Clone BS11466 Report

Search the DGRC for BS11466

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG32176-RA
Protein status:BS11466.pep: gold
Sequenced Size:1841

Clone Sequence Records

BS11466.3prime Sequence

901 bp (843 high quality bases) assembled on 2006-05-08

> BS11466.3prime
ATGGTCTAGAAAGCTTTTATTTATCCCCCTTGCTACTGTTTGAAGTTTTA
CGCTGTCGGTGCTGCAGAAGCTCCTGGTATTGCTCTATGGATCCGTCTTC
ATGCTTGGAAGTAAATGAATCCGGCTTTTCAACCTTGGCCTGCTCCTCGC
CGGCGGTGACTTTGGTGCGCTTCGATTTCTTGAGCTTGTCACGGACGCGT
TTTCCCAAACGCGATTCGGCCAGCACCTGGCTGACCTTGGAGCTCTTCAT
GTAGCGTGAACGCCAGGACTCGGAGTCTGCCTGCTGTAGTTTGTCGCGTT
CATCCTCGCTTGTGTCCAGGGATATGACATCGTTGTCCAGTTCCTCAGGA
TCCTGCATCTTCTCCTTTTTCTCGCTTTTAATGCTTACCCAAGGTGAATC
GTCATCCTTCGTCATTTCCTCAATCATTTCTAGATCCCCACCTATTGAAA
TGACGTCGTCGTTTTGATCTTCGTCGTCAAGGGCAGTTGGCTCGGCTGCA
CTCGGCTTCTTTGGCTCTGCAGGGGGATTAGCTGGGAGAGCTTCTTCCGA
CGGTGGTTCCTTATCCCCTGTTTTATCTAGCTTATCAGACGTATCCGATA
CTTCTGGCTTATTACTTTCCAGTTCTTTCGAAATAGCTGCTGCTTCTGAC
TCTGTTGGCTCATCTGGATTGGCTGGGTCAACTACCTTAGCTGGCTCTTC
GGGTTCATCGCGCACTTCTCCCTCCTCTGGCTCGCTCTCAACGACTGGGG
CTGGTGGGTCCGATTCGACTTGCTTAGTTGTAGTTGTTTCAGTTGTCTTC
TTTTTGGTGGCCTCATCATCCGTACTGTCGCTGATCAGCAGTGTTTTCGG
GTTCCGTTTGTATAAGTATCACATCTGGGTGAGGCTGAACGTGATTTGGA
A

BS11466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-PA 1746 CG32176-RA 917..1746 846..17 4150 100 Minus
CG32176-PA 1746 CG32176-RA 886..919 878..845 145 97 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-RA 1928 CG32176-RA 933..1815 901..17 4360 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17436913..17437543 901..269 3050 99.5 Minus
3L 28110227 3L 17437605..17437858 270..17 1270 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:54:46 has no hits.

BS11466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:02 Download gff for BS11466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-PA 866..1746 17..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:51 Download gff for BS11466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-PA 866..1746 17..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:23 Download gff for BS11466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 933..1821 6..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:45 Download gff for BS11466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 933..1821 6..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:45 Download gff for BS11466.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17436913..17437543 269..901 99 -> Minus
3L 17437607..17437864 6..268 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:23 Download gff for BS11466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17430013..17430643 269..901 99 -> Minus
arm_3L 17430707..17430964 6..268 98   Minus

BS11466.5prime Sequence

935 bp (860 high quality bases) assembled on 2006-05-08

> BS11466.5prime
GAAGTTATCAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTG
GTTTTTATTTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAA
AAATCCAGCAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGA
GAAGATCGAGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACG
ACCGCCTGGAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACC
ATTTTGAACCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAAT
CGAGGAACTTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAA
AATCCATAATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAA
GATTCCGATGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATC
ATCCGACAGCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGC
TTAGATCCAAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGT
CAAATGAGCGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCAT
CCGCTCCCAACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAG
ATGATGATATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAG
GATAAACGCAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGA
ATCAGCTAGACCAACATCTCCATCCCAGCCTGATAGCAGCAGCAAGGAGC
AGGAAGCGCCCCCGCAAAGAATCAAGATCAAAAGAAACTATAGGCGGACT
TCAAAGTCGCCAGAAAAGGAAGTCAAACCTCCCACATCTACTACTTCATC
CGAAACTTTGGTTGCATCTAACGATTTAAACAACT

BS11466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-PA 1746 CG32176-RA 1..733 80..812 3665 100 Plus
CG32176-PA 1746 CG32176-RA 737..854 816..933 565 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-RA 1928 CG32176-RA 8..923 18..933 4520 99.7 Plus
CG12229-RA 1960 CG12229-RA 55..108 542..489 270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17436513..17436903 543..933 1895 99 Plus
3L 28110227 3L 17433875..17434137 18..280 1315 100 Plus
3L 28110227 3L 17434187..17434333 279..425 735 100 Plus
3L 28110227 3L 17434392..17434456 424..488 325 100 Plus
3L 28110227 3L 17436324..17436377 489..542 270 100 Plus
Blast to na_te.dros performed 2015-02-12 04:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 774..850 210..289 122 66.7 Plus

BS11466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:03 Download gff for BS11466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-PA 1..857 80..935 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:52 Download gff for BS11466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-PA 1..857 80..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:35 Download gff for BS11466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 3..926 10..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:09 Download gff for BS11466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 3..926 10..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:09 Download gff for BS11466.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17433870..17434137 10..280 98 -> Plus
3L 17434189..17434333 281..425 100 -> Plus
3L 17434394..17434456 426..488 100 -> Plus
3L 17436324..17436377 489..542 100 -> Plus
3L 17436513..17436906 543..935 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:35 Download gff for BS11466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17426970..17427237 10..280 98 -> Plus
arm_3L 17427289..17427433 281..425 100 -> Plus
arm_3L 17427494..17427556 426..488 100 -> Plus
arm_3L 17429424..17429477 489..542 100 -> Plus
arm_3L 17429613..17430006 543..935 98   Plus

BS11466.complete Sequence

1841 bp assembled on 2012-04-25

GenBank Submission: KX806094

> BS11466.complete
GAAGTTATCAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTG
GTTTTTATTTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAA
AAATCCAGCAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGA
GAAGATCGAGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACG
ACCGCCTGGAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACC
ATTTTGAACCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAAT
CGAGGAACTTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAA
AATCCATAATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAA
GATTCCGATGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATC
ATCCGACAGCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGC
TTAGATCCAAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGT
CAAATGAGCGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCAT
CCGCTCCCAACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAG
ATGATGATATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAG
GATAAACGCAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGA
ATCAGCTAGACCAACATCTCCATCCCAGCCTGATAGCAGCAGCAAGGAGC
AGGAAGCGCCCCGCAAAAGAATCAAGATCAAAAGAAACTATAGGCGGACT
TCAAAGTCGCCAGAAAAGGAAGTCAAACCTCCAACATCTACTACTTCATC
CGAAACTTTGGTTGCATCTAACGATTTAAACAAACTGCCACGTTCCAAAT
CACGTTCAGCCTCACCAGATGTGATACCTATACAAACGGAACCCGAAACA
CTGCTGATCAGCGACAGTACGGATGATGAGGCCACCAAAAAGAAGACAAC
TGAAACAACTACAACTAAGCAAGTCGAATCGGACCCACCAGCCCCAGTCG
TTGAGAGCGAGCCAGAGGAGGGAGAAGTGCGCGATGAACCCGAAGAGCCA
GCTAAGGTAGTTGACCCAGCCAATCCAGATGAGCCAACAGAGTCAGAAGC
AGCAGCTATTTCGAAAGAACTGGAAAGTAATAAGCCAGAAGTATCGGATA
CGTCTGATAAGCTAGATAAAACAGGGGATAAGGAACCACCGTCGGAAGAA
GCTCTCCCAGCTAATCCCCCTGCAGAGCCAAAGAAGCCGAGTGCAGCCGA
GCCAACTGCCCTTGACGACGAAGATCAAAACGACGACGTCATTTCAATAG
GTGGGGATCTAGAAATGATTGAGGAAATGACGAAGGATGACGATTCACCT
TGGGTAAGCATTAAAAGCGAGAAAAAGGAGAAGATGCAGGATCCTGAGGA
ACTGGACAACGATGTCATATCCCTGGACACAAGCGAGGATGAACGCGACA
AACTACAGCAGGCAGACTCCGAGTCCTGGCGTTCACGCTACATGAAGAGC
TCCAAGGTCAGCCAGGTGCTGGCCGAATCGCGTTTGGGAAAACGCGTCCG
TGACAAGCTCAAGAAATCGAAGCGCACCAAAGTCACCGCCGGCGAGGAGC
AGGCCAAGGTTGAAAAGCCGGATTCATTTACTTCCAAGCATGAAGACGGA
TCCATAGAGCAATACCAGGAGCTTCTGCAGCACCGACAGCGTAAAACTTC
AAACAGTAGCAAGGGGGATAAATAAAAGCTTTCTAGACCAT

BS11466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-RA 1746 CG32176-PA 1..1746 80..1825 8730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-RA 1928 CG32176-RA 8..1815 18..1825 9040 100 Plus
CG12229-RA 1960 CG12229-RA 55..108 542..489 270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17436513..17437543 543..1573 5155 100 Plus
3L 28110227 3L 17433875..17434137 18..280 1315 100 Plus
3L 28110227 3L 17437605..17437858 1572..1825 1270 100 Plus
3L 28110227 3L 17434187..17434333 279..425 735 100 Plus
3L 28110227 3L 17434392..17434456 424..488 325 100 Plus
3L 28110227 3L 17436324..17436377 489..542 270 100 Plus
Blast to na_te.dros performed 2014-11-28 11:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 774..850 210..289 122 66.7 Plus

BS11466.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:31 Download gff for BS11466.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 1..1819 15..1836 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:04 Download gff for BS11466.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 4..1805 17..1817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:51 Download gff for BS11466.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 6..1807 17..1817 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:51 Download gff for BS11466.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 4..1805 17..1817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:11 Download gff for BS11466.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 6..1807 17..1817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:11 Download gff for BS11466.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17437607..17437850 1574..1817 100   Plus
3L 17433873..17434137 17..280 99 -> Plus
3L 17434189..17434333 281..425 100 -> Plus
3L 17434394..17434456 426..488 100 -> Plus
3L 17436324..17436377 489..542 100 -> Plus
3L 17436513..17437543 543..1573 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:51 Download gff for BS11466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17430707..17430950 1574..1817 100   Plus
arm_3L 17426973..17427237 17..280 99 -> Plus
arm_3L 17427289..17427433 281..425 100 -> Plus
arm_3L 17427494..17427556 426..488 100 -> Plus
arm_3L 17429424..17429477 489..542 100 -> Plus
arm_3L 17429613..17430643 543..1573 100 -> Plus

BS11466.pep Sequence

Translation from 16 to 1824

> BS11466.pep
MATLPERPKLLGFYFDNKLDKMSGLKAKKSSKGDQIPKPISIKKEKIEEE
RKLHPMSHYIDDRLELVKQIFGTLKPKTILNLAPEFLKKTPLDEIEELCL
EELLCLSTKRLKSIIENTKCPTDTESSEDSDVEHKEEHISLEEISSDSDI
GGQESRKTKKKLRSKKTNNGNENKESGGQMSVLELLELQARARAIRSQLA
MEPITKIEVKSDDDIDEVPVEKVQRKEKDKRSTKKTDSSKRKSQESARPT
SPSQPDSSSKEQEAPRKRIKIKRNYRRTSKSPEKEVKPPTSTTSSETLVA
SNDLNKLPRSKSRSASPDVIPIQTEPETLLISDSTDDEATKKKTTETTTT
KQVESDPPAPVVESEPEEGEVRDEPEEPAKVVDPANPDEPTESEAAAISK
ELESNKPEVSDTSDKLDKTGDKEPPSEEALPANPPAEPKKPSAAEPTALD
DEDQNDDVISIGGDLEMIEEMTKDDDSPWVSIKSEKKEKMQDPEELDNDV
ISLDTSEDERDKLQQADSESWRSRYMKSSKVSQVLAESRLGKRVRDKLKK
SKRTKVTAGEEQAKVEKPDSFTSKHEDGSIEQYQELLQHRQRKTSNSSKG
DK*

BS11466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-PA 581 CG32176-PA 1..581 22..602 2928 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 3851..4431 20..597 214 21.4 Plus
Strn-Mlck-PV 7944 CG44162-PV 3890..4470 20..597 214 21.4 Plus
Strn-Mlck-PS 8216 CG44162-PS 3851..4431 20..597 214 21.4 Plus
Strn-Mlck-PU 8255 CG44162-PU 3890..4470 20..597 214 21.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 4566..5144 20..585 212 21.9 Plus
Strn-Mlck-PV 7944 CG44162-PV 4605..5183 20..585 212 21.9 Plus
Strn-Mlck-PS 8216 CG44162-PS 4566..5144 20..585 212 21.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4241..4821 20..597 196 20.6 Plus
Strn-Mlck-PV 7944 CG44162-PV 4280..4860 20..597 196 20.6 Plus
Strn-Mlck-PS 8216 CG44162-PS 4241..4821 20..597 196 20.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 3426..3968 52..582 194 21.7 Plus
Strn-Mlck-PV 7944 CG44162-PV 3465..4007 52..582 194 21.7 Plus
Strn-Mlck-PS 8216 CG44162-PS 3426..3968 52..582 194 21.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 4761..5247 20..499 161 19.5 Plus
Strn-Mlck-PV 7944 CG44162-PV 4800..5286 20..499 161 19.5 Plus
Strn-Mlck-PS 8216 CG44162-PS 4761..5247 20..499 161 19.5 Plus
Strn-Mlck-PT 7905 CG44162-PT 2734..3248 38..539 159 22.2 Plus
Strn-Mlck-PV 7944 CG44162-PV 2773..3287 38..539 159 22.2 Plus
Strn-Mlck-PS 8216 CG44162-PS 2734..3248 38..539 159 22.2 Plus