Clone Sequence Records
BS11465.3prime Sequence
923 bp (774 high quality bases) assembled on 2006-05-08
> BS11465.3prime
ATGGTCTAGAAAGCTTTCACATGCTCACGAACTTGACCAGTTTTCGACTG
CTCCTCCGAAGCAGCACCTTGCCCAGGGGCTGGCCGAAGCCCTCGAACTG
TTGGTAGACATGCAGGCCCCGCACCACCGTGGCATGCACCACGCCCCGCA
ACTTTTGACCCGCGTACGGGGTGGCCTTCGTGGCCGTGTAGAGCAGCTCC
GGGCCCACGGTGAACTCCTCCTCGGGACTCCACACACAGAAGTCGGCATC
GTAGCCCTCGGCAATGCGGCCCTTCGAGGCGGACAAGCCGCACAGGTTCG
CCGGCTCCTGGCACATCAGACGATGGATGTCCGCGATGGTCAGGTTGGCG
GATCCTCGCCGATTGGCGGCCGCTGTCCAAACGACCGACAGGCTGAGTTG
CAACGAGTTGATGCCCGGCCACGCCTTCAGGAAGTTGCCACGCCCCCTTC
CGCAGGTGAGAGCACGTGCACCCGGCGTCGCCGGCGAGTGATCACTGCCA
ATCATGCGGATGGCTCCGCCCGGTCTCAGAGCCTGCCACAATTGCTCCTG
ATTGCGACGCTCCCGAATCGGTGGCCAGGTCTTGAACTCCGTGCCGCAAT
CGGGCACATCCTCGGCCGCCAGGGCCAGGTAATGCGGACAGGTGTCCACC
GTTAGATTCCCGCCCTGCCGTCGACACTCCTCCACCAGCGGCAGACTTTC
GCCGCTGCTGCAGTTGAGGATGTGTATGCAGCGCCGCGGGTGGCGATTCG
CCAGCCGGCAGAGCAACTGCGTCGCGGAAATCTCCATTTGGGGTGGACGA
GTCACCAGGAAAGTGCCATACTCCCGGGGCGCCTCCTCGTCCGGATGGAT
TTCGGTGGTCAGCGGCAGCTCAGCATGCACCGCTACGATTGCTTCCCCTT
CAGCCTGATCCTTGTNCAACTGG
BS11465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-PA | 1461 | CG6106-RA | 555..1461 | 923..17 | 4516 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-RB | 2446 | CG6106-RB | 577..1483 | 923..17 | 4524 | 99.9 | Minus |
CG6106-RA | 1878 | CG6106-RA | 577..1483 | 923..17 | 4524 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18359930..18360457 | 881..354 | 2640 | 100 | Minus |
X | 23542271 | X | 18361225..18361564 | 356..17 | 1700 | 100 | Minus |
X | 23542271 | X | 18359513..18359558 | 923..878 | 219 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:44:30 has no hits.
BS11465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:00 Download gff for
BS11465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-PA | 555..1461 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:49 Download gff for
BS11465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-PA | 555..1461 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:00 Download gff for
BS11465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 577..1483 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:08 Download gff for
BS11465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 577..1483 | 17..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:08 Download gff for
BS11465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18359513..18359555 | 881..923 | 97 | -> | Minus |
X | 18359931..18360456 | 355..880 | 100 | -> | Minus |
X | 18361227..18361564 | 17..354 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:00 Download gff for
BS11465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18255260..18255597 | 17..354 | 100 | | Minus |
arm_X | 18253546..18253588 | 881..923 | 97 | -> | Minus |
arm_X | 18253964..18254489 | 355..880 | 100 | -> | Minus |
BS11465.5prime Sequence
840 bp (744 high quality bases) assembled on 2006-05-08
> BS11465.5prime
GAAGTTATCAGTCGACATGGATCTGTTGTTTCTCAGCCGGCGAATTTTCC
TGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGTGGAT
ACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTAATAC
CTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGACCTGG
TACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCCGGGT
CGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCGCCGG
TGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCCACCG
TTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAAGATC
TATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGGATCA
GCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACATTGT
GCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGAATCT
CAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAGGGGA
AGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATCCATC
CGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCGTCCA
CCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGAATCG
CCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAAAGTC
TGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCT
BS11465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-PA | 1461 | CG6106-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-RB | 2446 | CG6106-RB | 23..846 | 17..840 | 4120 | 100 | Plus |
CG6106-RA | 1878 | CG6106-RA | 23..846 | 17..840 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18359064..18359558 | 122..616 | 2475 | 100 | Plus |
X | 23542271 | X | 18359930..18360157 | 613..840 | 1140 | 100 | Plus |
X | 23542271 | X | 18358903..18359008 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:04:32 has no hits.
BS11465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:01 Download gff for
BS11465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:50 Download gff for
BS11465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:51:26 Download gff for
BS11465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 21..846 | 14..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:45 Download gff for
BS11465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 21..846 | 14..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:45 Download gff for
BS11465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18358901..18359008 | 14..122 | 99 | -> | Plus |
X | 18359065..18359555 | 123..613 | 100 | -> | Plus |
X | 18359931..18360157 | 614..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:51:26 Download gff for
BS11465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18252934..18253041 | 14..122 | 99 | -> | Plus |
arm_X | 18253098..18253588 | 123..613 | 100 | -> | Plus |
arm_X | 18253964..18254190 | 614..840 | 100 | | Plus |
BS11465.complete Sequence
1493 bp assembled on 2006-11-01
GenBank Submission: FJ636877
> BS11465.complete
GAAGTTATCAGTCGACATGGATCTGTTGTTTCTCAGCCGGCGAATTTTCC
TGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGTGGAT
ACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTAATAC
CTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGACCTGG
TACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCCGGGT
CGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCGCCGG
TGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCCACCG
TTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAAGATC
TATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGGATCA
GCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACATTGT
GCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGAATCT
CAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAGGGGA
AGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATCCATC
CGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCGTCCA
CCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGAATCG
CCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAAAGTC
TGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCTAACGGTGGAC
ACCTGTCCGCATTACCTGGCCCTGGCGGCCGAGGATGTGCCCGATTGCGG
CACGGAGTTCAAGACCTGGCCACCGATTCGGGAGCGTCGCAATCAGGAGC
AATTGTGGCAGGCTCTGAGACCGGGCGGAGCCATCCGCATGATTGGCAGT
GATCACTCGCCGGCGACGCCGGGTGCACGTGCTCTCACCTGCGGAAGGGG
GCGTGGCAACTTCCTGAAGGCGTGGCCGGGCATCAACTCGTTGCAACTCA
GCCTGTCGGTCGTTTGGACAGCGGCCGCCAATCGGCGAGGATCCGCCAAC
CTGACCATCGCGGACATCCATCGTCTGATGTGCCAGGAGCCGGCGAACCT
GTGCGGCTTGTCCGCCTCGAAGGGCCGCATTGCCGAGGGCTACGATGCCG
ACTTCTGTGTGTGGAGTCCCGAGGAGGAGTTCACCGTGGGCCCGGAGCTG
CTCTACACGGCCACGAAGGCCACCCCGTACGCGGGTCAAAAGTTGCGGGG
CGTGGTGCATGCCACGGTGGTGCGGGGCCTGCATGTCTACCAACAGTTCG
AGGGCTTCGGCCAGCCCCTGGGCAAGGTGCTGCTTCGGAGGAGCAGTCGA
AAACTGGTCAAGTTCGTGAGCATGTGAAAGCTTTCTAGACCAT
BS11465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-RB | 1461 | CG6106-PB | 1..1461 | 17..1477 | 7305 | 100 | Plus |
CG6106-RA | 1461 | CG6106-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-RB | 2446 | CG6106-RB | 23..1483 | 17..1477 | 7305 | 100 | Plus |
CG6106-RA | 1878 | CG6106-RA | 23..1483 | 17..1477 | 7305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18359930..18360457 | 613..1140 | 2640 | 100 | Plus |
X | 23542271 | X | 18359064..18359558 | 122..616 | 2475 | 100 | Plus |
X | 23542271 | X | 18361225..18361564 | 1138..1477 | 1700 | 100 | Plus |
X | 23542271 | X | 18358903..18359008 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:01:34 has no hits.
BS11465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:30 Download gff for
BS11465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 1..1461 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:36 Download gff for
BS11465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 19..1481 | 14..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:44 Download gff for
BS11465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 23..1482 | 17..1476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:30 Download gff for
BS11465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 19..1481 | 14..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:03 Download gff for
BS11465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 23..1482 | 17..1476 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:03 Download gff for
BS11465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18358903..18359008 | 17..122 | 100 | -> | Plus |
X | 18359065..18359555 | 123..613 | 100 | -> | Plus |
X | 18359931..18360456 | 614..1139 | 100 | -> | Plus |
X | 18361227..18361563 | 1140..1476 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:44 Download gff for
BS11465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18252936..18253041 | 17..122 | 100 | -> | Plus |
arm_X | 18253098..18253588 | 123..613 | 100 | -> | Plus |
arm_X | 18253964..18254489 | 614..1139 | 100 | -> | Plus |
arm_X | 18255260..18255596 | 1140..1476 | 100 | | Plus |
BS11465.pep Sequence
Translation from 16 to 1476
> BS11465.pep
MDLLFLSRRIFLGDGSQNALIHGGIIVDTEGIIRRVLRSPQEVNTYLYNT
ESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTI
IDRPTNAQPPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNGDQLAALL
GAGVMGLQCTLCDPAAPVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAV
HAELPLTTEIHPDEEAPREYGTFLVTRPPQMEISATQLLCRLANRHPRRC
IHILNCSSGESLPLVEECRRQGGNLTVDTCPHYLALAAEDVPDCGTEFKT
WPPIRERRNQEQLWQALRPGGAIRMIGSDHSPATPGARALTCGRGRGNFL
KAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPANLCGLSA
SKGRIAEGYDADFCVWSPEEEFTVGPELLYTATKATPYAGQKLRGVVHAT
VVRGLHVYQQFEGFGQPLGKVLLRRSSRKLVKFVSM*
BS11465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-PB | 486 | CG6106-PB | 1..486 | 1..486 | 2557 | 100 | Plus |
CG6106-PA | 486 | CG6106-PA | 1..486 | 1..486 | 2557 | 100 | Plus |
CRMP-PA | 589 | CG1411-PA | 66..471 | 57..466 | 221 | 25.3 | Plus |