Clone Sequence Records
BS11458.3prime Sequence
495 bp (494 high quality bases) assembled on 2006-05-08
> BS11458.3prime
ATGGTCTAGAAAGCTTCTAGCGATTGTCCGTGTTGGGTGCAATCTTCTGT
GACAACAGTTTGCCATAACCCCCGCGGCCGGCATCGTAATCCGTGCGGTA
TTCATCTCGCACCTGTCCGCCGGTTTTGCCGCGTCCATACTGCCTGCCCT
CCACGAAGCCGGCGTCCCAGTCCACACGAATCAGACGGTCGTCCAAGCGA
GTGCCATTCACAAATCTCATGGCCGCCTCCGCCTCCGATCGGACATAGTA
CTCCACGAAGCAGAAGCCGCAGGGCGTCTTCTTATACTTGTCCAGGCCCA
TCACAATCACACGAACATCGCCGCAGCGGGAGAAGAGCTCGTGGATCTGC
TCCTCGGTGGTGTAGAAGCTCAAGTTTCCCACGTAAAGTGTACACGAGTC
GCGGAGCGATCGCTCTTGCTCGGAGCGCGAGCCCTTGAAGTGCTGATCGC
GATATGAGCTTAATTCCACAGATGCGAACATGTCGACTGATAACT
BS11458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12357-PA | 465 | Cbp20-RA | 1..465 | 481..17 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-RA | 600 | CG12357-RA | 69..533 | 481..17 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18164830..18165049 | 435..216 | 1100 | 100 | Minus |
3R | 32079331 | 3R | 18165172..18165372 | 217..17 | 1005 | 100 | Minus |
3R | 32079331 | 3R | 18164729..18164777 | 481..433 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:44:09 has no hits.
BS11458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:47 Download gff for
BS11458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-PA | 1..465 | 17..481 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:31 Download gff for
BS11458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12357-PA | 1..465 | 17..481 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:33:40 Download gff for
BS11458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 69..535 | 11..481 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:09 Download gff for
BS11458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 69..535 | 11..481 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:09 Download gff for
BS11458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18164729..18164776 | 434..481 | 100 | -> | Minus |
3R | 18164832..18165049 | 216..433 | 100 | -> | Minus |
3R | 18165174..18165374 | 11..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:33:40 Download gff for
BS11458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13990451..13990498 | 434..481 | 100 | -> | Minus |
arm_3R | 13990554..13990771 | 216..433 | 100 | -> | Minus |
arm_3R | 13990896..13991096 | 11..215 | 98 | | Minus |
BS11458.5prime Sequence
495 bp (494 high quality bases) assembled on 2006-05-08
> BS11458.5prime
GAAGTTATCAGTCGACATGTTCGCATCTGTGGAATTAAGCTCATATCGCG
ATCAGCACTTCAAGGGCTCGCGCTCCGAGCAAGAGCGATCGCTCCGCGAC
TCGTGTACACTTTACGTGGGAAACTTGAGCTTCTACACCACCGAGGAGCA
GATCCACGAGCTCTTCTCCCGCTGCGGCGATGTTCGTGTGATTGTGATGG
GCCTGGACAAGTATAAGAAGACGCCCTGCGGCTTCTGCTTCGTGGAGTAC
TATGTCCGATCGGAGGCGGAGGCGGCCATGAGATTTGTGAATGGCACTCG
CTTGGACGACCGTCTGATTCGTGTGGACTGGGACGCCGGCTTCGTGGAGG
GCAGGCAGTATGGACGCGGCAAAACCGGCGGACAGGTGCGAGATGAATAC
CGCACGGATTACGATGCCGGCCGCGGGGGTTATGGCAAACTGTTGTCACA
GAAGATTGCACCCAACACGGACAATCGCTAGAAGCTTTCTAGACC
BS11458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12357-PA | 465 | Cbp20-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-RA | 600 | CG12357-RA | 69..533 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18164830..18165049 | 63..282 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 18165172..18165372 | 281..481 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 18164729..18164777 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:19:20 has no hits.
BS11458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:48 Download gff for
BS11458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-PA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:33 Download gff for
BS11458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12357-PA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:34 Download gff for
BS11458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 69..535 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:12 Download gff for
BS11458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 69..535 | 17..487 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:12 Download gff for
BS11458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18164832..18165049 | 65..282 | 100 | -> | Plus |
3R | 18165174..18165374 | 283..487 | 98 | | Plus |
3R | 18164729..18164776 | 17..64 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:34 Download gff for
BS11458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13990451..13990498 | 17..64 | 100 | -> | Plus |
arm_3R | 13990554..13990771 | 65..282 | 100 | -> | Plus |
arm_3R | 13990896..13991096 | 283..487 | 98 | | Plus |
BS11458.complete Sequence
497 bp assembled on 2006-11-01
GenBank Submission: FJ636875
> BS11458.complete
GAAGTTATCAGTCGACATGTTCGCATCTGTGGAATTAAGCTCATATCGCG
ATCAGCACTTCAAGGGCTCGCGCTCCGAGCAAGAGCGATCGCTCCGCGAC
TCGTGTACACTTTACGTGGGAAACTTGAGCTTCTACACCACCGAGGAGCA
GATCCACGAGCTCTTCTCCCGCTGCGGCGATGTTCGTGTGATTGTGATGG
GCCTGGACAAGTATAAGAAGACGCCCTGCGGCTTCTGCTTCGTGGAGTAC
TATGTCCGATCGGAGGCGGAGGCGGCCATGAGATTTGTGAATGGCACTCG
CTTGGACGACCGTCTGATTCGTGTGGACTGGGACGCCGGCTTCGTGGAGG
GCAGGCAGTATGGACGCGGCAAAACCGGCGGACAGGTGCGAGATGAATAC
CGCACGGATTACGATGCCGGCCGCGGGGGTTATGGCAAACTGTTGTCACA
GAAGATTGCACCCAACACGGACAATCGCTAGAAGCTTTCTAGACCAT
BS11458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-RA | 465 | CG12357-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-RA | 600 | CG12357-RA | 69..533 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18164830..18165049 | 63..282 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 18165172..18165372 | 281..481 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 18164729..18164777 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:06 has no hits.
BS11458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:55 Download gff for
BS11458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:54 Download gff for
BS11458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 67..533 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:50 Download gff for
BS11458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 74..533 | 22..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:55 Download gff for
BS11458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 67..533 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:41 Download gff for
BS11458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 74..533 | 22..481 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:41 Download gff for
BS11458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18164734..18164776 | 22..64 | 100 | -> | Plus |
3R | 18164832..18165049 | 65..282 | 100 | -> | Plus |
3R | 18165174..18165372 | 283..481 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:50 Download gff for
BS11458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13990896..13991094 | 283..481 | 100 | | Plus |
arm_3R | 13990456..13990498 | 22..64 | 100 | -> | Plus |
arm_3R | 13990554..13990771 | 65..282 | 100 | -> | Plus |
BS11458.pep Sequence
Translation from 16 to 480
> BS11458.pep
MFASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELF
SRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRL
IRVDWDAGFVEGRQYGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPN
TDNR*
BS11458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-PA | 154 | CG12357-PA | 1..154 | 1..154 | 819 | 100 | Plus |
SC35-PD | 195 | CG5442-PD | 24..96 | 31..103 | 144 | 39.7 | Plus |
SC35-PC | 195 | CG5442-PC | 24..96 | 31..103 | 144 | 39.7 | Plus |
SC35-PB | 195 | CG5442-PB | 24..96 | 31..103 | 144 | 39.7 | Plus |