Clone Sequence Records
BS11467.3prime Sequence
570 bp (569 high quality bases) assembled on 2006-05-08
> BS11467.3prime
ATGGTCTAGAAAGCTTTCAGTCCTGTAGCTTCAGGCTCTTAATGTAGTCA
ATGAGTAGCTTGGGGTGCACATGTTTGATCTCCTGAACAGGCACGGCTTC
CCCCCACTTGGATCCCTTCCAGGTGACAATGAAGTAGACCGTGTCACCAA
GCATATAGCTGTACATAACATTCTCAATTGCTTTGCCGCGGACCAGGAGC
GCATCCGTAGGCGGCACGTTCAACGGTTGGGACTCATTGGAATTGCCGCC
ATCGAGATTCCCTGACACGCTGCCACCGTTGGTTGCATCCAGTTCTGCCT
GTTGTACCAACAACTCGACGAGCAGCCGAGCCAGCTCTGCCCGAGCCGAA
TTGTGAACTCCCATGTGCTTTGGAGGCGGCGTCGAACCGGCCTCCTTGGA
TTCATCCTTTGTCGGCTCTTCCTGCACTTCCTCCTGCTGATCGTTCTCCT
TCTGCTGATCGTTCTCCTTCTGCTGATCGTTCTCCTTCTGCTTTTCCTCC
TCCGCGGGGAAACCACCTGTGTTCTTGTTGTTGGGGCTGTTTTCTTTGTC
CGCCATGTCGACTGATAACT
BS11467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14193-PA | 540 | CG14193-RA | 1..540 | 556..17 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-RA | 816 | CG14193-RA | 63..604 | 556..15 | 2710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19190276..19190817 | 556..15 | 2710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:48:10 has no hits.
BS11467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:04 Download gff for
BS11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:54 Download gff for
BS11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:47:37 Download gff for
BS11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..604 | 15..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:36 Download gff for
BS11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..604 | 15..556 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:36 Download gff for
BS11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19190276..19190817 | 15..556 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:47:37 Download gff for
BS11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19084309..19084850 | 15..556 | 100 | | Minus |
BS11467.5prime Sequence
570 bp (569 high quality bases) assembled on 2006-05-08
> BS11467.5prime
GAAGTTATCAGTCGACATGGCGGACAAAGAAAACAGCCCCAACAACAAGA
ACACAGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAG
CAGAAGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCA
GGAAGAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTC
CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTG
CTCGTCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGG
CAGCGTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGT
TGAACGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAG
AATGTTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCAC
CTGGAAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAAC
ATGTGCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAG
GACTGAAAGCTTTCTAGACC
BS11467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14193-PA | 540 | CG14193-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-RA | 816 | CG14193-RA | 63..604 | 17..558 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19190276..19190817 | 17..558 | 2710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:14:39 has no hits.
BS11467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:05 Download gff for
BS11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:56 Download gff for
BS11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:18 Download gff for
BS11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..604 | 17..558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:33 Download gff for
BS11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..604 | 17..558 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:33 Download gff for
BS11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19190276..19190817 | 17..558 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:18 Download gff for
BS11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19084309..19084850 | 17..558 | 100 | | Plus |
BS11467.complete Sequence
572 bp assembled on 2006-11-01
GenBank Submission: FJ636878
> BS11467.complete
GAAGTTATCAGTCGACATGGCGGACAAAGAAAACAGCCCCAACAACAAGA
ACACAGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAG
CAGAAGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCA
GGAAGAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTC
CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTG
CTCGTCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGG
CAGCGTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGT
TGAACGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAG
AATGTTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCAC
CTGGAAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAAC
ATGTGCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAG
GACTGAAAGCTTTCTAGACCAT
BS11467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-RA | 540 | CG14193-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-RA | 816 | CG14193-RA | 63..604 | 17..558 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19190276..19190817 | 17..558 | 2710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:58:35 has no hits.
BS11467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:31 Download gff for
BS11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:18 Download gff for
BS11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 63..604 | 17..558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:51 Download gff for
BS11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..601 | 17..555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:31 Download gff for
BS11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 63..604 | 17..558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:11 Download gff for
BS11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..601 | 17..555 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:11 Download gff for
BS11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19190276..19190814 | 17..555 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:51 Download gff for
BS11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19084309..19084847 | 17..555 | 100 | | Plus |
BS11467.pep Sequence
Translation from 16 to 555
> BS11467.pep
MADKENSPNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTK
DESKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSGN
LDGGNSNESQPLNVPPTDALLVRGKAIENVMYSYMLGDTVYFIVTWKGSK
WGEAVPVQEIKHVHPKLLIDYIKSLKLQD*
BS11467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-PA | 179 | CG14193-PA | 1..179 | 1..179 | 934 | 100 | Plus |