Clone BS11472 Report

Search the DGRC for BS11472

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG4933-RA
Protein status:BS11472.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11472.3prime Sequence

835 bp (833 high quality bases) assembled on 2006-05-08

> BS11472.3prime
ATGGTCTAGAAAGCTTTTAGTCATCCCGCCAGCTGACCAGCACTTCGTCC
GTTCGAAATCGCTGAGTCACATAAGATTCCTCAAAGGGCATCCTAGTGCC
AGAGCGGAACATTTCTGCACCAGCATGGGCAATCATTAGTCCGTTGTCTA
TGCAGTAACGTTCATCAGTGGCAAAGAGTTTGCCTCCGCGTTCCTCGCAC
ATAATACGCATCATCTCCTGGAGTCGCTCATTGCAACCCACACCTCCAAC
TATAAGGACCTCATTTGAGCCGCAGTGTGCCATGGCGCGCTCTGTGATCT
CCACCAACATGGCGAAGATGGTCTCCTGCAGCGAATAGCAAAGATCGGCT
TGGCTGTAATTATTGACCTCTTCTTCCTGTGGCTTTTTTCTCTTATTTTG
CCTCTTGCCCGGCTCTGCCAGGTCCTCGATGTAGGATAAAATCCCCGAGA
AGCTGACATCCATGCCCTTAACCACATAGGGCAGTTTAATATAACGATTG
CTCGACTTGGCCAGCTGCTCGATGTTGTAGCCCGGACTAGGATCGTTGGA
CAGCTTAATGATGCGGGCGAATCGATCCAGGCAATTGCCCACTGCAATGT
CTATAGTTTCGCCAAAGATGCGATATCGCTTATTGGAGTAGGCAATAACC
TGTGTGTTTCCACCGCTCACATAGAGAACTGTAGGATTCTGGGCACCGGT
GATCAGGCGACCCATCTCGATGTGTCCAATGCAGTGATTTACGCCCAGCA
GCGGGATATTCCACAAGAGCGACAAAGTGCGAGCCACAATGGCGCCAACC
AGCAAAGGAGGAGCCATTCCTGGGCCTTTTGTGTA

BS11472.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-PA 1044 CG4933-RA 226..1044 835..17 4095 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-RA 1180 CG4933-RA 289..1107 835..17 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16352340..16352917 835..258 2890 100 Minus
3L 28110227 3L 16352969..16353213 261..17 1225 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:54:34 has no hits.

BS11472.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:15 Download gff for BS11472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-PA 227..1044 17..834 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:10 Download gff for BS11472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-PA 227..1044 17..834 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:20 Download gff for BS11472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 290..1107 17..834 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:51 Download gff for BS11472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 290..1107 17..834 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:51 Download gff for BS11472.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16352341..16352915 260..834 100 -> Minus
3L 16352971..16353213 17..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:20 Download gff for BS11472.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16346071..16346313 17..259 100   Minus
arm_3L 16345441..16346015 260..834 100 -> Minus

BS11472.5prime Sequence

879 bp (807 high quality bases) assembled on 2006-05-08

> BS11472.5prime
GAAGTTATCAGTCGACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCA
ATAAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTA
CGTAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAAC
GGCCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAA
AGGAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAA
GGCCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCAC
TTTGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTG
GACACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTT
CTCTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCG
ATATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGG
ATCGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTAC
AACATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTA
TGTGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCG
AGGACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAG
GAAGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCA
GGAGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCAC
ACTGCGGCTCAAATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAG
CGACTCCAGGAGATGATGCGTATTATGTG

BS11472.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-PA 1044 CG4933-RA 1..863 17..879 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-RA 1180 CG4933-RA 62..926 15..879 4325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16352228..16352917 130..819 3450 100 Plus
3L 28110227 3L 16352052..16352170 15..133 595 100 Plus
3L 28110227 3L 16352969..16353032 816..879 320 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:23:43 has no hits.

BS11472.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:16 Download gff for BS11472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-PA 1..863 17..879 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:12 Download gff for BS11472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-PA 1..863 17..879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:48 Download gff for BS11472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 62..926 15..879 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:26:26 Download gff for BS11472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 62..926 15..879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:26:26 Download gff for BS11472.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16352052..16352168 15..131 100 -> Plus
3L 16352230..16352915 132..817 100 -> Plus
3L 16352971..16353032 818..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:48 Download gff for BS11472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16345152..16345268 15..131 100 -> Plus
arm_3L 16345330..16346015 132..817 100 -> Plus
arm_3L 16346071..16346132 818..879 100   Plus

BS11472.complete Sequence

1076 bp assembled on 2006-11-01

GenBank Submission: FJ636882

> BS11472.complete
GAAGTTATCAGTCGACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCA
ATAAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTA
CGTAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAAC
GGCCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAA
AGGAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAA
GGCCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCAC
TTTGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTG
GACACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTT
CTCTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCG
ATATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGG
ATCGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTAC
AACATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTA
TGTGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCG
AGGACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAG
GAAGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCA
GGAGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCAC
ACTGCGGCTCAAATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAG
CGACTCCAGGAGATGATGCGTATTATGTGCGAGGAACGCGGAGGCAAACT
CTTTGCCACTGATGAACGTTACTGCATAGACAACGGACTAATGATTGCCC
ATGCTGGTGCAGAAATGTTCCGCTCTGGCACTAGGATGCCCTTTGAGGAA
TCTTATGTGACTCAGCGATTTCGAACGGACGAAGTGCTGGTCAGCTGGCG
GGATGACTAAAAGCTTTCTAGACCAT

BS11472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-RA 1044 CG4933-PA 1..1044 17..1060 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-RA 1180 CG4933-RA 62..1107 15..1060 5230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16352228..16352917 130..819 3450 100 Plus
3L 28110227 3L 16352969..16353213 816..1060 1225 100 Plus
3L 28110227 3L 16352052..16352170 15..133 595 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:38:50 has no hits.

BS11472.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:35 Download gff for BS11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1044 17..1060 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:41 Download gff for BS11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 13..1058 15..1060 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:33 Download gff for BS11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 64..1105 17..1058 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:35 Download gff for BS11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 13..1058 15..1060 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:17 Download gff for BS11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 64..1105 17..1058 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:17 Download gff for BS11472.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16352971..16353211 818..1058 100   Plus
3L 16352054..16352168 17..131 100 -> Plus
3L 16352230..16352915 132..817 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:33 Download gff for BS11472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16345154..16345268 17..131 100 -> Plus
arm_3L 16345330..16346015 132..817 100 -> Plus
arm_3L 16346071..16346311 818..1058 100   Plus

BS11472.pep Sequence

Translation from 16 to 1059

> BS11472.pep
MVCALGIEGSANKIGIGIIRDGKVLANVRRTYITPPGEGFLPKETAKHHR
EAILGLVESSLKEAQLKSSDLDVICYTKGPGMAPPLLVGAIVARTLSLLW
NIPLLGVNHCIGHIEMGRLITGAQNPTVLYVSGGNTQVIAYSNKRYRIFG
ETIDIAVGNCLDRFARIIKLSNDPSPGYNIEQLAKSSNRYIKLPYVVKGM
DVSFSGILSYIEDLAEPGKRQNKRKKPQEEEVNNYSQADLCYSLQETIFA
MLVEITERAMAHCGSNEVLIVGGVGCNERLQEMMRIMCEERGGKLFATDE
RYCIDNGLMIAHAGAEMFRSGTRMPFEESYVTQRFRTDEVLVSWRDD*

BS11472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-PA 347 CG4933-PA 1..347 1..347 1800 100 Plus
CG14231-PB 409 CG14231-PB 28..362 5..316 274 30.9 Plus
CG14231-PA 409 CG14231-PA 28..362 5..316 274 30.9 Plus