Clone BS11473 Report

Search the DGRC for BS11473

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:73
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS11473.pep: validated full length
Sequenced Size:16

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12534-RA 2009-01-21 est gleaning

Clone Sequence Records

BS11473.3prime Sequence

612 bp (611 high quality bases) assembled on 2006-05-08

> BS11473.3prime
ATGGTCTAGAAAGCTTCTAGTCGCAGGAGCCGTCTAGCCAGCCGTCGCGC
CACCTCTCGTTCACCTTGGTGCAATCGAAGAGCGGTTTGCCCAGTTTGTC
GTTCACTCGGTTGTGGAACTTGCACAGCCACAGTGCTAGCTCCTTTTGGG
AGTTCACATTGATGGGGTTGACGTCCAGGTCGGTGCGAAAGTCCTTGGCG
CAAAACTCGCAGGGGTAAAGGCGCGACAGAACCTCAAAAAAGGTCTTCAT
GTCGCGCTTCTCGGTGTCCGTGGGGTTGTCCGAGTAAAAGGCGGCCATGG
TGTGGAGCAGTCCCCAGGTGGAAATTCCCAGCCTCACCTTGTCCAGCGGG
CAGTCGTCGCGGGGCAGCGGATCTTCGGCGGCGTTGACGGTCAGCTTTTC
GGCGGCGGCCATGTGCTTCACCTTGGCGCTCTGCACGTTGGAGATGAGGC
GTTGCTGCTTGGACCACGACTTGAAATCGTTGCAGGTGCGGCAGTTCGAG
TCCTGTTTGCCGGCGCCGCTGGCACCGGCCTTGCGGTTCGCTGCGAATGG
GGACTCGTGGTGCTCCTTATCCATCTCGGGATTCGCCTCGGCAGACATGT
CGACTGATAACT

BS11473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12534-PA 582 CG12534-RA 1..582 598..17 2910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 1362 CG12534-RB 464..1046 599..17 2915 100 Minus
Alr-RA 1107 CG12534-RA 209..791 599..17 2915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19749386..19749629 423..180 1220 100 Minus
X 23542271 X 19749131..19749312 599..418 910 100 Minus
X 23542271 X 19749689..19749851 179..17 815 100 Minus
Blast to na_te.dros performed on 2015-01-31 12:11:36 has no hits.

BS11473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:17 Download gff for BS11473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12534-PA 1..582 17..598 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:13 Download gff for BS11473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12534-PA 1..582 17..598 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:06 Download gff for BS11473.3prime
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 205..793 13..607 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:25 Download gff for BS11473.3prime
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 205..793 13..607 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:25 Download gff for BS11473.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19749126..19749308 422..604 98 -> Minus
X 19749388..19749629 180..421 100 -> Minus
X 19749689..19749853 13..179 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:06 Download gff for BS11473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19643159..19643341 422..604 98 -> Minus
arm_X 19643421..19643662 180..421 100 -> Minus
arm_X 19643722..19643886 13..179 98   Minus

BS11473.5prime Sequence

612 bp (611 high quality bases) assembled on 2006-05-08

> BS11473.5prime
GAAGTTATCAGTCGACATGTCTGCCGAGGCGAATCCCGAGATGGATAAGG
AGCACCACGAGTCCCCATTCGCAGCGAACCGCAAGGCCGGTGCCAGCGGC
GCCGGCAAACAGGACTCGAACTGCCGCACCTGCAACGATTTCAAGTCGTG
GTCCAAGCAGCAACGCCTCATCTCCAACGTGCAGAGCGCCAAGGTGAAGC
ACATGGCCGCCGCCGAAAAGCTGACCGTCAACGCCGCCGAAGATCCGCTG
CCCCGCGACGACTGCCCGCTGGACAAGGTGAGGCTGGGAATTTCCACCTG
GGGACTGCTCCACACCATGGCCGCCTTTTACTCGGACAACCCCACGGACA
CCGAGAAGCGCGACATGAAGACCTTTTTTGAGGTTCTGTCGCGCCTTTAC
CCCTGCGAGTTTTGCGCCAAGGACTTTCGCACCGACCTGGACGTCAACCC
CATCAATGTGAACTCCCAAAAGGAGCTAGCACTGTGGCTGTGCAAGTTCC
ACAACCGAGTGAACGACAAACTGGGCAAACCGCTCTTCGATTGCACCAAG
GTGAACGAGAGGTGGCGCGACGGCTGGCTAGACGGCTCCTGCGACTAGAA
GCTTTCTAGACC

BS11473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12534-PA 582 CG12534-RA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 1362 CG12534-RB 464..1046 16..598 2915 100 Plus
Alr-RA 1107 CG12534-RA 209..791 16..598 2915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19749386..19749629 192..435 1220 100 Plus
X 23542271 X 19749131..19749312 16..197 910 100 Plus
X 23542271 X 19749689..19749851 436..598 815 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:41:21 has no hits.

BS11473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:18 Download gff for BS11473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12534-PA 1..582 17..598 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:15 Download gff for BS11473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12534-PA 1..582 17..598 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:19:58 Download gff for BS11473.5prime
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 205..793 8..602 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:12:39 Download gff for BS11473.5prime
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 205..793 8..602 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:12:39 Download gff for BS11473.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19749126..19749308 11..193 98 -> Plus
X 19749388..19749629 194..435 100 -> Plus
X 19749689..19749853 436..602 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:19:58 Download gff for BS11473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19643159..19643341 11..193 98 -> Plus
arm_X 19643421..19643662 194..435 100 -> Plus
arm_X 19643722..19643886 436..602 98   Plus

BS11473.complete Sequence

614 bp assembled on 2006-11-01

> BS11473.complete
GAAGTTATCAGTCGACATGTCTGCCGAGGCGAATCCCGAGATGGATAAGG
AGCACCACGAGTCCCCATTCGCAGCGAACCGCAAGGCCGGTGCCAGCGGC
GCCGGCAAACAGGACTCGAACTGCCGCACCTGCAACGATTTCAAGTCGTG
GTCCAAGCAGCAACGCCTCATCTCCAACGTGCAGAGCGCCAAGGTGAAGC
ACATGGCCGCCGCCGAAAAGCTGACCGTCAACGCCGCCGAAGATCCGCTG
CCCCGCGACGACTGCCCGCTGGACAAGGTGAGGCTGGGAATTTCCACCTG
GGGACTGCTCCACACCATGGCCGCCTTTTACTCGGACAACCCCACGGACA
CCGAGAAGCGCGACATGAAGACCTTTTTTGAGGTTCTGTCGCGCCTTTAC
CCCTGCGAGTTTTGCGCCAAGGACTTTCGCACCGACCTGGACGTCAACCC
CATCAATGTGAACTCCCAAAAGGAGCTAGCACTGTGGCTGTGCAAGTTCC
ACAACCGAGTGAACGACAAACTGGGCAAACCGCTCTTCGATTGCACCAAG
GTGAACGAGAGGTGGCGCGACGGCTGGCTAGACGGCTCCTGCGACTAGAA
GCTTTCTAGACCAT

BS11473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 801 CG12534-PB 219..801 16..598 2915 100 Plus
Alr-RA 786 CG12534-PA 204..786 16..598 2915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 1362 CG12534-RB 464..1046 16..598 2915 100 Plus
Alr-RA 1107 CG12534-RA 209..791 16..598 2915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19749386..19749629 192..435 1220 100 Plus
X 23542271 X 19749131..19749312 16..197 910 100 Plus
X 23542271 X 19749689..19749851 436..598 815 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:54:09 has no hits.

BS11473.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:36 Download gff for BS11473.complete
Subject Subject Range Query Range Percent Splice Strand
CG12534-RA 200..786 8..598 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:43 Download gff for BS11473.complete
Subject Subject Range Query Range Percent Splice Strand
CG12534-RA 209..797 8..602 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:53 Download gff for BS11473.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 210..791 17..598 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:36 Download gff for BS11473.complete
Subject Subject Range Query Range Percent Splice Strand
CG12534-RA 209..797 8..602 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:09 Download gff for BS11473.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 210..791 17..598 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:09 Download gff for BS11473.complete
Subject Subject Range Query Range Percent Splice Strand
X 19749689..19749851 436..598 100   Plus
X 19749132..19749308 17..193 100 -> Plus
X 19749388..19749629 194..435 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:53 Download gff for BS11473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19643165..19643341 17..193 100 -> Plus
arm_X 19643421..19643662 194..435 100 -> Plus
arm_X 19643722..19643884 436..598 100   Plus

BS11473.pep Sequence

Translation from 16 to 597

> BS11473.pep
MSAEANPEMDKEHHESPFAANRKAGASGAGKQDSNCRTCNDFKSWSKQQR
LISNVQSAKVKHMAAAEKLTVNAAEDPLPRDDCPLDKVRLGISTWGLLHT
MAAFYSDNPTDTEKRDMKTFFEVLSRLYPCEFCAKDFRTDLDVNPINVNS
QKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDGSCD*

BS11473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-PA 261 CG12534-PA 69..261 1..193 1054 100 Plus
Alr-PB 266 CG12534-PB 74..266 1..193 1054 100 Plus