Clone Sequence Records
BS11469.3prime Sequence
915 bp (803 high quality bases) assembled on 2006-05-08
> BS11469.3prime
ATGGTCTAGAAAGCTTCTATTCATCCAAAACGGAATCCAGCCATTCCTCC
ACACCGTTTTTGCTTGCTGCCGATGAGGGTGTGGCCGGCTGCACCATAGG
CATTGGCATCGTAATGGTTCCAGAGCCTATATCCAGTTGCGTATCGGTCA
TGGCCAATAGCTCGTCAAGTTCATCAGGTTCAGCTGCTGAGGCAGCAATT
GGTTTTTCCGCCGCTGCAGGGGCAACGTCCTTATTGGACTTAGCAGAGGG
AGCTCGCGACTTGGCGCCCCCATTGGCGTCCTTCAGAATGCACTGCTGGT
AAACTGCCTCAGCCCGTTCGGCGGCCTTCTCTTGGGCGGCAATCTGAGCG
CGGGTGAACAAAGACGCCGGATAATCCATACGCTTGTATAACGGAATCGT
TTGCAGACCCACATTTAGGCGGGTGAGGTTCAGGGTGAAGTAAGCACTGG
CAGCCTTGGTGTGTAGCTTGGTCTGGCCCTCGGCCACGTTGGCCCATTCG
CGCTCTGACCCAAAGGTGAAGTGGCCGCCACCGAGGCTGGGAAACTGGGC
CAGCTGCTGGAAATCGCCAGCTCGTAACTGGGCACGGGCATTCTCATCGA
TGGGTGCACCATCCAGGCCCAATTGCTCCACATCGTCGGTGTCGCTGGGC
AGGGTGTCCAGCATGTCCCTGTTCCGTTGCGGTGCCAACGATGAGCGGCC
TGCTCCACTGGACTGCCAATTGCCACGCCTGGCCAACCTTGGCTCATCGC
TCGAGTCCGCCACATCAACCATGCTGCGACGGGAGGTGGGTGGTGGCGAT
CCCGACGATGTGGTGGAGCGCCCTTGATCCTTTTTATGGTGATGATTGTA
CTGCTTCATGTTCCTGCGCTTTTCCTTGGATCGATCGTCCCTGCCGGACA
TGTCGACTGATAACT
BS11469.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15727-PA | 885 | CG15727-RA | 1..885 | 901..17 | 4400 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aven-RB | 1207 | CG15727-RB | 138..1022 | 901..17 | 4410 | 99.9 | Minus |
| Aven-RA | 1165 | CG15727-RA | 96..980 | 901..17 | 4410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12628555..12629410 | 17..872 | 4280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:44:45 has no hits.
BS11469.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:09 Download gff for
BS11469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15727-PA | 1..885 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:01 Download gff for
BS11469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15727-PA | 1..885 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:51:24 Download gff for
BS11469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 89..980 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:40 Download gff for
BS11469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 89..980 | 17..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:40 Download gff for
BS11469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12628555..12629410 | 17..872 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:51:24 Download gff for
BS11469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12522588..12523443 | 17..872 | 100 | <- | Plus |
BS11469.5prime Sequence
891 bp (851 high quality bases) assembled on 2006-05-08
> BS11469.5prime
GAAGTTATCAGTCGACATGTCCGGCAAGGACGATCGATCCAAGGAAAAGC
GCAGGAACATGAAGCAGTACAATCATCACCATAAAAAGGATCAAGGGCGC
TCCACCACATCGTCGGGATCGCCACCACCCACCTCCCGTCGCAGCATGGT
TGATGTGGCGGACTCGAGCGATGAGCCAAGGTTGGCCAGGCGTGGCAATT
GGCAGTCCAGTGGAGCAGGCCGCTCATCGTTGGCACCGCAACGGAACAGG
GACATGCTGGACACCCTGCCCAGCGACACCGACGATGTGGAGCAATTGGG
CCTGGATGGTGCACCCATCGATGAGAATGCCCGTGCCCAGTTACGAGCTG
GCGATTTCCAGCAGCTGGCCCAGTTTCCCAGCCTCGGTGGCGGCCACTTC
ACCTTTGGGTCAGAGCGCGAATGGGCCAACGTGGCCGAGGGCCAGACCAA
GCTACACACCAAGGCTGCCAGTGCTTACTTCACCCTGAACCTCACCCGCC
TAAATGTGGGTCTGCAAACGATTCCGTTATACAAGCGTATGGATTATCCG
GCGTCTTTGTTCACCCGCGCTCAGATTGCCGCCCAAGAGAAGGCCGCCGA
ACGGGCTGAGGCAGTTTACCAGCAGTGCATTCTGAAGGACGCCAATGGGG
GCGCCAAGTCGCGAGCTCCCTCTGCTAAGTCCAATAAGGACGTTGCCCCT
GCAGCGGCGGAAAAACCAATTGCTGCCTCAGCAGCTGAACCTGATGAACT
TGACGAGCTATTGGCCATGACCGATACGCAACTGGATATAGGCTCTGGAA
CCATTACGATGCCAATGCCTATGGTGCAGCCGGCCACACCCTCATCGGCA
GCAAGCAAAACGGTGTGGAGGAATGGCTGGATTCCGTTTGG
BS11469.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15727-PA | 885 | CG15727-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
| CG15727-PA | 885 | CG15727-RA | 842..874 | 857..889 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aven-RB | 1207 | CG15727-RB | 138..1011 | 17..889 | 4345 | 99.9 | Plus |
| Aven-RA | 1165 | CG15727-RA | 96..969 | 17..889 | 4345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12628566..12629410 | 889..46 | 4175 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 00:31:21 has no hits.
BS11469.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:10 Download gff for
BS11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15727-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:02 Download gff for
BS11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15727-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:15 Download gff for
BS11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 89..971 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:35 Download gff for
BS11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 89..971 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:35 Download gff for
BS11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12628563..12629410 | 46..891 | 99 | <- | Minus |
| X | 12629475..12629510 | 9..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:15 Download gff for
BS11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12522596..12523443 | 46..891 | 99 | <- | Minus |
| arm_X | 12523508..12523543 | 9..45 | 91 | | Minus |
BS11469.complete Sequence
917 bp assembled on 2006-11-01
GenBank Submission: FJ636879
> BS11469.complete
GAAGTTATCAGTCGACATGTCCGGCAAGGACGATCGATCCAAGGAAAAGC
GCAGGAACATGAAGCAGTACAATCATCACCATAAAAAGGATCAAGGGCGC
TCCACCACATCGTCGGGATCGCCACCACCCACCTCCCGTCGCAGCATGGT
TGATGTGGCGGACTCGAGCGATGAGCCAAGGTTGGCCAGGCGTGGCAATT
GGCAGTCCAGTGGAGCAGGCCGCTCATCGTTGGCACCGCAACGGAACAGG
GACATGCTGGACACCCTGCCCAGCGACACCGACGATGTGGAGCAATTGGG
CCTGGATGGTGCACCCATCGATGAGAATGCCCGTGCCCAGTTACGAGCTG
GCGATTTCCAGCAGCTGGCCCAGTTTCCCAGCCTCGGTGGCGGCCACTTC
ACCTTTGGGTCAGAGCGCGAATGGGCCAACGTGGCCGAGGGCCAGACCAA
GCTACACACCAAGGCTGCCAGTGCTTACTTCACCCTGAACCTCACCCGCC
TAAATGTGGGTCTGCAAACGATTCCGTTATACAAGCGTATGGATTATCCG
GCGTCTTTGTTCACCCGCGCTCAGATTGCCGCCCAAGAGAAGGCCGCCGA
ACGGGCTGAGGCAGTTTACCAGCAGTGCATTCTGAAGGACGCCAATGGGG
GCGCCAAGTCGCGAGCTCCCTCTGCTAAGTCCAATAAGGACGTTGCCCCT
GCAGCGGCGGAAAAACCAATTGCTGCCTCAGCAGCTGAACCTGATGAACT
TGACGAGCTATTGGCCATGACCGATACGCAACTGGATATAGGCTCTGGAA
CCATTACGATGCCAATGCCTATGGTGCAGCCGGCCACACCCTCATCGGCA
GCAAGCAAAAACGGTGTGGAGGAATGGCTGGATTCCGTTTTGGATGAATA
GAAGCTTTCTAGACCAT
BS11469.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aven-RB | 885 | CG15727-PB | 1..885 | 17..901 | 4425 | 100 | Plus |
| Aven-RA | 885 | CG15727-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aven-RB | 1207 | CG15727-RB | 138..1022 | 17..901 | 4425 | 100 | Plus |
| Aven-RA | 1165 | CG15727-RA | 96..980 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12628555..12629410 | 901..46 | 4280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:26:08 has no hits.
BS11469.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:32 Download gff for
BS11469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15727-RA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:37 Download gff for
BS11469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15727-RA | 89..980 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:43 Download gff for
BS11469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 96..980 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:32 Download gff for
BS11469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15727-RA | 89..980 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:21 Download gff for
BS11469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 96..980 | 17..901 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:21 Download gff for
BS11469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12628555..12629410 | 46..901 | 100 | <- | Minus |
| X | 12629475..12629503 | 17..45 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:43 Download gff for
BS11469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12522588..12523443 | 46..901 | 100 | <- | Minus |
| arm_X | 12523508..12523536 | 17..45 | 100 | | Minus |
BS11469.pep Sequence
Translation from 16 to 900
> BS11469.pep
MSGKDDRSKEKRRNMKQYNHHHKKDQGRSTTSSGSPPPTSRRSMVDVADS
SDEPRLARRGNWQSSGAGRSSLAPQRNRDMLDTLPSDTDDVEQLGLDGAP
IDENARAQLRAGDFQQLAQFPSLGGGHFTFGSEREWANVAEGQTKLHTKA
ASAYFTLNLTRLNVGLQTIPLYKRMDYPASLFTRAQIAAQEKAAERAEAV
YQQCILKDANGGAKSRAPSAKSNKDVAPAAAEKPIAASAAEPDELDELLA
MTDTQLDIGSGTITMPMPMVQPATPSSAASKNGVEEWLDSVLDE*
BS11469.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aven-PB | 294 | CG15727-PB | 1..294 | 1..294 | 1507 | 100 | Plus |
| Aven-PA | 294 | CG15727-PA | 1..294 | 1..294 | 1507 | 100 | Plus |
