Clone Sequence Records
BS11472.3prime Sequence
835 bp (833 high quality bases) assembled on 2006-05-08
> BS11472.3prime
ATGGTCTAGAAAGCTTTTAGTCATCCCGCCAGCTGACCAGCACTTCGTCC
GTTCGAAATCGCTGAGTCACATAAGATTCCTCAAAGGGCATCCTAGTGCC
AGAGCGGAACATTTCTGCACCAGCATGGGCAATCATTAGTCCGTTGTCTA
TGCAGTAACGTTCATCAGTGGCAAAGAGTTTGCCTCCGCGTTCCTCGCAC
ATAATACGCATCATCTCCTGGAGTCGCTCATTGCAACCCACACCTCCAAC
TATAAGGACCTCATTTGAGCCGCAGTGTGCCATGGCGCGCTCTGTGATCT
CCACCAACATGGCGAAGATGGTCTCCTGCAGCGAATAGCAAAGATCGGCT
TGGCTGTAATTATTGACCTCTTCTTCCTGTGGCTTTTTTCTCTTATTTTG
CCTCTTGCCCGGCTCTGCCAGGTCCTCGATGTAGGATAAAATCCCCGAGA
AGCTGACATCCATGCCCTTAACCACATAGGGCAGTTTAATATAACGATTG
CTCGACTTGGCCAGCTGCTCGATGTTGTAGCCCGGACTAGGATCGTTGGA
CAGCTTAATGATGCGGGCGAATCGATCCAGGCAATTGCCCACTGCAATGT
CTATAGTTTCGCCAAAGATGCGATATCGCTTATTGGAGTAGGCAATAACC
TGTGTGTTTCCACCGCTCACATAGAGAACTGTAGGATTCTGGGCACCGGT
GATCAGGCGACCCATCTCGATGTGTCCAATGCAGTGATTTACGCCCAGCA
GCGGGATATTCCACAAGAGCGACAAAGTGCGAGCCACAATGGCGCCAACC
AGCAAAGGAGGAGCCATTCCTGGGCCTTTTGTGTA
BS11472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-PA | 1044 | CG4933-RA | 226..1044 | 835..17 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-RA | 1180 | CG4933-RA | 289..1107 | 835..17 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16352340..16352917 | 835..258 | 2890 | 100 | Minus |
3L | 28110227 | 3L | 16352969..16353213 | 261..17 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:54:34 has no hits.
BS11472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:15 Download gff for
BS11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-PA | 227..1044 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:10 Download gff for
BS11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-PA | 227..1044 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:20 Download gff for
BS11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 290..1107 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:51 Download gff for
BS11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 290..1107 | 17..834 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:51 Download gff for
BS11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16352341..16352915 | 260..834 | 100 | -> | Minus |
3L | 16352971..16353213 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:20 Download gff for
BS11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16346071..16346313 | 17..259 | 100 | | Minus |
arm_3L | 16345441..16346015 | 260..834 | 100 | -> | Minus |
BS11472.5prime Sequence
879 bp (807 high quality bases) assembled on 2006-05-08
> BS11472.5prime
GAAGTTATCAGTCGACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCA
ATAAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTA
CGTAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAAC
GGCCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAA
AGGAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAA
GGCCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCAC
TTTGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTG
GACACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTT
CTCTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCG
ATATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGG
ATCGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTAC
AACATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTA
TGTGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCG
AGGACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAG
GAAGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCA
GGAGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCAC
ACTGCGGCTCAAATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAG
CGACTCCAGGAGATGATGCGTATTATGTG
BS11472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-PA | 1044 | CG4933-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-RA | 1180 | CG4933-RA | 62..926 | 15..879 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16352228..16352917 | 130..819 | 3450 | 100 | Plus |
3L | 28110227 | 3L | 16352052..16352170 | 15..133 | 595 | 100 | Plus |
3L | 28110227 | 3L | 16352969..16353032 | 816..879 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:23:43 has no hits.
BS11472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:16 Download gff for
BS11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:12 Download gff for
BS11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:48 Download gff for
BS11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 62..926 | 15..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:26:26 Download gff for
BS11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 62..926 | 15..879 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:26:26 Download gff for
BS11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16352052..16352168 | 15..131 | 100 | -> | Plus |
3L | 16352230..16352915 | 132..817 | 100 | -> | Plus |
3L | 16352971..16353032 | 818..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:48 Download gff for
BS11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16345152..16345268 | 15..131 | 100 | -> | Plus |
arm_3L | 16345330..16346015 | 132..817 | 100 | -> | Plus |
arm_3L | 16346071..16346132 | 818..879 | 100 | | Plus |
BS11472.complete Sequence
1076 bp assembled on 2006-11-01
GenBank Submission: FJ636882
> BS11472.complete
GAAGTTATCAGTCGACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCA
ATAAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTA
CGTAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAAC
GGCCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAA
AGGAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAA
GGCCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCAC
TTTGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTG
GACACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTT
CTCTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCG
ATATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGG
ATCGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTAC
AACATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTA
TGTGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCG
AGGACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAG
GAAGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCA
GGAGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCAC
ACTGCGGCTCAAATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAG
CGACTCCAGGAGATGATGCGTATTATGTGCGAGGAACGCGGAGGCAAACT
CTTTGCCACTGATGAACGTTACTGCATAGACAACGGACTAATGATTGCCC
ATGCTGGTGCAGAAATGTTCCGCTCTGGCACTAGGATGCCCTTTGAGGAA
TCTTATGTGACTCAGCGATTTCGAACGGACGAAGTGCTGGTCAGCTGGCG
GGATGACTAAAAGCTTTCTAGACCAT
BS11472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-RA | 1044 | CG4933-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-RA | 1180 | CG4933-RA | 62..1107 | 15..1060 | 5230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16352228..16352917 | 130..819 | 3450 | 100 | Plus |
3L | 28110227 | 3L | 16352969..16353213 | 816..1060 | 1225 | 100 | Plus |
3L | 28110227 | 3L | 16352052..16352170 | 15..133 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:38:50 has no hits.
BS11472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:35 Download gff for
BS11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 1..1044 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:41 Download gff for
BS11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 13..1058 | 15..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:33 Download gff for
BS11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 64..1105 | 17..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:35 Download gff for
BS11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 13..1058 | 15..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:17 Download gff for
BS11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 64..1105 | 17..1058 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:17 Download gff for
BS11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16352971..16353211 | 818..1058 | 100 | | Plus |
3L | 16352054..16352168 | 17..131 | 100 | -> | Plus |
3L | 16352230..16352915 | 132..817 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:33 Download gff for
BS11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16345154..16345268 | 17..131 | 100 | -> | Plus |
arm_3L | 16345330..16346015 | 132..817 | 100 | -> | Plus |
arm_3L | 16346071..16346311 | 818..1058 | 100 | | Plus |
BS11472.pep Sequence
Translation from 16 to 1059
> BS11472.pep
MVCALGIEGSANKIGIGIIRDGKVLANVRRTYITPPGEGFLPKETAKHHR
EAILGLVESSLKEAQLKSSDLDVICYTKGPGMAPPLLVGAIVARTLSLLW
NIPLLGVNHCIGHIEMGRLITGAQNPTVLYVSGGNTQVIAYSNKRYRIFG
ETIDIAVGNCLDRFARIIKLSNDPSPGYNIEQLAKSSNRYIKLPYVVKGM
DVSFSGILSYIEDLAEPGKRQNKRKKPQEEEVNNYSQADLCYSLQETIFA
MLVEITERAMAHCGSNEVLIVGGVGCNERLQEMMRIMCEERGGKLFATDE
RYCIDNGLMIAHAGAEMFRSGTRMPFEESYVTQRFRTDEVLVSWRDD*
BS11472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-PA | 347 | CG4933-PA | 1..347 | 1..347 | 1800 | 100 | Plus |
CG14231-PB | 409 | CG14231-PB | 28..362 | 5..316 | 274 | 30.9 | Plus |
CG14231-PA | 409 | CG14231-PA | 28..362 | 5..316 | 274 | 30.9 | Plus |