348..1159 950 100 Minus
3R 32079331 3R 28826010..28826174 1159..995 825 100 Minus
3R 32079331 3R 28830502..28830618 133..17 585 100 Minus
Blast to na_te.dros performed 2014-11-27 16:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 7852..7919 577..643 130 67.6 Plus

BS11456.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:06 Download gff for BS11456.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 1..1584 17..1600 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:55 Download gff for BS11456.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 155..1738 17..1600 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:09 Download gff for BS11456.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RA 267..1848 17..1598 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:34 Download gff for BS11456.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 155..1736 17..1598 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:59 Download gff for BS11456.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RA 267..1848 17..1598 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:59 Download gff for BS11456.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28825452..28825701 1349..1598 100 <- Minus
3R 28825765..28825953 1160..1348 100 <- Minus
3R 28826010..28826174 995..1159 100 <- Minus
3R 28826242..28826874 362..994 100 <- Minus
3R 28826947..28827174 134..361 100 <- Minus
3R 28830502..28830618 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:09 Download gff for BS11456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24651174..24651423 1349..1598 100 <- Minus
arm_3R 24651487..24651675 1160..1348 100 <- Minus
arm_3R 24651732..24651896 995..1159 100 <- Minus
arm_3R 24651964..24652596 362..994 100 <- Minus
arm_3R 24652669..24652896 134..361 100 <- Minus
arm_3R 24656224..24656340 17..133 100   Minus

BS11456.pep Sequence

Translation from 16 to 1599

> BS11456.pep
MSSGMRSQDGPRAKVNAASTLLTQEENEAVFKLLGKKCQTLNTAVVQIYK
TEGSAHAHWKKRHTGVVCFVKDSAIRSYFMRAYCLIKNELIWEHEIYDGM
EVVKSRPFLLTFEGSDGHVGLNFVSEEECDSFFRIVDATIETRNRKRQEK
RNRQKSQQAPNAPLPQVQREPARPPPMQGGLSSTDGVQLRNNKINSVTLT
PAPAPAQSKNFLSSSFGLGNNAKDKKRKVTKADISRPTNFVHLSHVGWDA
QKGFDLAGNENDEVLNEFFVKAGVSEVELKDRDTRAFIYDFIQSNNVLAS
VKQYSVESPTETAAPMPPPVPTRHPSNGNQRTAPPLPPARQPPPAVPVTV
PGAARAPPPPNRPPPISTAPPPPPVSAPVVAPPPPPPPPPAAVPPPPPPP
MPVGEIPVITTTHAPTQAARPAAPAAPDPRNALMDAIRKGTQLKKVDTTA
LSTGSGDSRSDLMKDIRQGTVLKPAKERELGSQRNSDSGAGTDALADALR
RALAARGNAIHSDEDETESSDNEGEWD*

BS11456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-PD 527 CG1520-PD 1..527 1..527 2771 100 Plus
WASp-PB 527 CG1520-PB 1..527 1..527 2771 100 Plus
WASp-PA 527 CG1520-PA 1..527 1..527 2771 100 Plus
WASp-PC 494 CG1520-PC 3..494 36..527 2584 99.4 Plus
CG5514-PC 1109 CG5514-PC 262..601 202..527 236 26.2 Plus