Clone BS11458 Report

Search the DGRC for BS11458

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCbp20-RA
Protein status:BS11458.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11458.3prime Sequence

495 bp (494 high quality bases) assembled on 2006-05-08

> BS11458.3prime
ATGGTCTAGAAAGCTTCTAGCGATTGTCCGTGTTGGGTGCAATCTTCTGT
GACAACAGTTTGCCATAACCCCCGCGGCCGGCATCGTAATCCGTGCGGTA
TTCATCTCGCACCTGTCCGCCGGTTTTGCCGCGTCCATACTGCCTGCCCT
CCACGAAGCCGGCGTCCCAGTCCACACGAATCAGACGGTCGTCCAAGCGA
GTGCCATTCACAAATCTCATGGCCGCCTCCGCCTCCGATCGGACATAGTA
CTCCACGAAGCAGAAGCCGCAGGGCGTCTTCTTATACTTGTCCAGGCCCA
TCACAATCACACGAACATCGCCGCAGCGGGAGAAGAGCTCGTGGATCTGC
TCCTCGGTGGTGTAGAAGCTCAAGTTTCCCACGTAAAGTGTACACGAGTC
GCGGAGCGATCGCTCTTGCTCGGAGCGCGAGCCCTTGAAGTGCTGATCGC
GATATGAGCTTAATTCCACAGATGCGAACATGTCGACTGATAACT

BS11458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12357-PA 465 Cbp20-RA 1..465 481..17 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-RA 600 CG12357-RA 69..533 481..17 2325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18164830..18165049 435..216 1100 100 Minus
3R 32079331 3R 18165172..18165372 217..17 1005 100 Minus
3R 32079331 3R 18164729..18164777 481..433 245 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:44:09 has no hits.

BS11458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:47 Download gff for BS11458.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-PA 1..465 17..481 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:31 Download gff for BS11458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12357-PA 1..465 17..481 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:33:40 Download gff for BS11458.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 69..535 11..481 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:09 Download gff for BS11458.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 69..535 11..481 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:09 Download gff for BS11458.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18164729..18164776 434..481 100 -> Minus
3R 18164832..18165049 216..433 100 -> Minus
3R 18165174..18165374 11..215 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:33:40 Download gff for BS11458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13990451..13990498 434..481 100 -> Minus
arm_3R 13990554..13990771 216..433 100 -> Minus
arm_3R 13990896..13991096 11..215 98   Minus

BS11458.5prime Sequence

495 bp (494 high quality bases) assembled on 2006-05-08

> BS11458.5prime
GAAGTTATCAGTCGACATGTTCGCATCTGTGGAATTAAGCTCATATCGCG
ATCAGCACTTCAAGGGCTCGCGCTCCGAGCAAGAGCGATCGCTCCGCGAC
TCGTGTACACTTTACGTGGGAAACTTGAGCTTCTACACCACCGAGGAGCA
GATCCACGAGCTCTTCTCCCGCTGCGGCGATGTTCGTGTGATTGTGATGG
GCCTGGACAAGTATAAGAAGACGCCCTGCGGCTTCTGCTTCGTGGAGTAC
TATGTCCGATCGGAGGCGGAGGCGGCCATGAGATTTGTGAATGGCACTCG
CTTGGACGACCGTCTGATTCGTGTGGACTGGGACGCCGGCTTCGTGGAGG
GCAGGCAGTATGGACGCGGCAAAACCGGCGGACAGGTGCGAGATGAATAC
CGCACGGATTACGATGCCGGCCGCGGGGGTTATGGCAAACTGTTGTCACA
GAAGATTGCACCCAACACGGACAATCGCTAGAAGCTTTCTAGACC

BS11458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12357-PA 465 Cbp20-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-RA 600 CG12357-RA 69..533 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18164830..18165049 63..282 1100 100 Plus
3R 32079331 3R 18165172..18165372 281..481 1005 100 Plus
3R 32079331 3R 18164729..18164777 17..65 245 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:19:20 has no hits.

BS11458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:48 Download gff for BS11458.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:33 Download gff for BS11458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12357-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:34 Download gff for BS11458.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 69..535 17..487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:12 Download gff for BS11458.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 69..535 17..487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:12 Download gff for BS11458.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18164832..18165049 65..282 100 -> Plus
3R 18165174..18165374 283..487 98   Plus
3R 18164729..18164776 17..64 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:34 Download gff for BS11458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13990451..13990498 17..64 100 -> Plus
arm_3R 13990554..13990771 65..282 100 -> Plus
arm_3R 13990896..13991096 283..487 98   Plus

BS11458.complete Sequence

497 bp assembled on 2006-11-01

GenBank Submission: FJ636875

> BS11458.complete
GAAGTTATCAGTCGACATGTTCGCATCTGTGGAATTAAGCTCATATCGCG
ATCAGCACTTCAAGGGCTCGCGCTCCGAGCAAGAGCGATCGCTCCGCGAC
TCGTGTACACTTTACGTGGGAAACTTGAGCTTCTACACCACCGAGGAGCA
GATCCACGAGCTCTTCTCCCGCTGCGGCGATGTTCGTGTGATTGTGATGG
GCCTGGACAAGTATAAGAAGACGCCCTGCGGCTTCTGCTTCGTGGAGTAC
TATGTCCGATCGGAGGCGGAGGCGGCCATGAGATTTGTGAATGGCACTCG
CTTGGACGACCGTCTGATTCGTGTGGACTGGGACGCCGGCTTCGTGGAGG
GCAGGCAGTATGGACGCGGCAAAACCGGCGGACAGGTGCGAGATGAATAC
CGCACGGATTACGATGCCGGCCGCGGGGGTTATGGCAAACTGTTGTCACA
GAAGATTGCACCCAACACGGACAATCGCTAGAAGCTTTCTAGACCAT

BS11458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-RA 465 CG12357-PA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-RA 600 CG12357-RA 69..533 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18164830..18165049 63..282 1100 100 Plus
3R 32079331 3R 18165172..18165372 281..481 1005 100 Plus
3R 32079331 3R 18164729..18164777 17..65 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:00:06 has no hits.

BS11458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:55 Download gff for BS11458.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:54 Download gff for BS11458.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 67..533 17..487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:50 Download gff for BS11458.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 74..533 22..481 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:55 Download gff for BS11458.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 67..533 17..487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:41 Download gff for BS11458.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 74..533 22..481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:41 Download gff for BS11458.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18164734..18164776 22..64 100 -> Plus
3R 18164832..18165049 65..282 100 -> Plus
3R 18165174..18165372 283..481 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:50 Download gff for BS11458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13990896..13991094 283..481 100   Plus
arm_3R 13990456..13990498 22..64 100 -> Plus
arm_3R 13990554..13990771 65..282 100 -> Plus

BS11458.pep Sequence

Translation from 16 to 480

> BS11458.pep
MFASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELF
SRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRL
IRVDWDAGFVEGRQYGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPN
TDNR*

BS11458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-PA 154 CG12357-PA 1..154 1..154 819 100 Plus
SC35-PD 195 CG5442-PD 24..96 31..103 144 39.7 Plus
SC35-PC 195 CG5442-PC 24..96 31..103 144 39.7 Plus
SC35-PB 195 CG5442-PB 24..96 31..103 144 39.7 Plus