Clone BS11465 Report

Search the DGRC for BS11465

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG6106-RA
Protein status:BS11465.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11465.3prime Sequence

923 bp (774 high quality bases) assembled on 2006-05-08

> BS11465.3prime
ATGGTCTAGAAAGCTTTCACATGCTCACGAACTTGACCAGTTTTCGACTG
CTCCTCCGAAGCAGCACCTTGCCCAGGGGCTGGCCGAAGCCCTCGAACTG
TTGGTAGACATGCAGGCCCCGCACCACCGTGGCATGCACCACGCCCCGCA
ACTTTTGACCCGCGTACGGGGTGGCCTTCGTGGCCGTGTAGAGCAGCTCC
GGGCCCACGGTGAACTCCTCCTCGGGACTCCACACACAGAAGTCGGCATC
GTAGCCCTCGGCAATGCGGCCCTTCGAGGCGGACAAGCCGCACAGGTTCG
CCGGCTCCTGGCACATCAGACGATGGATGTCCGCGATGGTCAGGTTGGCG
GATCCTCGCCGATTGGCGGCCGCTGTCCAAACGACCGACAGGCTGAGTTG
CAACGAGTTGATGCCCGGCCACGCCTTCAGGAAGTTGCCACGCCCCCTTC
CGCAGGTGAGAGCACGTGCACCCGGCGTCGCCGGCGAGTGATCACTGCCA
ATCATGCGGATGGCTCCGCCCGGTCTCAGAGCCTGCCACAATTGCTCCTG
ATTGCGACGCTCCCGAATCGGTGGCCAGGTCTTGAACTCCGTGCCGCAAT
CGGGCACATCCTCGGCCGCCAGGGCCAGGTAATGCGGACAGGTGTCCACC
GTTAGATTCCCGCCCTGCCGTCGACACTCCTCCACCAGCGGCAGACTTTC
GCCGCTGCTGCAGTTGAGGATGTGTATGCAGCGCCGCGGGTGGCGATTCG
CCAGCCGGCAGAGCAACTGCGTCGCGGAAATCTCCATTTGGGGTGGACGA
GTCACCAGGAAAGTGCCATACTCCCGGGGCGCCTCCTCGTCCGGATGGAT
TTCGGTGGTCAGCGGCAGCTCAGCATGCACCGCTACGATTGCTTCCCCTT
CAGCCTGATCCTTGTNCAACTGG

BS11465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-PA 1461 CG6106-RA 555..1461 923..17 4516 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-RB 2446 CG6106-RB 577..1483 923..17 4524 99.9 Minus
CG6106-RA 1878 CG6106-RA 577..1483 923..17 4524 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18359930..18360457 881..354 2640 100 Minus
X 23542271 X 18361225..18361564 356..17 1700 100 Minus
X 23542271 X 18359513..18359558 923..878 219 97.8 Minus
Blast to na_te.dros performed on 2015-02-01 04:44:30 has no hits.

BS11465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:00 Download gff for BS11465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-PA 555..1461 17..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:49 Download gff for BS11465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-PA 555..1461 17..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:00 Download gff for BS11465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 577..1483 17..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:08 Download gff for BS11465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 577..1483 17..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:08 Download gff for BS11465.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18359513..18359555 881..923 97 -> Minus
X 18359931..18360456 355..880 100 -> Minus
X 18361227..18361564 17..354 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:00 Download gff for BS11465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18255260..18255597 17..354 100   Minus
arm_X 18253546..18253588 881..923 97 -> Minus
arm_X 18253964..18254489 355..880 100 -> Minus

BS11465.5prime Sequence

840 bp (744 high quality bases) assembled on 2006-05-08

> BS11465.5prime
GAAGTTATCAGTCGACATGGATCTGTTGTTTCTCAGCCGGCGAATTTTCC
TGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGTGGAT
ACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTAATAC
CTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGACCTGG
TACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCCGGGT
CGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCGCCGG
TGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCCACCG
TTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAAGATC
TATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGGATCA
GCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACATTGT
GCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGAATCT
CAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAGGGGA
AGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATCCATC
CGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCGTCCA
CCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGAATCG
CCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAAAGTC
TGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCT

BS11465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-PA 1461 CG6106-RA 1..824 17..840 4120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-RB 2446 CG6106-RB 23..846 17..840 4120 100 Plus
CG6106-RA 1878 CG6106-RA 23..846 17..840 4120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18359064..18359558 122..616 2475 100 Plus
X 23542271 X 18359930..18360157 613..840 1140 100 Plus
X 23542271 X 18358903..18359008 17..122 530 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:04:32 has no hits.

BS11465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:01 Download gff for BS11465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-PA 1..824 17..840 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:50 Download gff for BS11465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-PA 1..824 17..840 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:51:26 Download gff for BS11465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 21..846 14..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:45 Download gff for BS11465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 21..846 14..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:45 Download gff for BS11465.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18358901..18359008 14..122 99 -> Plus
X 18359065..18359555 123..613 100 -> Plus
X 18359931..18360157 614..840 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:51:26 Download gff for BS11465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18252934..18253041 14..122 99 -> Plus
arm_X 18253098..18253588 123..613 100 -> Plus
arm_X 18253964..18254190 614..840 100   Plus

BS11465.complete Sequence

1493 bp assembled on 2006-11-01

GenBank Submission: FJ636877

> BS11465.complete
GAAGTTATCAGTCGACATGGATCTGTTGTTTCTCAGCCGGCGAATTTTCC
TGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGTGGAT
ACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTAATAC
CTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGACCTGG
TACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCCGGGT
CGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCGCCGG
TGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCCACCG
TTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAAGATC
TATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGGATCA
GCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACATTGT
GCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGAATCT
CAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAGGGGA
AGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATCCATC
CGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCGTCCA
CCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGAATCG
CCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAAAGTC
TGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCTAACGGTGGAC
ACCTGTCCGCATTACCTGGCCCTGGCGGCCGAGGATGTGCCCGATTGCGG
CACGGAGTTCAAGACCTGGCCACCGATTCGGGAGCGTCGCAATCAGGAGC
AATTGTGGCAGGCTCTGAGACCGGGCGGAGCCATCCGCATGATTGGCAGT
GATCACTCGCCGGCGACGCCGGGTGCACGTGCTCTCACCTGCGGAAGGGG
GCGTGGCAACTTCCTGAAGGCGTGGCCGGGCATCAACTCGTTGCAACTCA
GCCTGTCGGTCGTTTGGACAGCGGCCGCCAATCGGCGAGGATCCGCCAAC
CTGACCATCGCGGACATCCATCGTCTGATGTGCCAGGAGCCGGCGAACCT
GTGCGGCTTGTCCGCCTCGAAGGGCCGCATTGCCGAGGGCTACGATGCCG
ACTTCTGTGTGTGGAGTCCCGAGGAGGAGTTCACCGTGGGCCCGGAGCTG
CTCTACACGGCCACGAAGGCCACCCCGTACGCGGGTCAAAAGTTGCGGGG
CGTGGTGCATGCCACGGTGGTGCGGGGCCTGCATGTCTACCAACAGTTCG
AGGGCTTCGGCCAGCCCCTGGGCAAGGTGCTGCTTCGGAGGAGCAGTCGA
AAACTGGTCAAGTTCGTGAGCATGTGAAAGCTTTCTAGACCAT

BS11465.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-RB 1461 CG6106-PB 1..1461 17..1477 7305 100 Plus
CG6106-RA 1461 CG6106-PA 1..1461 17..1477 7305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-RB 2446 CG6106-RB 23..1483 17..1477 7305 100 Plus
CG6106-RA 1878 CG6106-RA 23..1483 17..1477 7305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18359930..18360457 613..1140 2640 100 Plus
X 23542271 X 18359064..18359558 122..616 2475 100 Plus
X 23542271 X 18361225..18361564 1138..1477 1700 100 Plus
X 23542271 X 18358903..18359008 17..122 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:01:34 has no hits.

BS11465.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:30 Download gff for BS11465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1461 17..1477 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:36 Download gff for BS11465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 19..1481 14..1477 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:44 Download gff for BS11465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 23..1482 17..1476 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:30 Download gff for BS11465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 19..1481 14..1477 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:03 Download gff for BS11465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 23..1482 17..1476 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:03 Download gff for BS11465.complete
Subject Subject Range Query Range Percent Splice Strand
X 18358903..18359008 17..122 100 -> Plus
X 18359065..18359555 123..613 100 -> Plus
X 18359931..18360456 614..1139 100 -> Plus
X 18361227..18361563 1140..1476 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:44 Download gff for BS11465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18252936..18253041 17..122 100 -> Plus
arm_X 18253098..18253588 123..613 100 -> Plus
arm_X 18253964..18254489 614..1139 100 -> Plus
arm_X 18255260..18255596 1140..1476 100   Plus

BS11465.pep Sequence

Translation from 16 to 1476

> BS11465.pep
MDLLFLSRRIFLGDGSQNALIHGGIIVDTEGIIRRVLRSPQEVNTYLYNT
ESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTI
IDRPTNAQPPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNGDQLAALL
GAGVMGLQCTLCDPAAPVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAV
HAELPLTTEIHPDEEAPREYGTFLVTRPPQMEISATQLLCRLANRHPRRC
IHILNCSSGESLPLVEECRRQGGNLTVDTCPHYLALAAEDVPDCGTEFKT
WPPIRERRNQEQLWQALRPGGAIRMIGSDHSPATPGARALTCGRGRGNFL
KAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPANLCGLSA
SKGRIAEGYDADFCVWSPEEEFTVGPELLYTATKATPYAGQKLRGVVHAT
VVRGLHVYQQFEGFGQPLGKVLLRRSSRKLVKFVSM*

BS11465.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-PB 486 CG6106-PB 1..486 1..486 2557 100 Plus
CG6106-PA 486 CG6106-PA 1..486 1..486 2557 100 Plus
CRMP-PA 589 CG1411-PA 66..471 57..466 221 25.3 Plus