Clone BS11461 Report

Search the DGRC for BS11461

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG11737-RA
Protein status:BS11461.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11461.3prime Sequence

878 bp (752 high quality bases) assembled on 2006-05-08

> BS11461.3prime
ATGGTCTAGAAAGCTTTCAGGAGGCAAAGGAGTAGGCCGGCAACGATGAC
TTTTCTACTATGTTCAGTGCCTTGATGGTGTCCAGCGCCTGTTGTTGACT
GCTCAGCCCGAATACATCAAAGGCGCTCAGATTAAACTTGCTCAGTCGAT
CGCCCGAAATGGCCTGCAGAAACTTGTAGTAGCTGGGGCGCAGGCTCTTG
GGTTCCAATATTCCCGCATGGAAAAGCACAGCCGTGAAAAAGGAGTACAA
GAAAAGCATAAAGTTGGGGATGTGTGGCACAATACCATGTTCTTGGCCCT
TTGTGCAAAGAATCTGTAGCGCCTTCCACATAACATACAGGGCTACCGTG
TTATCCGGATACTGGGTGAAGGATATAGAGGCAATTAACGACGCTGGAAT
TGCAAATCTGGCATCGTCCCGGTTAAAACTGTGCCGCAGCAGGCAGGACA
CCGACTTATAGAGAAATGAAAAGCTGCCCATGAAGATGCCCAGTTGTAGA
GTACCACGGTTGAAGATCATCTTCTTCCACGGCATTTTTCCAGCCGTAAT
TCGTTTGACGTTCATGACCAGCTTAAGGGCAACCTGAAGACCCACTCCAC
CCACAAAGGGTTTAATTCCACCCATCAGGGAGTATCCAATGCAGCTCTGT
TGATGCCGACAGCTTTCGTGTTTTGCGCGAATGAGATTGCTGTACACGCG
CACCCAGTCGGATACAGTCGAAAAACTGACGGTGGGACGTCGGCGGTCTG
GCGCAGGCTGCTCACCGGGCACTGCGGGCCCGGACTTGACAATCGGCCCC
GCCTCCTCCTTGCCCACGAAAATGCGAAGGATGTTGAAGATGGAATCCTT
GGTGGTGCCAGTACGATAGATGTAGAGC

BS11461.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-PA 1368 CG11737-RA 507..1368 878..17 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-RC 1731 CG11737-RC 650..1511 878..17 4310 100 Minus
CG11737-RB 1800 CG11737-RB 719..1580 878..17 4310 100 Minus
CG11737-RA 2126 CG11737-RA 1045..1906 878..17 4310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8520126..8520549 878..455 2120 100 Minus
3R 32079331 3R 8520800..8520968 315..147 845 100 Minus
3R 32079331 3R 8520602..8520744 456..314 715 100 Minus
3R 32079331 3R 8521028..8521158 147..17 655 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:28:53 has no hits.

BS11461.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:53 Download gff for BS11461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-PA 507..1368 17..878 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:40 Download gff for BS11461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-PA 507..1368 17..878 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:11 Download gff for BS11461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-RB 719..1582 13..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:26 Download gff for BS11461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1045..1908 13..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:26 Download gff for BS11461.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8520126..8520549 455..878 100 -> Minus
3R 8520604..8520744 314..454 100 -> Minus
3R 8520802..8520968 147..313 100 -> Minus
3R 8521029..8521160 13..146 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:11 Download gff for BS11461.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4345848..4346271 455..878 100 -> Minus
arm_3R 4346326..4346466 314..454 100 -> Minus
arm_3R 4346524..4346690 147..313 100 -> Minus
arm_3R 4346751..4346882 13..146 98   Minus

BS11461.5prime Sequence

953 bp (804 high quality bases) assembled on 2006-05-08

> BS11461.5prime
GAAGTTATCAGTCGACATGGCGGGACAAAGCAAGCTGATCGATCCACTGT
GCATCACTTGCAAGGAGTTCCAGCACCCATGGACGGACCACTGCGTGAGC
GCCACCGCCGGTATACTACTCTCGGCCACGCCCTACTGCCTGCGGGTCTA
CACAATAGTGTACGCCCTGTCCTTGCTGATGCGCCACCGCATTCCAAGTC
GCGACGATCTGCGCAAGACGCTGCTAGGGATCATCCAATCGACGGCTTTT
CTAGTTACTAATGCCTACACCTTTATCCTGTACAACTGTGCGCTGCGGCA
CATGCTCGGGAGGTACAACTTCTACACAGTGGCCTTTGTGCCCTGCTTTT
TGGCCTCGTTTTCGGCCATTTTGGTTGAGAGACCAGCCCGCCGACCACTA
CTCACTCTCTACGTGGCCAATGTGGCCACTGAAGCGCTGTGGAAAATGGC
AGAATCGAGGGGATGGGTGCGCTCCGTTCCTAATGGACAGACACTCATCT
TTGGCGTGAGCATGGCGGCGCTGCTCTACATCTATCGTACTGGCACCACC
AAGGATTCCATCTTCAACATCCTTCGCATTTTCGTGGGCAAGGAGGAGGC
GGGGCCGATTGTCAAGTCCGGGCCCGCAGTGCCCGGTGAGCAGCCTGCGC
CAGACCGCCGACGTCCCACCGTCAGTTTTTCGACTGTATCCGACTGGGTG
CGCGTGTACAGCAATCTCATTCGCGCAAAACACGAAAGCTGTCGGCATCA
ACAGAGCTGCATTGGATACTCCCTGATGGGTGGAATTAAACCCTTTGTGG
GTGGAGTGGGTCTTCAGGTTGCCCTTAAGCTGGTCATGAACGTCAAACGA
ATTACGGCTGGAAAAATGCCGTGAAAGAAGATGATCTTCAACCGTGGTAC
TCTACAACTGGGCATCTTCATGGGCAGCTTTCATTTCTCTATAAGTCGGT
GTC

BS11461.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-PA 1368 CG11737-RA 1..915 17..931 4550 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-RC 1731 CG11737-RC 144..1081 17..953 4650 99.8 Plus
CG11737-RB 1800 CG11737-RB 213..1150 17..953 4650 99.8 Plus
CG11737-RA 2126 CG11737-RA 539..1476 17..953 4650 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8519620..8520549 17..945 4585 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 19:41:33 has no hits.

BS11461.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:54 Download gff for BS11461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-PA 1..938 17..953 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:42 Download gff for BS11461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-PA 1..938 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:19:59 Download gff for BS11461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-RB 204..1150 9..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:22 Download gff for BS11461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 530..1476 9..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:22 Download gff for BS11461.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8519611..8520549 9..945 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:19:59 Download gff for BS11461.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4345333..4346271 9..945 99   Plus

BS11461.complete Sequence

1400 bp assembled on 2006-11-01

GenBank Submission: FJ636876

> BS11461.complete
GAAGTTATCAGTCGACATGGCGGGACAAAGCAAGCTGATCGATCCACTGT
GCATCACTTGCAAGGAGTTCCAGCACCCATGGACGGACCACTGCGTGAGC
GCCACCGCCGGTATACTACTCTCGGCCACGCCCTACTGCCTGCGGGTCTA
CACAATAGTGTACGCCCTGTCCTTGCTGATGCGCCACCGCATTCCAAGTC
GCGACGATCTGCGCAAGACGCTGCTAGGGATCATCCAATCGACGGCTTTT
CTAGTTACTAATGCCTACACCTTTATCCTGTACAACTGTGCGCTGCGGCA
CATGCTCGGGAGGTACAACTTCTACACAGTGGCCTTTGTGCCCTGCTTTT
TGGCCTCGTTTTCGGCCATTTTGGTTGAGAGACCAGCCCGCCGACCACTA
CTCACTCTCTACGTGGCCAATGTGGCCACTGAAGCGCTGTGGAAAATGGC
AGAATCGAGGGGATGGGTGCGCTCCGTTCCTAATGGACAGACACTCATCT
TTGGCGTGAGCATGGCGGCGCTGCTCTACATCTATCGTACTGGCACCACC
AAGGATTCCATCTTCAACATCCTTCGCATTTTCGTGGGCAAGGAGGAGGC
GGGGCCGATTGTCAAGTCCGGGCCCGCAGTGCCCGGTGAGCAGCCTGCGC
CAGACCGCCGACGTCCCACCGTCAGTTTTTCGACTGTATCCGACTGGGTG
CGCGTGTACAGCAATCTCATTCGCGCAAAACACGAAAGCTGTCGGCATCA
ACAGAGCTGCATTGGATACTCCCTGATGGGTGGAATTAAACCCTTTGTGG
GTGGAGTGGGTCTTCAGGTTGCCCTTAAGCTGGTCATGAACGTCAAACGA
ATTACGGCTGGAAAAATGCCGTGGAAGAAGATGATCTTCAACCGTGGTAC
TCTACAACTGGGCATCTTCATGGGCAGCTTTTCATTTCTCTATAAGTCGG
TGTCCTGCCTGCTGCGGCACAGTTTTAACCGGGACGATGCCAGATTTGCA
ATTCCAGCGTCGTTAATTGCCTCTATATCCTTCACCCAGTATCCGGATAA
CACGGTAGCCCTGTATGTTATGTGGAAGGCGCTACAGATTCTTTGCACAA
AGGGCCAAGAACATGGTATTGTGCCACACATCCCCAACTTTATGCTTTTC
TTGTACTCCTTTTTCACGGCTGTGCTTTTCCATGCGGGAATATTGGAACC
CAAGAGCCTGCGCCCCAGCTACTACAAGTTTCTGCAGGCCATTTCGGGCG
ATCGACTGAGCAAGTTTAATCTGAGCGCCTTTGATGTATTCGGGCTGAGC
AGTCAACAACAGGCGCTGGACACCATCAAGGCACTGAACATAGTAGAAAA
GTCATCGTTGCCGGCCTACTCCTTTGCCTCCTGAAAGCTTTCTAGACCAT

BS11461.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-RC 1368 CG11737-PC 1..1368 17..1384 6840 100 Plus
CG11737-RB 1368 CG11737-PB 1..1368 17..1384 6840 100 Plus
CG11737-RA 1368 CG11737-PA 1..1368 17..1384 6840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-RC 1731 CG11737-RC 144..1511 17..1384 6840 100 Plus
CG11737-RB 1800 CG11737-RB 213..1580 17..1384 6840 100 Plus
CG11737-RA 2126 CG11737-RA 539..1906 17..1384 6840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8519620..8520549 17..946 4650 100 Plus
3R 32079331 3R 8520800..8520968 1086..1254 845 100 Plus
3R 32079331 3R 8520602..8520744 945..1087 715 100 Plus
3R 32079331 3R 8521028..8521158 1254..1384 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:46:17 has no hits.

BS11461.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:47 Download gff for BS11461.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..1368 17..1384 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:54 Download gff for BS11461.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 534..1912 9..1388 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:05 Download gff for BS11461.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RB 213..1579 17..1383 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:47 Download gff for BS11461.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 534..1912 9..1388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:27 Download gff for BS11461.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 539..1905 17..1383 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:27 Download gff for BS11461.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8519620..8520549 17..946 100 -> Plus
3R 8520604..8520744 947..1087 100 -> Plus
3R 8520802..8520968 1088..1254 100 -> Plus
3R 8521029..8521157 1255..1383 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:05 Download gff for BS11461.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4345342..4346271 17..946 100 -> Plus
arm_3R 4346326..4346466 947..1087 100 -> Plus
arm_3R 4346524..4346690 1088..1254 100 -> Plus
arm_3R 4346751..4346879 1255..1383 100   Plus

BS11461.pep Sequence

Translation from 16 to 1383

> BS11461.pep
MAGQSKLIDPLCITCKEFQHPWTDHCVSATAGILLSATPYCLRVYTIVYA
LSLLMRHRIPSRDDLRKTLLGIIQSTAFLVTNAYTFILYNCALRHMLGRY
NFYTVAFVPCFLASFSAILVERPARRPLLTLYVANVATEALWKMAESRGW
VRSVPNGQTLIFGVSMAALLYIYRTGTTKDSIFNILRIFVGKEEAGPIVK
SGPAVPGEQPAPDRRRPTVSFSTVSDWVRVYSNLIRAKHESCRHQQSCIG
YSLMGGIKPFVGGVGLQVALKLVMNVKRITAGKMPWKKMIFNRGTLQLGI
FMGSFSFLYKSVSCLLRHSFNRDDARFAIPASLIASISFTQYPDNTVALY
VMWKALQILCTKGQEHGIVPHIPNFMLFLYSFFTAVLFHAGILEPKSLRP
SYYKFLQAISGDRLSKFNLSAFDVFGLSSQQQALDTIKALNIVEKSSLPA
YSFAS*

BS11461.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-PC 455 CG11737-PC 1..455 1..455 2357 100 Plus
CG11737-PB 455 CG11737-PB 1..455 1..455 2357 100 Plus
CG11737-PA 455 CG11737-PA 1..455 1..455 2357 100 Plus
CG31259-PB 455 CG31259-PB 1..452 1..452 1187 50.5 Plus
CG31259-PA 455 CG31259-PA 1..452 1..452 1187 50.5 Plus