Clone Sequence Records
BS11466.3prime Sequence
901 bp (843 high quality bases) assembled on 2006-05-08
> BS11466.3prime
ATGGTCTAGAAAGCTTTTATTTATCCCCCTTGCTACTGTTTGAAGTTTTA
CGCTGTCGGTGCTGCAGAAGCTCCTGGTATTGCTCTATGGATCCGTCTTC
ATGCTTGGAAGTAAATGAATCCGGCTTTTCAACCTTGGCCTGCTCCTCGC
CGGCGGTGACTTTGGTGCGCTTCGATTTCTTGAGCTTGTCACGGACGCGT
TTTCCCAAACGCGATTCGGCCAGCACCTGGCTGACCTTGGAGCTCTTCAT
GTAGCGTGAACGCCAGGACTCGGAGTCTGCCTGCTGTAGTTTGTCGCGTT
CATCCTCGCTTGTGTCCAGGGATATGACATCGTTGTCCAGTTCCTCAGGA
TCCTGCATCTTCTCCTTTTTCTCGCTTTTAATGCTTACCCAAGGTGAATC
GTCATCCTTCGTCATTTCCTCAATCATTTCTAGATCCCCACCTATTGAAA
TGACGTCGTCGTTTTGATCTTCGTCGTCAAGGGCAGTTGGCTCGGCTGCA
CTCGGCTTCTTTGGCTCTGCAGGGGGATTAGCTGGGAGAGCTTCTTCCGA
CGGTGGTTCCTTATCCCCTGTTTTATCTAGCTTATCAGACGTATCCGATA
CTTCTGGCTTATTACTTTCCAGTTCTTTCGAAATAGCTGCTGCTTCTGAC
TCTGTTGGCTCATCTGGATTGGCTGGGTCAACTACCTTAGCTGGCTCTTC
GGGTTCATCGCGCACTTCTCCCTCCTCTGGCTCGCTCTCAACGACTGGGG
CTGGTGGGTCCGATTCGACTTGCTTAGTTGTAGTTGTTTCAGTTGTCTTC
TTTTTGGTGGCCTCATCATCCGTACTGTCGCTGATCAGCAGTGTTTTCGG
GTTCCGTTTGTATAAGTATCACATCTGGGTGAGGCTGAACGTGATTTGGA
A
BS11466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-PA | 1746 | CG32176-RA | 917..1746 | 846..17 | 4150 | 100 | Minus |
CG32176-PA | 1746 | CG32176-RA | 886..919 | 878..845 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-RA | 1928 | CG32176-RA | 933..1815 | 901..17 | 4360 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17436913..17437543 | 901..269 | 3050 | 99.5 | Minus |
3L | 28110227 | 3L | 17437605..17437858 | 270..17 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:54:46 has no hits.
BS11466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:02 Download gff for
BS11466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-PA | 866..1746 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:51 Download gff for
BS11466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-PA | 866..1746 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:23 Download gff for
BS11466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 933..1821 | 6..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:45 Download gff for
BS11466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 933..1821 | 6..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:45 Download gff for
BS11466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17436913..17437543 | 269..901 | 99 | -> | Minus |
3L | 17437607..17437864 | 6..268 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:23 Download gff for
BS11466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17430013..17430643 | 269..901 | 99 | -> | Minus |
arm_3L | 17430707..17430964 | 6..268 | 98 | | Minus |
BS11466.5prime Sequence
935 bp (860 high quality bases) assembled on 2006-05-08
> BS11466.5prime
GAAGTTATCAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTG
GTTTTTATTTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAA
AAATCCAGCAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGA
GAAGATCGAGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACG
ACCGCCTGGAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACC
ATTTTGAACCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAAT
CGAGGAACTTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAA
AATCCATAATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAA
GATTCCGATGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATC
ATCCGACAGCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGC
TTAGATCCAAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGT
CAAATGAGCGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCAT
CCGCTCCCAACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAG
ATGATGATATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAG
GATAAACGCAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGA
ATCAGCTAGACCAACATCTCCATCCCAGCCTGATAGCAGCAGCAAGGAGC
AGGAAGCGCCCCCGCAAAGAATCAAGATCAAAAGAAACTATAGGCGGACT
TCAAAGTCGCCAGAAAAGGAAGTCAAACCTCCCACATCTACTACTTCATC
CGAAACTTTGGTTGCATCTAACGATTTAAACAACT
BS11466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-PA | 1746 | CG32176-RA | 1..733 | 80..812 | 3665 | 100 | Plus |
CG32176-PA | 1746 | CG32176-RA | 737..854 | 816..933 | 565 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-RA | 1928 | CG32176-RA | 8..923 | 18..933 | 4520 | 99.7 | Plus |
CG12229-RA | 1960 | CG12229-RA | 55..108 | 542..489 | 270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17436513..17436903 | 543..933 | 1895 | 99 | Plus |
3L | 28110227 | 3L | 17433875..17434137 | 18..280 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 17434187..17434333 | 279..425 | 735 | 100 | Plus |
3L | 28110227 | 3L | 17434392..17434456 | 424..488 | 325 | 100 | Plus |
3L | 28110227 | 3L | 17436324..17436377 | 489..542 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 04:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 774..850 | 210..289 | 122 | 66.7 | Plus |
BS11466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:03 Download gff for
BS11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-PA | 1..857 | 80..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:52 Download gff for
BS11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-PA | 1..857 | 80..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:35 Download gff for
BS11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 3..926 | 10..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:09 Download gff for
BS11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 3..926 | 10..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:09 Download gff for
BS11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17433870..17434137 | 10..280 | 98 | -> | Plus |
3L | 17434189..17434333 | 281..425 | 100 | -> | Plus |
3L | 17434394..17434456 | 426..488 | 100 | -> | Plus |
3L | 17436324..17436377 | 489..542 | 100 | -> | Plus |
3L | 17436513..17436906 | 543..935 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:35 Download gff for
BS11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17426970..17427237 | 10..280 | 98 | -> | Plus |
arm_3L | 17427289..17427433 | 281..425 | 100 | -> | Plus |
arm_3L | 17427494..17427556 | 426..488 | 100 | -> | Plus |
arm_3L | 17429424..17429477 | 489..542 | 100 | -> | Plus |
arm_3L | 17429613..17430006 | 543..935 | 98 | | Plus |
BS11466.complete Sequence
1841 bp assembled on 2012-04-25
GenBank Submission: KX806094
> BS11466.complete
GAAGTTATCAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTG
GTTTTTATTTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAA
AAATCCAGCAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGA
GAAGATCGAGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACG
ACCGCCTGGAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACC
ATTTTGAACCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAAT
CGAGGAACTTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAA
AATCCATAATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAA
GATTCCGATGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATC
ATCCGACAGCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGC
TTAGATCCAAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGT
CAAATGAGCGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCAT
CCGCTCCCAACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAG
ATGATGATATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAG
GATAAACGCAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGA
ATCAGCTAGACCAACATCTCCATCCCAGCCTGATAGCAGCAGCAAGGAGC
AGGAAGCGCCCCGCAAAAGAATCAAGATCAAAAGAAACTATAGGCGGACT
TCAAAGTCGCCAGAAAAGGAAGTCAAACCTCCAACATCTACTACTTCATC
CGAAACTTTGGTTGCATCTAACGATTTAAACAAACTGCCACGTTCCAAAT
CACGTTCAGCCTCACCAGATGTGATACCTATACAAACGGAACCCGAAACA
CTGCTGATCAGCGACAGTACGGATGATGAGGCCACCAAAAAGAAGACAAC
TGAAACAACTACAACTAAGCAAGTCGAATCGGACCCACCAGCCCCAGTCG
TTGAGAGCGAGCCAGAGGAGGGAGAAGTGCGCGATGAACCCGAAGAGCCA
GCTAAGGTAGTTGACCCAGCCAATCCAGATGAGCCAACAGAGTCAGAAGC
AGCAGCTATTTCGAAAGAACTGGAAAGTAATAAGCCAGAAGTATCGGATA
CGTCTGATAAGCTAGATAAAACAGGGGATAAGGAACCACCGTCGGAAGAA
GCTCTCCCAGCTAATCCCCCTGCAGAGCCAAAGAAGCCGAGTGCAGCCGA
GCCAACTGCCCTTGACGACGAAGATCAAAACGACGACGTCATTTCAATAG
GTGGGGATCTAGAAATGATTGAGGAAATGACGAAGGATGACGATTCACCT
TGGGTAAGCATTAAAAGCGAGAAAAAGGAGAAGATGCAGGATCCTGAGGA
ACTGGACAACGATGTCATATCCCTGGACACAAGCGAGGATGAACGCGACA
AACTACAGCAGGCAGACTCCGAGTCCTGGCGTTCACGCTACATGAAGAGC
TCCAAGGTCAGCCAGGTGCTGGCCGAATCGCGTTTGGGAAAACGCGTCCG
TGACAAGCTCAAGAAATCGAAGCGCACCAAAGTCACCGCCGGCGAGGAGC
AGGCCAAGGTTGAAAAGCCGGATTCATTTACTTCCAAGCATGAAGACGGA
TCCATAGAGCAATACCAGGAGCTTCTGCAGCACCGACAGCGTAAAACTTC
AAACAGTAGCAAGGGGGATAAATAAAAGCTTTCTAGACCAT
BS11466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-RA | 1746 | CG32176-PA | 1..1746 | 80..1825 | 8730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-RA | 1928 | CG32176-RA | 8..1815 | 18..1825 | 9040 | 100 | Plus |
CG12229-RA | 1960 | CG12229-RA | 55..108 | 542..489 | 270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17436513..17437543 | 543..1573 | 5155 | 100 | Plus |
3L | 28110227 | 3L | 17433875..17434137 | 18..280 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 17437605..17437858 | 1572..1825 | 1270 | 100 | Plus |
3L | 28110227 | 3L | 17434187..17434333 | 279..425 | 735 | 100 | Plus |
3L | 28110227 | 3L | 17434392..17434456 | 424..488 | 325 | 100 | Plus |
3L | 28110227 | 3L | 17436324..17436377 | 489..542 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 774..850 | 210..289 | 122 | 66.7 | Plus |
BS11466.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:31 Download gff for
BS11466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 1..1819 | 15..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:04 Download gff for
BS11466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 4..1805 | 17..1817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:51 Download gff for
BS11466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 6..1807 | 17..1817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:51 Download gff for
BS11466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 4..1805 | 17..1817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:11 Download gff for
BS11466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 6..1807 | 17..1817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:11 Download gff for
BS11466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17437607..17437850 | 1574..1817 | 100 | | Plus |
3L | 17433873..17434137 | 17..280 | 99 | -> | Plus |
3L | 17434189..17434333 | 281..425 | 100 | -> | Plus |
3L | 17434394..17434456 | 426..488 | 100 | -> | Plus |
3L | 17436324..17436377 | 489..542 | 100 | -> | Plus |
3L | 17436513..17437543 | 543..1573 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:51 Download gff for
BS11466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17430707..17430950 | 1574..1817 | 100 | | Plus |
arm_3L | 17426973..17427237 | 17..280 | 99 | -> | Plus |
arm_3L | 17427289..17427433 | 281..425 | 100 | -> | Plus |
arm_3L | 17427494..17427556 | 426..488 | 100 | -> | Plus |
arm_3L | 17429424..17429477 | 489..542 | 100 | -> | Plus |
arm_3L | 17429613..17430643 | 543..1573 | 100 | -> | Plus |
BS11466.pep Sequence
Translation from 16 to 1824
> BS11466.pep
MATLPERPKLLGFYFDNKLDKMSGLKAKKSSKGDQIPKPISIKKEKIEEE
RKLHPMSHYIDDRLELVKQIFGTLKPKTILNLAPEFLKKTPLDEIEELCL
EELLCLSTKRLKSIIENTKCPTDTESSEDSDVEHKEEHISLEEISSDSDI
GGQESRKTKKKLRSKKTNNGNENKESGGQMSVLELLELQARARAIRSQLA
MEPITKIEVKSDDDIDEVPVEKVQRKEKDKRSTKKTDSSKRKSQESARPT
SPSQPDSSSKEQEAPRKRIKIKRNYRRTSKSPEKEVKPPTSTTSSETLVA
SNDLNKLPRSKSRSASPDVIPIQTEPETLLISDSTDDEATKKKTTETTTT
KQVESDPPAPVVESEPEEGEVRDEPEEPAKVVDPANPDEPTESEAAAISK
ELESNKPEVSDTSDKLDKTGDKEPPSEEALPANPPAEPKKPSAAEPTALD
DEDQNDDVISIGGDLEMIEEMTKDDDSPWVSIKSEKKEKMQDPEELDNDV
ISLDTSEDERDKLQQADSESWRSRYMKSSKVSQVLAESRLGKRVRDKLKK
SKRTKVTAGEEQAKVEKPDSFTSKHEDGSIEQYQELLQHRQRKTSNSSKG
DK*
BS11466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-PA | 581 | CG32176-PA | 1..581 | 22..602 | 2928 | 100 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3851..4431 | 20..597 | 214 | 21.4 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 3890..4470 | 20..597 | 214 | 21.4 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 3851..4431 | 20..597 | 214 | 21.4 | Plus |
Strn-Mlck-PU | 8255 | CG44162-PU | 3890..4470 | 20..597 | 214 | 21.4 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4566..5144 | 20..585 | 212 | 21.9 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4605..5183 | 20..585 | 212 | 21.9 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 4566..5144 | 20..585 | 212 | 21.9 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4241..4821 | 20..597 | 196 | 20.6 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4280..4860 | 20..597 | 196 | 20.6 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 4241..4821 | 20..597 | 196 | 20.6 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3426..3968 | 52..582 | 194 | 21.7 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 3465..4007 | 52..582 | 194 | 21.7 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 3426..3968 | 52..582 | 194 | 21.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4761..5247 | 20..499 | 161 | 19.5 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4800..5286 | 20..499 | 161 | 19.5 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 4761..5247 | 20..499 | 161 | 19.5 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 2734..3248 | 38..539 | 159 | 22.2 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 2773..3287 | 38..539 | 159 | 22.2 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 2734..3248 | 38..539 | 159 | 22.2 | Plus |