Clone BS11467 Report

Search the DGRC for BS11467

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptHP1D3csd-RA
Protein status:BS11467.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11467.3prime Sequence

570 bp (569 high quality bases) assembled on 2006-05-08

> BS11467.3prime
ATGGTCTAGAAAGCTTTCAGTCCTGTAGCTTCAGGCTCTTAATGTAGTCA
ATGAGTAGCTTGGGGTGCACATGTTTGATCTCCTGAACAGGCACGGCTTC
CCCCCACTTGGATCCCTTCCAGGTGACAATGAAGTAGACCGTGTCACCAA
GCATATAGCTGTACATAACATTCTCAATTGCTTTGCCGCGGACCAGGAGC
GCATCCGTAGGCGGCACGTTCAACGGTTGGGACTCATTGGAATTGCCGCC
ATCGAGATTCCCTGACACGCTGCCACCGTTGGTTGCATCCAGTTCTGCCT
GTTGTACCAACAACTCGACGAGCAGCCGAGCCAGCTCTGCCCGAGCCGAA
TTGTGAACTCCCATGTGCTTTGGAGGCGGCGTCGAACCGGCCTCCTTGGA
TTCATCCTTTGTCGGCTCTTCCTGCACTTCCTCCTGCTGATCGTTCTCCT
TCTGCTGATCGTTCTCCTTCTGCTGATCGTTCTCCTTCTGCTTTTCCTCC
TCCGCGGGGAAACCACCTGTGTTCTTGTTGTTGGGGCTGTTTTCTTTGTC
CGCCATGTCGACTGATAACT

BS11467.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14193-PA 540 CG14193-RA 1..540 556..17 2700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-RA 816 CG14193-RA 63..604 556..15 2710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19190276..19190817 556..15 2710 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:48:10 has no hits.

BS11467.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:04 Download gff for BS11467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14193-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:54 Download gff for BS11467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14193-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:47:37 Download gff for BS11467.3prime
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..604 15..556 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:36 Download gff for BS11467.3prime
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..604 15..556 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:36 Download gff for BS11467.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19190276..19190817 15..556 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:47:37 Download gff for BS11467.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19084309..19084850 15..556 100   Minus

BS11467.5prime Sequence

570 bp (569 high quality bases) assembled on 2006-05-08

> BS11467.5prime
GAAGTTATCAGTCGACATGGCGGACAAAGAAAACAGCCCCAACAACAAGA
ACACAGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAG
CAGAAGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCA
GGAAGAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTC
CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTG
CTCGTCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGG
CAGCGTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGT
TGAACGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAG
AATGTTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCAC
CTGGAAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAAC
ATGTGCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAG
GACTGAAAGCTTTCTAGACC

BS11467.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14193-PA 540 CG14193-RA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-RA 816 CG14193-RA 63..604 17..558 2710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19190276..19190817 17..558 2710 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:14:39 has no hits.

BS11467.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:05 Download gff for BS11467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14193-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:40:56 Download gff for BS11467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14193-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:18 Download gff for BS11467.5prime
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..604 17..558 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:33 Download gff for BS11467.5prime
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..604 17..558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:33 Download gff for BS11467.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19190276..19190817 17..558 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:18 Download gff for BS11467.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19084309..19084850 17..558 100   Plus

BS11467.complete Sequence

572 bp assembled on 2006-11-01

GenBank Submission: FJ636878

> BS11467.complete
GAAGTTATCAGTCGACATGGCGGACAAAGAAAACAGCCCCAACAACAAGA
ACACAGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAG
CAGAAGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCA
GGAAGAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTC
CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTG
CTCGTCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGG
CAGCGTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGT
TGAACGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAG
AATGTTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCAC
CTGGAAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAAC
ATGTGCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAG
GACTGAAAGCTTTCTAGACCAT

BS11467.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-RA 540 CG14193-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-RA 816 CG14193-RA 63..604 17..558 2710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19190276..19190817 17..558 2710 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:58:35 has no hits.

BS11467.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:31 Download gff for BS11467.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:18 Download gff for BS11467.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 63..604 17..558 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:51 Download gff for BS11467.complete
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..601 17..555 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:31 Download gff for BS11467.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 63..604 17..558 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:11 Download gff for BS11467.complete
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..601 17..555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:11 Download gff for BS11467.complete
Subject Subject Range Query Range Percent Splice Strand
X 19190276..19190814 17..555 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:51 Download gff for BS11467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19084309..19084847 17..555 100   Plus

BS11467.pep Sequence

Translation from 16 to 555

> BS11467.pep
MADKENSPNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTK
DESKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSGN
LDGGNSNESQPLNVPPTDALLVRGKAIENVMYSYMLGDTVYFIVTWKGSK
WGEAVPVQEIKHVHPKLLIDYIKSLKLQD*

BS11467.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-PA 179 CG14193-PA 1..179 1..179 934 100 Plus