Clone Sequence Records
BS11463.complete Sequence
1949 bp assembled on 2009-12-07
GenBank Submission: KX803442
> BS11463.complete
GAAGTTATCAGTCGACATGCTGCTCAAAGGCGCACAGCTGCTGCGATGCG
GATTGGTCTCACCACACCGGAACTCGAACTTCCGCCTGACCTGTCGCTTC
CTCTCCATTCAGTATGGAGATGCAAAGATCCTCACCCCTGCCGTCAAACA
GTACGTGGAAAAGTGCGTGGAGCTCTGCCAACCGGAAAGGGTGCACATCT
GTGATGGTACTGAGGTCGAGAGCAAGTTGCTCCAGGGCATCATGCTGAAG
AAGGGAACCATCATTCCTCTGCCGAAGTACGAGAATTGCTGGCTGGCAAG
AACCAATCCGGCGGATGTGGCTAGAGTGGAGGGAAAAACGTTCATCTCAA
CGGATTCGAAGGAGCAGACAGTACCGGTTACGGAGAAGGCCACACCGGGA
ATGCTGGGTAACTGGATAGCCGAAAAGGACATGCAGGCGGCGATCAAGGA
AAGATTCCCCGGCTGCATGAAAGGTCGCACCATGTATGTTATTCCTTTTA
GCATGGGTCCAGTGGGCTCACCTCTCTCCAAAATCGGAATCGAGATCACA
GACTCACCATACGTCGTCGAGTCCATGAAGATCATGACTAGGGCGGGCAA
TCCAGTGCTTAATTATCTGCAATCTGGGGATGGTCAGTTTGTCAAGTGCC
TGCATTCCGTGGGTACGCCCAAAAGTGGTGTCCAGGCAATGCCATCCTGG
CCCTGCGATCCCGAACGCACTATTGTGCTGCACAAGCCAGCAGAAAATGA
GATTGTATCTTATGGATCTGGGTATGGTGGTAACTCCCTGCTGGGCAAGA
AGTGCCTCGCTCTGAGGATTGGCAGCACCATTGCCAAACGAGAGGGCTGG
CTGGCCGAGCACATGTTGATACTGGGCATCACCAATCCGCAAGGTAAGAA
GATCTACATAGCTGCCGCCTTTCCATCAGCTTGCGGTAAGACCAACCTGG
CGATGATGACTCCTACCCTGCCTGGCTACAAAGTGGAGTGCGTGGGCGAT
GACATCGCCTGGATGAAGTTCGATAACAAGGGTGTGCTGCGAGCGATTAA
TCCGGAGAATGGATTCTTTGGCGTGGCGCCCGGAACGTCGAGGGCCACCA
ATCCCATAGCCATGGATACGATCTTCCGAAACTCTGTCTTTACGAACGTG
GCCTCTACATCCGATGGAGGTGTCTACTGGGAGGGAATGGAAAAGGATCA
GCTGAAGGGGGTGACTGTCACGGACTGGTTGGGTAAACTCTGGTCCCAGG
AATCCGGAAAGCCAGCTGCCCATCCCAACTCCAGGTTCTGTACACCCGCC
TCTCAGTGTCCCATTATTGATCCCGCCTGGGAGGATAGCGAAGGAGTGCC
CATCTCCGCAATTCTTTTCGGAGGTCGTCGTCCCAGTGGAGTTCCCTTGG
TTTACGAGGCTCGAGACTGGAAGCACGGCGTATTTATTGGAGCTGCTATG
AGGAGCGAGGCCACGGCAGCCGCTGAGTTCAAGGGCAAGGTCATCATGCA
CGATCCCTTCGCCATGAGACCCTTTTTCGGCTACAACTTCGGCGACTATC
TGGGTCACTGGCTAAGCATGGAGCAGCGTGGCCAGGTGCCCAAGATCTTT
CACGTAAATTGGTTCCGAAAGAGCAGTGAGGGCAAGTTCCTTTGGCCCGG
ATTCGGGGAGAACTCACGAGTCCTGGACTGGATCTTCCGGCGGGTGGAGG
GCGAGCAGTGCTTCGAGGACTCTCCCATTGGCCGCCTGCCCAGCAAGAAT
TCATTGAACTTGGATAGTTTGGAAAACATTGATCTCGACCAGCTTTTCGA
TCTGCCAAAAGATTTCTGGGAGCAGGAGGTGGCTGCCATAGAGAGGTACT
TCGAGGAGCAGGTGGGCCACCATCTGCCAGGTGCCGTGGCCGAGGAGCTG
AGGGAGCTGAAGGCGCGTGTTGCTGACATGTGAAAGCTTTCTAGACCAT
BS11463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10924-RA | 1917 | CG10924-PA | 1..1917 | 17..1933 | 9570 | 99.9 | Plus |
| CG10924-RB | 1692 | CG10924-PB | 1..1692 | 242..1933 | 8445 | 99.9 | Plus |
| Pepck-RA | 1944 | CG17725-PA | 699..1739 | 691..1731 | 1920 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10924-RA | 3449 | CG10924-RA | 337..2253 | 17..1933 | 9570 | 99.9 | Plus |
| CG10924-RB | 2019 | CG10924-RB | 67..1949 | 51..1933 | 9400 | 99.9 | Plus |
| CG45087-RA | 2486 | CG45087-RA | 970..2010 | 691..1731 | 1920 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18532671..18534553 | 51..1933 | 9400 | 99.9 | Plus |
| 2R | 25286936 | 2R | 18537900..18538940 | 691..1731 | 1920 | 79 | Plus |
| 2R | 25286936 | 2R | 18537665..18537800 | 453..588 | 320 | 82.4 | Plus |
| 2R | 25286936 | 2R | 18537481..18537533 | 269..321 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:08:46 has no hits.
BS11463.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:09 Download gff for
BS11463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 335..2250 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:08 Download gff for
BS11463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 337..2252 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:49 Download gff for
BS11463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 335..2250 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:58 Download gff for
BS11463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 337..2252 | 17..1932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:58 Download gff for
BS11463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18527766..18527800 | 17..51 | 100 | -> | Plus |
| 2R | 18532672..18534552 | 52..1932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:08 Download gff for
BS11463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14415271..14415305 | 17..51 | 100 | -> | Plus |
| arm_2R | 14420177..14422057 | 52..1932 | 99 | | Plus |
BS11463.3prime Sequence
896 bp (848 high quality bases) assembled on 2006-05-08
> BS11463.3prime
ATGGTCTAGAAAGCTTTCACATGTCAGCAACACGCGCCTTCAGCTCCCTC
AGCTCCTCGGCCACGGCACCTGGCAGATGGTGGCCCACCTGCTCCTCGAA
GTACCTCTCTATGGCAGCCACCTCCTGCTCCCAGAAATCTTTTGGCAGAT
CGAAAAGCTGGTCGAGATCAATGTTTTCCAAACTATCCAAGTTCAATGAA
TTCTTGCTGGGCAGGCGGCCAATGGGAGAGTCCTCGAAGCACTGCTCGCC
CTCCACCCGCCGGAAGATCCAGTCCAGGACTCGTGAGTTCTCCCCGAATC
CGGGCCAAAGGAACTTGCCCTCACTGCTCTTTCGGAACCAATTTACGTGA
AAGATCTTGGGCACCTGGCCACGCTGCTCCATGCTTAGCCAGTGACCCAG
ATAGTCGCCGAAGTTGTAGCCGAAAAAGGGTCTCATGGCGAAGGGATCGT
GCATGATGACCTTGCCCTTGAACTCAGCGGCTGCCGTGGCCTCGCTCCTC
ATAGCAGCTCCAATAAATACGCCGTGCTTCCAGTCTCGAGCCTCGTAAAC
CAAGGGAACTCCACTGGGACGACGACCTCCGAAAAGAATTGCGGAGATGG
GCACTCCTTCGCTATCCTCCCAGGCGGGATCAATAATGGGACACTGAGAG
GCGGGTGTACAGAACCTGGAGTTGGGATGGGCAGCTGGCTTTCCGGATTC
CTGGGACCAGAGTTTACCCAACCAGTCCGTGACAGTCACCCCCTTCAGCT
GATCCTTTTCCATTCCCTCCCAGTAGACACCTCCATCGGATGTAGAGGCC
ACGTTCGTAAAGACAGAGTTTCGGAAGATCGTATCCATGGCTATGGGATT
GGTGGGCCTCGACGTTCCGGGCGCCACGCCAAAGAATCCATTCTCC
BS11463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10924-PA | 1917 | CG10924-RA | 1038..1917 | 896..17 | 4375 | 99.8 | Minus |
| CG17725-PB | 1503 | Pepck-RB | 1047..1115 | 470..402 | 195 | 91.3 | Minus |
| CG17725-PA | 1944 | Pepck-RA | 1488..1556 | 470..402 | 195 | 91.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10924-RB | 2019 | CG10924-RB | 1070..1949 | 896..17 | 4385 | 99.9 | Minus |
| CG10924-RA | 3449 | CG10924-RA | 1374..2253 | 896..17 | 4385 | 99.9 | Minus |
| CG45087-RA | 2486 | CG45087-RA | 1334..2010 | 895..219 | 1150 | 78.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18533674..18534553 | 896..17 | 4385 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18538264..18538940 | 895..219 | 1150 | 78 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:47:59 has no hits.
BS11463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:57 Download gff for
BS11463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-PA | 1038..1917 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:46 Download gff for
BS11463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-PA | 1038..1917 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:47:28 Download gff for
BS11463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 1374..2253 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:41 Download gff for
BS11463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 1374..2253 | 17..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:41 Download gff for
BS11463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18533674..18534553 | 17..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:47:28 Download gff for
BS11463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14421179..14422058 | 17..896 | 99 | | Minus |
BS11463.5prime Sequence
770 bp (741 high quality bases) assembled on 2006-05-08
> BS11463.5prime
GAAGTTATCAGTCGACATGCTGCTCAAAGGCGCACAGCTGCTGCGATGCG
GATTGGTCTCACCACACCGGAACTCGAACTTCCGCCTGACCTGTCGCTTC
CTCTCCATTCAGTATGGAGATGCAAAGATCCTCACCCCTGCCGTCAAACA
GTACGTGGAAAAGTGCGTGGAGCTCTGCCAACCGGAAAGGGTGCACATCT
GTGATGGTACTGAGGTCGAGAGCAAGTTGCTCCAGGGCATCATGCTGAAG
AAGGGAACCATCATTCCTCTGCCGAAGTACGAGAATTGCTGGCTGGCAAG
AACCAATCCGGCGGATGTGGCTAGAGTGGAGGGAAAAACGTTCATCTCAA
CGGATTCGAAGGAGCAGACAGTACCGGTTACGGAGAAGGCCACACCGGGA
ATGCTGGGTAACTGGATAGCCGAAAAGGACATGCAGGCGGCGATCAAGGA
AAGATTCCCCGGCTGCATGAAAGGTCGCACCATGTATGTTATTCCTTTTA
GCATGGGTCCAGTGGGCTCACCTCTCTCCAAAATCGGAATCGAGATCACA
GACTCACCATACGTCGTCGAGTCCATGAAGATCATGACTAGGGCGGGCAA
TCCAGTGCTTAATTATCTGCAATCTGGGGATGGTCAGTTTGTCAAGTGCC
TGCATTCCGTGGGTACGCCCAAAAGTGGTGTCCAGGCAATGCCATCCTGG
CCCTGCGATCCCGAACGCACTATTGTGCTGCACAAGCCAGCAGAAAATGA
GATTGTATCTTATGGATCTG
BS11463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10924-PA | 1917 | CG10924-RA | 1..754 | 17..770 | 3745 | 99.8 | Plus |
| CG17725-PB | 1503 | Pepck-RB | 23..56 | 453..486 | 145 | 97 | Plus |
| CG17725-PA | 1944 | Pepck-RA | 464..497 | 453..486 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10924-RA | 3449 | CG10924-RA | 337..1090 | 17..770 | 3755 | 99.9 | Plus |
| CG10924-RB | 2019 | CG10924-RB | 67..786 | 51..770 | 3585 | 99.9 | Plus |
| CG45087-RA | 2486 | CG45087-RA | 735..870 | 453..588 | 320 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18532671..18533390 | 51..770 | 3585 | 99.9 | Plus |
| 2R | 25286936 | 2R | 18537665..18537800 | 453..588 | 320 | 82.4 | Plus |
| 2R | 25286936 | 2R | 18537481..18537533 | 269..321 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:01:47 has no hits.
BS11463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:09:58 Download gff for
BS11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-PA | 1..754 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:47 Download gff for
BS11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-PA | 1..754 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:16:43 Download gff for
BS11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 335..1090 | 14..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:40 Download gff for
BS11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 335..1090 | 14..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:40 Download gff for
BS11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18527764..18527800 | 14..51 | 97 | -> | Plus |
| 2R | 18532672..18533390 | 52..770 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:16:43 Download gff for
BS11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14415269..14415305 | 14..51 | 97 | -> | Plus |
| arm_2R | 14420177..14420895 | 52..770 | 99 | | Plus |
BS11463.pep Sequence
Translation from 16 to 1932
> BS11463.pep
MLLKGAQLLRCGLVSPHRNSNFRLTCRFLSIQYGDAKILTPAVKQYVEKC
VELCQPERVHICDGTEVESKLLQGIMLKKGTIIPLPKYENCWLARTNPAD
VARVEGKTFISTDSKEQTVPVTEKATPGMLGNWIAEKDMQAAIKERFPGC
MKGRTMYVIPFSMGPVGSPLSKIGIEITDSPYVVESMKIMTRAGNPVLNY
LQSGDGQFVKCLHSVGTPKSGVQAMPSWPCDPERTIVLHKPAENEIVSYG
SGYGGNSLLGKKCLALRIGSTIAKREGWLAEHMLILGITNPQGKKIYIAA
AFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDNKGVLRAINPENGF
FGVAPGTSRATNPIAMDTIFRNSVFTNVASTSDGGVYWEGMEKDQLKGVT
VTDWLGKLWSQESGKPAAHPNSRFCTPASQCPIIDPAWEDSEGVPISAIL
FGGRRPSGVPLVYEARDWKHGVFIGAAMRSEATAAAEFKGKVIMHDPFAM
RPFFGYNFGDYLGHWLSMEQRGQVPKIFHVNWFRKSSEGKFLWPGFGENS
RVLDWIFRRVEGEQCFEDSPIGRLPSKNSLNLDSLENIDLDQLFDLPKDF
WEQEVAAIERYFEEQVGHHLPGAVAEELRELKARVADM*
BS11463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10924-PA | 638 | CG10924-PA | 1..638 | 1..638 | 3416 | 100 | Plus |
| CG10924-PB | 563 | CG10924-PB | 1..563 | 76..638 | 3022 | 100 | Plus |
| Pepck-PA | 647 | CG17725-PA | 16..647 | 11..638 | 2447 | 70 | Plus |
