Clone Sequence Records
BS11471.3prime Sequence
916 bp (854 high quality bases) assembled on 2006-05-08
> BS11471.3prime
ATGGTCTAGAAAGCTTTTACTTGACCTTTCCGATAATGTCCAGCAGAAAG
GGTGTGTAGTAGGTGATGATGCAATCGGCACCAGCTCGTCGAAAGCCCTT
CATGGCCTCCAGCACGGCATCCTTGAGGTCAAAGGCTCCCGCCTTGGCGG
CATGATACAGCATAGCGAACTCCCCGGAAACCTGGTAGACGTACAGCGTG
TGATACGGATAGGAATCCTTTGTGGATCGTAGGATATCCAGATAGGGCAT
TCCCGGTTTCACCATCAGCATGTCGGCTCCCTCGGCGACATCACGTTGAA
TGGCTCTCATTGCTAAGCTTCTGGAGCCACTGGGCAGTTGATAGCACCTC
CGGTCACCGAATTTCGGTGCAGATTGTGCTGCCTCCCGGAAGGGTCCATA
GAAATTGGATGTGAACTTGGCGGAGTACGCCAGCAGGGATACACTGTTCA
TCTGGGCATCGATGAGGGCCTGCTTAATGGCCTTCACCCGGTTGTCCATC
ATGTCCGATGGAGCCACAATGTGTGCTCCAGCTTTGGCATAAGCCACGGC
GATCTCGGCTATCCGCTTTATGCTGGGTCCGTTCTCCAGACCCGTTTCGC
CCAGCAGGCCGCAGTGACCGTGCGAGGAGTACGGGCAGATGCACACATCA
CAGGCTATCAGCAGATCCGGAAACCATTCCCGGAGCTTCGGCAGTGCGAG
AACGACTGGATTCTTTGCTGAATCCGCATTGGAGGCCTGCTCATCCTTCA
TGTCCGGGTCCACAACGCCAAAGAGCAGCACCGACGACAGTCCCTTGGCC
ACCAGCGGTTCCAGGTGCTCCTTCAGGCGATTCAGTCCGAATCTCGAGAT
TCCTGGCATGCTGGCAATTGGCTGGACATCGTCGTCGTTGCTCACGATGA
ACACCGGATACATGAG
BS11471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10335-PA | 984 | Pbgs-RA | 85..984 | 916..17 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbgs-RB | 1894 | CG10335-RB | 155..1054 | 916..17 | 4500 | 100 | Minus |
| Pbgs-RA | 1378 | CG10335-RA | 155..1054 | 916..17 | 4500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12270292..12271191 | 17..916 | 4500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:30:55 has no hits.
BS11471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:13 Download gff for
BS11471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-PA | 85..984 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:07 Download gff for
BS11471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10335-PA | 85..984 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:36 Download gff for
BS11471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 155..1054 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:49 Download gff for
BS11471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 155..1054 | 17..916 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:49 Download gff for
BS11471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12270292..12271191 | 17..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:36 Download gff for
BS11471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12263392..12264291 | 17..916 | 100 | | Plus |
BS11471.5prime Sequence
977 bp (839 high quality bases) assembled on 2006-05-08
> BS11471.5prime
GAAGTTATCAGTCGACATGGAGCGGAAACTGCACAGTGGAATGCACCATG
CCACGCTGCGGCAGCTGCAGGAGTCGGGCTGCGAGATAGCGCCGCACAAT
CTCATGTATCCGGTGTTCATCGTGAGCAACGACGACGATGTCCAGCCAAT
TGCCAGCATGCCAGGAATCTCGAGATTCGGACTGAATCGCCTGAAGGAGC
ACCTGGAACCGCTGGTGGCCAAGGGACTGTCGTCGGTGCTGCTCTTTGGC
GTTGTGGACCCGGACATGAAGGATGAGCAGGCCTCCAATGCGGATTCAGC
AAAGAATCCAGTCGTTCTCGCACTGCCGAAGCTCCGGGAATGGTTTCCGG
ATCTGCTGATAGCCTGTGATGTGTGCATCTGCCCGTACTCCTCGCACGGT
CACTGCGGCCTGCTGGGCGAAACGGGTCTGGAGAACGGACCCAGCATAAA
GCGGATAGCCGAGATCGCCGTGGCTTATGCCAAAGCTGGAGCACACATTG
TGGCTCCATCGGACATGATGGACAACCGGGTGAAGGCCATTAAGCAGGCC
CTCATCGATGCCCAGATGAACAGTGTATCCCTGCTGGCGTACTCCGCCAA
GTTCACATCCAATTTCTATGGACCCTTCCGGGAGGCAGCACAATCTGCAC
CGAAATTCGGTGACCGGAGGTGCTATCAACTGCCCAGTGGCTCCAGAAGC
TTAGCAATGAGAGCCATTCAACGTGATGTCGCCGAGGGAGCCGACATGCT
GATGGTGAAACCGGGAATGCCCTATCTGGATATCCTACGATCCACAAAGG
ATTCCTATCCGTATCACACGCTGTACGTCTACCAGGTTTCCGGGGAGTTC
GCTATGCTGTATCATGCCGGCAAAGGCGGGAGCCTTTGACCCTCAGGATG
CCGTGCTGGAGGCCATGAAGGGCTTTCGACGAGCTGGTGCCGATTGCATC
ATCACCTACTACACACCTTTTCTGCTG
BS11471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10335-PA | 984 | Pbgs-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
| CG10335-PA | 984 | Pbgs-RA | 878..960 | 895..977 | 390 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbgs-RB | 1894 | CG10335-RB | 71..1030 | 17..977 | 4705 | 99.5 | Plus |
| Pbgs-RA | 1378 | CG10335-RA | 71..1030 | 17..977 | 4705 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12270316..12271275 | 977..17 | 4680 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:31:47 has no hits.
BS11471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:14 Download gff for
BS11471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-PA | 1..960 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:09 Download gff for
BS11471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10335-PA | 1..960 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:31 Download gff for
BS11471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 71..1030 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:46:46 Download gff for
BS11471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 71..1030 | 17..977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:46:46 Download gff for
BS11471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12270316..12271275 | 17..977 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:31 Download gff for
BS11471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12263416..12264375 | 17..977 | 99 | | Minus |
BS11471.complete Sequence
1016 bp assembled on 2006-11-01
GenBank Submission: FJ636881
> BS11471.complete
GAAGTTATCAGTCGACATGGAGCGGAAACTGCACAGTGGAATGCACCATG
CCACGCTGCGGCAGCTGCAGGAGTCGGGCTGCGAGATAGCGCCGCACAAT
CTCATGTATCCGGTGTTCATCGTGAGCAACGACGACGATGTCCAGCCAAT
TGCCAGCATGCCAGGAATCTCGAGATTCGGACTGAATCGCCTGAAGGAGC
ACCTGGAACCGCTGGTGGCCAAGGGACTGTCGTCGGTGCTGCTCTTTGGC
GTTGTGGACCCGGACATGAAGGATGAGCAGGCCTCCAATGCGGATTCAGC
AAAGAATCCAGTCGTTCTCGCACTGCCGAAGCTCCGGGAATGGTTTCCGG
ATCTGCTGATAGCCTGTGATGTGTGCATCTGCCCGTACTCCTCGCACGGT
CACTGCGGCCTGCTGGGCGAAACGGGTCTGGAGAACGGACCCAGCATAAA
GCGGATAGCCGAGATCGCCGTGGCTTATGCCAAAGCTGGAGCACACATTG
TGGCTCCATCGGACATGATGGACAACCGGGTGAAGGCCATTAAGCAGGCC
CTCATCGATGCCCAGATGAACAGTGTATCCCTGCTGGCGTACTCCGCCAA
GTTCACATCCAATTTCTATGGACCCTTCCGGGAGGCAGCACAATCTGCAC
CGAAATTCGGTGACCGGAGGTGCTATCAACTGCCCAGTGGCTCCAGAAGC
TTAGCAATGAGAGCCATTCAACGTGATGTCGCCGAGGGAGCCGACATGCT
GATGGTGAAACCGGGAATGCCCTATCTGGATATCCTACGATCCACAAAGG
ATTCCTATCCGTATCACACGCTGTACGTCTACCAGGTTTCCGGGGAGTTC
GCTATGCTGTATCATGCCGCCAAGGCGGGAGCCTTTGACCTCAAGGATGC
CGTGCTGGAGGCCATGAAGGGCTTTCGACGAGCTGGTGCCGATTGCATCA
TCACCTACTACACACCCTTTCTGCTGGACATTATCGGAAAGGTCAAGTAA
AAGCTTTCTAGACCAT
BS11471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbgs-RB | 984 | CG10335-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
| Pbgs-RA | 984 | CG10335-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbgs-RB | 1894 | CG10335-RB | 71..1054 | 17..1000 | 4920 | 100 | Plus |
| Pbgs-RA | 1378 | CG10335-RA | 71..1054 | 17..1000 | 4920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12270292..12271275 | 1000..17 | 4920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:47:41 has no hits.
BS11471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:56 Download gff for
BS11471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 1..984 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:57 Download gff for
BS11471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 56..1039 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:18 Download gff for
BS11471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 71..1052 | 17..998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:57 Download gff for
BS11471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 56..1039 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:46 Download gff for
BS11471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 71..1052 | 17..998 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:46 Download gff for
BS11471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12270294..12271275 | 17..998 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:18 Download gff for
BS11471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12263394..12264375 | 17..998 | 100 | | Minus |
BS11471.pep Sequence
Translation from 16 to 999
> BS11471.pep
MERKLHSGMHHATLRQLQESGCEIAPHNLMYPVFIVSNDDDVQPIASMPG
ISRFGLNRLKEHLEPLVAKGLSSVLLFGVVDPDMKDEQASNADSAKNPVV
LALPKLREWFPDLLIACDVCICPYSSHGHCGLLGETGLENGPSIKRIAEI
AVAYAKAGAHIVAPSDMMDNRVKAIKQALIDAQMNSVSLLAYSAKFTSNF
YGPFREAAQSAPKFGDRRCYQLPSGSRSLAMRAIQRDVAEGADMLMVKPG
MPYLDILRSTKDSYPYHTLYVYQVSGEFAMLYHAAKAGAFDLKDAVLEAM
KGFRRAGADCIITYYTPFLLDIIGKVK*
BS11471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbgs-PB | 327 | CG10335-PB | 1..327 | 1..327 | 1697 | 100 | Plus |
| Pbgs-PA | 327 | CG10335-PA | 1..327 | 1..327 | 1697 | 100 | Plus |
