Clone Sequence Records
BS11461.3prime Sequence
878 bp (752 high quality bases) assembled on 2006-05-08
> BS11461.3prime
ATGGTCTAGAAAGCTTTCAGGAGGCAAAGGAGTAGGCCGGCAACGATGAC
TTTTCTACTATGTTCAGTGCCTTGATGGTGTCCAGCGCCTGTTGTTGACT
GCTCAGCCCGAATACATCAAAGGCGCTCAGATTAAACTTGCTCAGTCGAT
CGCCCGAAATGGCCTGCAGAAACTTGTAGTAGCTGGGGCGCAGGCTCTTG
GGTTCCAATATTCCCGCATGGAAAAGCACAGCCGTGAAAAAGGAGTACAA
GAAAAGCATAAAGTTGGGGATGTGTGGCACAATACCATGTTCTTGGCCCT
TTGTGCAAAGAATCTGTAGCGCCTTCCACATAACATACAGGGCTACCGTG
TTATCCGGATACTGGGTGAAGGATATAGAGGCAATTAACGACGCTGGAAT
TGCAAATCTGGCATCGTCCCGGTTAAAACTGTGCCGCAGCAGGCAGGACA
CCGACTTATAGAGAAATGAAAAGCTGCCCATGAAGATGCCCAGTTGTAGA
GTACCACGGTTGAAGATCATCTTCTTCCACGGCATTTTTCCAGCCGTAAT
TCGTTTGACGTTCATGACCAGCTTAAGGGCAACCTGAAGACCCACTCCAC
CCACAAAGGGTTTAATTCCACCCATCAGGGAGTATCCAATGCAGCTCTGT
TGATGCCGACAGCTTTCGTGTTTTGCGCGAATGAGATTGCTGTACACGCG
CACCCAGTCGGATACAGTCGAAAAACTGACGGTGGGACGTCGGCGGTCTG
GCGCAGGCTGCTCACCGGGCACTGCGGGCCCGGACTTGACAATCGGCCCC
GCCTCCTCCTTGCCCACGAAAATGCGAAGGATGTTGAAGATGGAATCCTT
GGTGGTGCCAGTACGATAGATGTAGAGC
BS11461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-PA | 1368 | CG11737-RA | 507..1368 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-RC | 1731 | CG11737-RC | 650..1511 | 878..17 | 4310 | 100 | Minus |
CG11737-RB | 1800 | CG11737-RB | 719..1580 | 878..17 | 4310 | 100 | Minus |
CG11737-RA | 2126 | CG11737-RA | 1045..1906 | 878..17 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8520126..8520549 | 878..455 | 2120 | 100 | Minus |
3R | 32079331 | 3R | 8520800..8520968 | 315..147 | 845 | 100 | Minus |
3R | 32079331 | 3R | 8520602..8520744 | 456..314 | 715 | 100 | Minus |
3R | 32079331 | 3R | 8521028..8521158 | 147..17 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:28:53 has no hits.
BS11461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:53 Download gff for
BS11461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-PA | 507..1368 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:40 Download gff for
BS11461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-PA | 507..1368 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:11 Download gff for
BS11461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RB | 719..1582 | 13..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:26 Download gff for
BS11461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 1045..1908 | 13..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:26 Download gff for
BS11461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8520126..8520549 | 455..878 | 100 | -> | Minus |
3R | 8520604..8520744 | 314..454 | 100 | -> | Minus |
3R | 8520802..8520968 | 147..313 | 100 | -> | Minus |
3R | 8521029..8521160 | 13..146 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:11 Download gff for
BS11461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4345848..4346271 | 455..878 | 100 | -> | Minus |
arm_3R | 4346326..4346466 | 314..454 | 100 | -> | Minus |
arm_3R | 4346524..4346690 | 147..313 | 100 | -> | Minus |
arm_3R | 4346751..4346882 | 13..146 | 98 | | Minus |
BS11461.5prime Sequence
953 bp (804 high quality bases) assembled on 2006-05-08
> BS11461.5prime
GAAGTTATCAGTCGACATGGCGGGACAAAGCAAGCTGATCGATCCACTGT
GCATCACTTGCAAGGAGTTCCAGCACCCATGGACGGACCACTGCGTGAGC
GCCACCGCCGGTATACTACTCTCGGCCACGCCCTACTGCCTGCGGGTCTA
CACAATAGTGTACGCCCTGTCCTTGCTGATGCGCCACCGCATTCCAAGTC
GCGACGATCTGCGCAAGACGCTGCTAGGGATCATCCAATCGACGGCTTTT
CTAGTTACTAATGCCTACACCTTTATCCTGTACAACTGTGCGCTGCGGCA
CATGCTCGGGAGGTACAACTTCTACACAGTGGCCTTTGTGCCCTGCTTTT
TGGCCTCGTTTTCGGCCATTTTGGTTGAGAGACCAGCCCGCCGACCACTA
CTCACTCTCTACGTGGCCAATGTGGCCACTGAAGCGCTGTGGAAAATGGC
AGAATCGAGGGGATGGGTGCGCTCCGTTCCTAATGGACAGACACTCATCT
TTGGCGTGAGCATGGCGGCGCTGCTCTACATCTATCGTACTGGCACCACC
AAGGATTCCATCTTCAACATCCTTCGCATTTTCGTGGGCAAGGAGGAGGC
GGGGCCGATTGTCAAGTCCGGGCCCGCAGTGCCCGGTGAGCAGCCTGCGC
CAGACCGCCGACGTCCCACCGTCAGTTTTTCGACTGTATCCGACTGGGTG
CGCGTGTACAGCAATCTCATTCGCGCAAAACACGAAAGCTGTCGGCATCA
ACAGAGCTGCATTGGATACTCCCTGATGGGTGGAATTAAACCCTTTGTGG
GTGGAGTGGGTCTTCAGGTTGCCCTTAAGCTGGTCATGAACGTCAAACGA
ATTACGGCTGGAAAAATGCCGTGAAAGAAGATGATCTTCAACCGTGGTAC
TCTACAACTGGGCATCTTCATGGGCAGCTTTCATTTCTCTATAAGTCGGT
GTC
BS11461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-PA | 1368 | CG11737-RA | 1..915 | 17..931 | 4550 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-RC | 1731 | CG11737-RC | 144..1081 | 17..953 | 4650 | 99.8 | Plus |
CG11737-RB | 1800 | CG11737-RB | 213..1150 | 17..953 | 4650 | 99.8 | Plus |
CG11737-RA | 2126 | CG11737-RA | 539..1476 | 17..953 | 4650 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8519620..8520549 | 17..945 | 4585 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:41:33 has no hits.
BS11461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:54 Download gff for
BS11461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-PA | 1..938 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:42 Download gff for
BS11461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-PA | 1..938 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:19:59 Download gff for
BS11461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RB | 204..1150 | 9..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:22 Download gff for
BS11461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 530..1476 | 9..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:22 Download gff for
BS11461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8519611..8520549 | 9..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:19:59 Download gff for
BS11461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4345333..4346271 | 9..945 | 99 | | Plus |
BS11461.complete Sequence
1400 bp assembled on 2006-11-01
GenBank Submission: FJ636876
> BS11461.complete
GAAGTTATCAGTCGACATGGCGGGACAAAGCAAGCTGATCGATCCACTGT
GCATCACTTGCAAGGAGTTCCAGCACCCATGGACGGACCACTGCGTGAGC
GCCACCGCCGGTATACTACTCTCGGCCACGCCCTACTGCCTGCGGGTCTA
CACAATAGTGTACGCCCTGTCCTTGCTGATGCGCCACCGCATTCCAAGTC
GCGACGATCTGCGCAAGACGCTGCTAGGGATCATCCAATCGACGGCTTTT
CTAGTTACTAATGCCTACACCTTTATCCTGTACAACTGTGCGCTGCGGCA
CATGCTCGGGAGGTACAACTTCTACACAGTGGCCTTTGTGCCCTGCTTTT
TGGCCTCGTTTTCGGCCATTTTGGTTGAGAGACCAGCCCGCCGACCACTA
CTCACTCTCTACGTGGCCAATGTGGCCACTGAAGCGCTGTGGAAAATGGC
AGAATCGAGGGGATGGGTGCGCTCCGTTCCTAATGGACAGACACTCATCT
TTGGCGTGAGCATGGCGGCGCTGCTCTACATCTATCGTACTGGCACCACC
AAGGATTCCATCTTCAACATCCTTCGCATTTTCGTGGGCAAGGAGGAGGC
GGGGCCGATTGTCAAGTCCGGGCCCGCAGTGCCCGGTGAGCAGCCTGCGC
CAGACCGCCGACGTCCCACCGTCAGTTTTTCGACTGTATCCGACTGGGTG
CGCGTGTACAGCAATCTCATTCGCGCAAAACACGAAAGCTGTCGGCATCA
ACAGAGCTGCATTGGATACTCCCTGATGGGTGGAATTAAACCCTTTGTGG
GTGGAGTGGGTCTTCAGGTTGCCCTTAAGCTGGTCATGAACGTCAAACGA
ATTACGGCTGGAAAAATGCCGTGGAAGAAGATGATCTTCAACCGTGGTAC
TCTACAACTGGGCATCTTCATGGGCAGCTTTTCATTTCTCTATAAGTCGG
TGTCCTGCCTGCTGCGGCACAGTTTTAACCGGGACGATGCCAGATTTGCA
ATTCCAGCGTCGTTAATTGCCTCTATATCCTTCACCCAGTATCCGGATAA
CACGGTAGCCCTGTATGTTATGTGGAAGGCGCTACAGATTCTTTGCACAA
AGGGCCAAGAACATGGTATTGTGCCACACATCCCCAACTTTATGCTTTTC
TTGTACTCCTTTTTCACGGCTGTGCTTTTCCATGCGGGAATATTGGAACC
CAAGAGCCTGCGCCCCAGCTACTACAAGTTTCTGCAGGCCATTTCGGGCG
ATCGACTGAGCAAGTTTAATCTGAGCGCCTTTGATGTATTCGGGCTGAGC
AGTCAACAACAGGCGCTGGACACCATCAAGGCACTGAACATAGTAGAAAA
GTCATCGTTGCCGGCCTACTCCTTTGCCTCCTGAAAGCTTTCTAGACCAT
BS11461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-RC | 1368 | CG11737-PC | 1..1368 | 17..1384 | 6840 | 100 | Plus |
CG11737-RB | 1368 | CG11737-PB | 1..1368 | 17..1384 | 6840 | 100 | Plus |
CG11737-RA | 1368 | CG11737-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-RC | 1731 | CG11737-RC | 144..1511 | 17..1384 | 6840 | 100 | Plus |
CG11737-RB | 1800 | CG11737-RB | 213..1580 | 17..1384 | 6840 | 100 | Plus |
CG11737-RA | 2126 | CG11737-RA | 539..1906 | 17..1384 | 6840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8519620..8520549 | 17..946 | 4650 | 100 | Plus |
3R | 32079331 | 3R | 8520800..8520968 | 1086..1254 | 845 | 100 | Plus |
3R | 32079331 | 3R | 8520602..8520744 | 945..1087 | 715 | 100 | Plus |
3R | 32079331 | 3R | 8521028..8521158 | 1254..1384 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:46:17 has no hits.
BS11461.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:47 Download gff for
BS11461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 1..1368 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:54 Download gff for
BS11461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 534..1912 | 9..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:05 Download gff for
BS11461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RB | 213..1579 | 17..1383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:47 Download gff for
BS11461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 534..1912 | 9..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:27 Download gff for
BS11461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 539..1905 | 17..1383 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:27 Download gff for
BS11461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8519620..8520549 | 17..946 | 100 | -> | Plus |
3R | 8520604..8520744 | 947..1087 | 100 | -> | Plus |
3R | 8520802..8520968 | 1088..1254 | 100 | -> | Plus |
3R | 8521029..8521157 | 1255..1383 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:05 Download gff for
BS11461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4345342..4346271 | 17..946 | 100 | -> | Plus |
arm_3R | 4346326..4346466 | 947..1087 | 100 | -> | Plus |
arm_3R | 4346524..4346690 | 1088..1254 | 100 | -> | Plus |
arm_3R | 4346751..4346879 | 1255..1383 | 100 | | Plus |
BS11461.pep Sequence
Translation from 16 to 1383
> BS11461.pep
MAGQSKLIDPLCITCKEFQHPWTDHCVSATAGILLSATPYCLRVYTIVYA
LSLLMRHRIPSRDDLRKTLLGIIQSTAFLVTNAYTFILYNCALRHMLGRY
NFYTVAFVPCFLASFSAILVERPARRPLLTLYVANVATEALWKMAESRGW
VRSVPNGQTLIFGVSMAALLYIYRTGTTKDSIFNILRIFVGKEEAGPIVK
SGPAVPGEQPAPDRRRPTVSFSTVSDWVRVYSNLIRAKHESCRHQQSCIG
YSLMGGIKPFVGGVGLQVALKLVMNVKRITAGKMPWKKMIFNRGTLQLGI
FMGSFSFLYKSVSCLLRHSFNRDDARFAIPASLIASISFTQYPDNTVALY
VMWKALQILCTKGQEHGIVPHIPNFMLFLYSFFTAVLFHAGILEPKSLRP
SYYKFLQAISGDRLSKFNLSAFDVFGLSSQQQALDTIKALNIVEKSSLPA
YSFAS*
BS11461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-PC | 455 | CG11737-PC | 1..455 | 1..455 | 2357 | 100 | Plus |
CG11737-PB | 455 | CG11737-PB | 1..455 | 1..455 | 2357 | 100 | Plus |
CG11737-PA | 455 | CG11737-PA | 1..455 | 1..455 | 2357 | 100 | Plus |
CG31259-PB | 455 | CG31259-PB | 1..452 | 1..452 | 1187 | 50.5 | Plus |
CG31259-PA | 455 | CG31259-PA | 1..452 | 1..452 | 1187 | 50.5 | Plus |