Clone BS11470 Report

Search the DGRC for BS11470

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG6726-RA
Protein status:BS11470.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11470.3prime Sequence

890 bp (814 high quality bases) assembled on 2006-05-08

> BS11470.3prime
ATGGTCTAGAAAGCTTCTAAGCATCAGCTACGGCAGGAATGAGCTTCTTG
TAAACCTCAATGCCGTGCAAATAGGTATCGGCTTTCAGGAATTCATCGTG
GTCGTGCAGCAGGATGGGGGTGTTGTTAATGGGCGAGAATCCTAGAGCTG
GAATGCCTGCGTAGCGAATATAACGACTGTCCGTGGCGCCGGGGAAAACA
CGAACCCGTGTCTTGAGGCCAAGGTCATCGAGTGCTTTCTTAAAGGCCAG
CCAGTAGGCATTCGACGAGTCAATCTTTGTTGGCTCCACAAAGGGGTTTT
TCATCTCAAACTCCAGTTCAATGCCGCCGCCAGCCTCCTCGCACCAGTCG
CGAATCTGCTTCTCAAAGGCAGGGATATCCACGGTGACGGCAATGCGGAT
ATCAAATACAGCTTCCAGCAATGGGGGAACCACGTTGCTCTGGACTCCGC
CCCTCAGTTGGGTGAGATTCACAGTGGTCACATCACCAATTTCGAGGGAT
GAGTCGTCAGCTAGTTTTTGCACTTGCGATTTGCGGAACTCCATCATTTT
GCCTACCACATAGTTCAGCTTCTCGCCAGCAGTATTCGGGAGCAACAGTG
ATCCGTGACCAGCAGTTCCGCTGATCTTGAAACGAAGATGCCAAAGAGTC
CGTTCAGCGTAGTACAGAGCGTAGGTTTCATCCGCACTAGAGATTCCCTC
GTCGAAACTGAATCCCACATTGAGCTTCTTGAAGTAGTCGCTCTTTACCA
GCTCCCGCATGCCCAGGTGGCCGCCAACCTCCTCGTCCGGAACATAAGTG
AGATAGATCGTCCTCTTGGGTTGATAGCCACTGGCCTTGAGGGCACGCAC
AGCTCCCAGATATTGGGTGCCCACGCACTTCATGTCCTGC

BS11470.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6726-PB 1206 CG6726-RB 333..1206 890..17 4370 100 Minus
CG6726-PA 1206 CG6726-RA 333..1206 890..17 4370 100 Minus
CG6733-PA 1206 CG6733-RA 852..906 371..317 150 90.9 Minus
CG6738-PA 1206 CG6738-RA 739..797 484..426 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RC 2911 CG17110-RC 374..1247 890..17 4370 100 Minus
CG6726-RC 2911 CG6726-RC 374..1247 890..17 4370 100 Minus
CG6726-RA 1473 CG6726-RA 427..1300 890..17 4370 100 Minus
CG17110-RC 2911 CG17110-RC 1912..2759 889..39 560 71.9 Minus
CG6726-RC 2911 CG6726-RC 1912..2759 889..39 560 71.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23092601..23093018 639..222 2090 100 Minus
3R 32079331 3R 23092297..23092547 890..640 1255 100 Minus
3R 32079331 3R 23093082..23093286 221..17 1025 100 Minus
3R 32079331 3R 23098473..23098780 624..317 445 76.3 Minus
3R 32079331 3R 23096447..23096750 624..321 365 74.7 Minus
3R 32079331 3R 10676275..10676370 537..632 240 83.3 Plus
3R 32079331 3R 23100419..23100585 484..318 235 76 Minus
3R 32079331 3R 23094532..23094678 487..341 225 76.9 Minus
3R 32079331 3R 23094072..23094283 889..678 220 73.6 Minus
3R 32079331 3R 23094917..23095032 154..39 220 79.3 Minus
Blast to na_te.dros performed on 2015-02-02 20:38:21 has no hits.

BS11470.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:11 Download gff for BS11470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-PB 333..1206 17..890 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:04 Download gff for BS11470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-PA 333..1206 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:38 Download gff for BS11470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-RB 374..1247 17..890 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:04 Download gff for BS11470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 427..1300 17..890 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:04 Download gff for BS11470.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23092297..23092547 640..890 100 -> Minus
3R 23092601..23093018 222..639 100 -> Minus
3R 23093082..23093286 17..221 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:38 Download gff for BS11470.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18918019..18918269 640..890 100 -> Minus
arm_3R 18918323..18918740 222..639 100 -> Minus
arm_3R 18918804..18919008 17..221 100   Minus

BS11470.5prime Sequence

908 bp (873 high quality bases) assembled on 2006-05-08

> BS11470.5prime
GAAGTTATCAGTCGACATGAGTACAGCCAAGTGGGAGAACAACGAGGAGA
TTAAGATCTTTCGCGAATATCTTCGCATACCAACGGTGCATCCAAATGTG
GATTACACCGTTTGCACGGAATTCTTGAAACGCCAGGCTGCCAGCTTGGA
CCTGCCCGTGGAGGTTATCTATCCGGTGAACGAGCAGAATCCCGTGGTGG
TGCTAAAATGGCAGGGTTCCCAGCCGGAACTGCCCTCCATCATTCTCAAT
TCGCACACGGATGTAGTGCCCGTTTTTGAGGAGAAGTGGACACACGGTCC
ATTCAGCGCGGATCTAGATGCAGAGGGTCGCATCTTTGCGCGCGGATCGC
AGGACATGAAGTGCGTGGGCACCCAATATCTGGGAGCTGTGCGTGCCCTC
AAGGCCAGTGGCTATCAACCCAAGAGGACGATCTATCTCACTTATGTTCC
GGACGAGGAGGTTGGCGGCCACCTGGGCATGCGGGAGCTGGTAAAGAGCG
ACTACTTCAAGAAGCTCAATGTGGGATTCAGTTTCGACGAGGGAATCTCT
AGTGCGGATGAAACCTACGCTCTGTACTACGCTGAACGGACTCTTTGGCA
TCTTCGTTTCAAGATCAGCGGAACTGCTGGTCACGGATCACTGTTGCTCC
CGAATACTGCTGGCGAGAAGCTGAACTATGTGGTAGGCAAAATGATGGAG
TTCCGCAAATCGCAAGTGCAAAAACTAGCTGACGACTCATCCCTCGAAAT
TGGTGATGTGACCACTGTGAATCTCACCCAACTGAGGGGCGGAGTCCAGA
GCAACGTGGTTCCCCCATTGCTGGAAGCTGTATTTGATATCCGCATTGCC
GTCACCGTGGATATCCCTGCCTTTGAGAAGCAGATTCGCGACTGGTGCGA
GGAGGCTG

BS11470.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6726-PB 1206 CG6726-RB 1..892 17..908 4460 100 Plus
CG6726-PA 1206 CG6726-RA 1..892 17..908 4460 100 Plus
CG6733-PA 1206 CG6733-RA 852..890 868..906 145 94.8 Plus
CG6738-PA 1206 CG6738-RA 739..797 755..813 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RC 2911 CG17110-RC 42..933 17..908 4460 100 Plus
CG6726-RC 2911 CG6726-RC 42..933 17..908 4460 100 Plus
CG6726-RA 1473 CG6726-RA 95..986 17..908 4460 100 Plus
CG17110-RC 2911 CG17110-RC 1899..2460 337..898 415 72.3 Plus
CG6726-RC 2911 CG6726-RC 1899..2460 337..898 415 72.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23092056..23092547 108..599 2460 100 Plus
3R 32079331 3R 23092601..23092909 600..908 1545 100 Plus
3R 32079331 3R 23091871..23091961 17..107 455 100 Plus
3R 32079331 3R 23098473..23098764 615..906 410 76 Plus
3R 32079331 3R 23095893..23096315 118..543 385 73.2 Plus
3R 32079331 3R 23096447..23096738 615..906 335 74.3 Plus
3R 32079331 3R 23098035..23098330 236..531 325 74 Plus
3R 32079331 3R 10676275..10676370 702..607 240 83.3 Minus
3R 32079331 3R 23095745..23095823 29..107 230 86.1 Plus
3R 32079331 3R 23094532..23094678 752..898 225 76.9 Plus
3R 32079331 3R 23094059..23094283 337..561 225 73.3 Plus
3R 32079331 3R 23099842..23100080 231..469 205 72.4 Plus
3R 32079331 3R 23100419..23100477 755..813 205 89.8 Plus
3R 32079331 3R 23097771..23097841 29..99 190 84.5 Plus
Blast to na_te.dros performed on 2015-02-12 06:33:26 has no hits.

BS11470.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:12 Download gff for BS11470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-PB 1..892 17..908 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:05 Download gff for BS11470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:32 Download gff for BS11470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-RB 34..933 10..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:04 Download gff for BS11470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 81..986 5..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:04 Download gff for BS11470.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23091857..23091961 5..107 95 -> Plus
3R 23092056..23092547 108..599 100 -> Plus
3R 23092601..23092909 600..908 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:32 Download gff for BS11470.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18917579..18917683 5..107 95 -> Plus
arm_3R 18917778..18918269 108..599 100 -> Plus
arm_3R 18918323..18918631 600..908 100   Plus

BS11470.complete Sequence

1238 bp assembled on 2006-11-01

GenBank Submission: FJ636880

> BS11470.complete
GAAGTTATCAGTCGACATGAGTACAGCCAAGTGGGAGAACAACGAGGAGA
TTAAGATCTTTCGCGAATATCTTCGCATACCAACGGTGCATCCAAATGTG
GATTACACCGTTTGCACGGAATTCTTGAAACGCCAGGCTGCCAGCTTGGA
CCTGCCCGTGGAGGTTATCTATCCGGTGAACGAGCAGAATCCCGTGGTGG
TGCTAAAATGGCAGGGTTCCCAGCCGGAACTGCCCTCCATCATTCTCAAT
TCGCACACGGATGTAGTGCCCGTTTTTGAGGAGAAGTGGACACACGGTCC
ATTCAGCGCGGATCTAGATGCAGAGGGTCGCATCTTTGCGCGCGGATCGC
AGGACATGAAGTGCGTGGGCACCCAATATCTGGGAGCTGTGCGTGCCCTC
AAGGCCAGTGGCTATCAACCCAAGAGGACGATCTATCTCACTTATGTTCC
GGACGAGGAGGTTGGCGGCCACCTGGGCATGCGGGAGCTGGTAAAGAGCG
ACTACTTCAAGAAGCTCAATGTGGGATTCAGTTTCGACGAGGGAATCTCT
AGTGCGGATGAAACCTACGCTCTGTACTACGCTGAACGGACTCTTTGGCA
TCTTCGTTTCAAGATCAGCGGAACTGCTGGTCACGGATCACTGTTGCTCC
CGAATACTGCTGGCGAGAAGCTGAACTATGTGGTAGGCAAAATGATGGAG
TTCCGCAAATCGCAAGTGCAAAAACTAGCTGACGACTCATCCCTCGAAAT
TGGTGATGTGACCACTGTGAATCTCACCCAACTGAGGGGCGGAGTCCAGA
GCAACGTGGTTCCCCCATTGCTGGAAGCTGTATTTGATATCCGCATTGCC
GTCACCGTGGATATCCCTGCCTTTGAGAAGCAGATTCGCGACTGGTGCGA
GGAGGCTGGCGGCGGCATTGAACTGGAGTTTGAGATGAAAAACCCCTTTG
TGGAGCCAACAAAGATTGACTCGTCGAATGCCTACTGGCTGGCCTTTAAG
AAAGCACTCGATGACCTTGGCCTCAAGACACGGGTTCGTGTTTTCCCCGG
CGCCACGGACAGTCGTTATATTCGCTACGCAGGCATTCCAGCTCTAGGAT
TCTCGCCCATTAACAACACCCCCATCCTGCTGCACGACCACGATGAATTC
CTGAAAGCCGATACCTATTTGCACGGCATTGAGGTTTACAAGAAGCTCAT
TCCTGCCGTAGCTGATGCTTAGAAGCTTTCTAGACCAT

BS11470.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6726-RC 1206 CG6726-PC 1..1206 17..1222 6030 100 Plus
CG6726-RA 1206 CG6726-PA 1..1206 17..1222 6030 100 Plus
CG6726-RB 1206 CG6726-PB 1..1206 17..1222 6030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RC 2911 CG17110-RC 42..1247 17..1222 6030 100 Plus
CG6726-RC 2911 CG6726-RC 42..1247 17..1222 6030 100 Plus
CG6726-RA 1473 CG6726-RA 95..1300 17..1222 6030 100 Plus
CG17110-RC 2911 CG17110-RC 1899..2759 337..1200 535 71.1 Plus
CG6726-RC 2911 CG6726-RC 1899..2759 337..1200 535 71.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23092056..23092547 108..599 2460 100 Plus
3R 32079331 3R 23092601..23093018 600..1017 2090 100 Plus
3R 32079331 3R 23093082..23093286 1018..1222 1025 100 Plus
3R 32079331 3R 23091871..23091961 17..107 455 100 Plus
3R 32079331 3R 23098473..23098780 615..922 445 76.3 Plus
3R 32079331 3R 23095893..23096315 118..543 385 73.2 Plus
3R 32079331 3R 23096447..23096750 615..918 365 74.7 Plus
3R 32079331 3R 23098035..23098330 236..531 325 74 Plus
3R 32079331 3R 10676275..10676370 702..607 240 83.3 Minus
3R 32079331 3R 23100419..23100585 755..921 235 76 Plus
3R 32079331 3R 23095745..23095823 29..107 230 86.1 Plus
3R 32079331 3R 23094059..23094283 337..561 225 73.3 Plus
3R 32079331 3R 23094532..23094678 752..898 225 76.9 Plus
3R 32079331 3R 23094917..23095032 1085..1200 220 79.3 Plus
3R 32079331 3R 23099842..23100080 231..469 205 72.4 Plus
3R 32079331 3R 23097771..23097841 29..99 190 84.5 Plus
Blast to na_te.dros performed on 2014-11-27 15:40:26 has no hits.

BS11470.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:33 Download gff for BS11470.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 1..1206 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:39 Download gff for BS11470.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RB 31..1244 10..1222 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:29 Download gff for BS11470.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RB 42..1247 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:34 Download gff for BS11470.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 81..1300 5..1222 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:33 Download gff for BS11470.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 95..1300 17..1222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:33 Download gff for BS11470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23091871..23091961 17..107 100 -> Plus
3R 23092056..23092547 108..599 100 -> Plus
3R 23092601..23093018 600..1017 100 -> Plus
3R 23093082..23093286 1018..1222 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:29 Download gff for BS11470.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18917593..18917683 17..107 100 -> Plus
arm_3R 18917778..18918269 108..599 100 -> Plus
arm_3R 18918323..18918740 600..1017 100 -> Plus
arm_3R 18918804..18919008 1018..1222 100   Plus

BS11470.pep Sequence

Translation from 16 to 1221

> BS11470.pep
MSTAKWENNEEIKIFREYLRIPTVHPNVDYTVCTEFLKRQAASLDLPVEV
IYPVNEQNPVVVLKWQGSQPELPSIILNSHTDVVPVFEEKWTHGPFSADL
DAEGRIFARGSQDMKCVGTQYLGAVRALKASGYQPKRTIYLTYVPDEEVG
GHLGMRELVKSDYFKKLNVGFSFDEGISSADETYALYYAERTLWHLRFKI
SGTAGHGSLLLPNTAGEKLNYVVGKMMEFRKSQVQKLADDSSLEIGDVTT
VNLTQLRGGVQSNVVPPLLEAVFDIRIAVTVDIPAFEKQIRDWCEEAGGG
IELEFEMKNPFVEPTKIDSSNAYWLAFKKALDDLGLKTRVRVFPGATDSR
YIRYAGIPALGFSPINNTPILLHDHDEFLKADTYLHGIEVYKKLIPAVAD
A*

BS11470.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6726-PC 401 CG6726-PC 1..401 1..401 2097 100 Plus
CG6726-PA 401 CG6726-PA 1..401 1..401 2097 100 Plus
CG6726-PB 401 CG6726-PB 1..401 1..401 2097 100 Plus
CG6733-PA 401 CG6733-PA 1..400 1..400 1571 72 Plus
CG17110-PB 402 CG17110-PB 5..402 3..401 1526 70.2 Plus