Clone Sequence Records
BS11474.3prime Sequence
561 bp (546 high quality bases) assembled on 2006-05-08
> BS11474.3prime
ATGGTCTAGAAAGCTTTTACTTTCTGTTCAGATTGTAGTTCCTCAGATAG
ATGCCAGCGAGAACCTCCTGGATGCGGCGACGTCGCTTGTCCTGCATCAG
TATGGAGACCAGATGCTTGGGACTCAATCCCCTGTTGCTCTGGCGATCCA
TGGCATCGATCTCGTCCTCGCTGATCACGTCCTCCTCGCGATCATCGTCA
GCCTGGCTGATTGGTCCATCGGCCAGGGGAATCTCCGCATTTCCATCCTC
GGCCGCGTTGACCACCTCGGAATCATCCTCGAAGAGACTTCCATCGGCCA
GGTCGTCCAGGTTGAGGCCCTGCAGCAAATCGGAAATGGTGGGCACGAAG
GCGCTGCGCCGTGAGCTAGTGGAGTTGGAGCTGTTAGAGCTGGCGGGCAG
GTAGATGCCCTGCATGTTGTTGGGGTTGATGATCAGGTAGGTGGGGCCTC
CTCCCACAGTGTTCCAGTCCATGCCGGGAAACGGTGGCGGAGGACGGTTT
TGAGGTGGTGGTGGTGGGTAGTACGGGTAGTAGGGATAGTTGGGGTTGNG
GTGGTGGTGTT
BS11474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-PA | 762 | CG13983-RA | 219..762 | 560..17 | 2701 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-RA | 877 | CG13983-RA | 256..799 | 560..17 | 2709 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6263635..6264178 | 17..560 | 2709 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:21:40 has no hits.
BS11474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:19 Download gff for
BS11474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-PA | 217..762 | 17..561 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:16 Download gff for
BS11474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-PA | 217..762 | 17..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:31 Download gff for
BS11474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 254..799 | 17..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:50 Download gff for
BS11474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 254..799 | 17..561 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:50 Download gff for
BS11474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6263635..6264178 | 17..561 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:31 Download gff for
BS11474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6263635..6264178 | 17..561 | 99 | | Plus |
BS11474.5prime Sequence
792 bp (791 high quality bases) assembled on 2006-05-08
> BS11474.5prime
GAAGTTATCAGTCGACATGAGAACCCTGAGCGTCTTGATTCTCCTCGCCA
CTCTGGTTGCCTTTTGTGCAGCCCAGCAGGCCTCCAACGGCAAGAACAGA
AAGGAAAATGCCTTCTCCAAGATCGTTCCTCGCCTGCTGTGGAACATCAA
GCGCGGCGACCAGGAGAGCCACCGCAACTCCCAGCAGCCCATCATCATAG
TGCAGCAGCCCAGCTCGAATCAGGAATCGGATAGACACCACCACCACAAC
CCCAACTATCCCTACTACCCGTACTACCCACCACCACCACCTCAAAACCG
TCCTCCGCCACCGTTTCCCGGCATGGACTGGAACACTGTGGGAGGAGGCC
CCACCTACCTGATCATCAACCCCAACAACATGCAGGGCATCTACCTGCCC
GCCAGCTCTAACAGCTCCAACTCCACTAGCTCACGGCGCAGCGCCTTCGT
GCCCACCATTTCCGATTTGCTGCAGGGCCTCAACCTGGACGACCTGGCCG
ATGGAAGTCTCTTCGAGGATGATTCCGAGGTGGTCAACGCGGCCGAGGAT
GGAAATGCGGAGATTCCCCTGGCCGATGGACCAATCAGCCAGGCTGACGA
TGATCGCGAGGAGGACGTGATCAGCGAGGACGAGATCGATGCCATGGATC
GCCAGAGCAACAGGGGATTGAGTCCCAAGCATCTGGTCTCCATACTGATG
CAGGACAAGCGACGTCGCCGCATCCAGGAGGTTCTCGCTGGCATCTATCT
GAGGAACTACAATCTGAACAGAAAGTAAAAGCTTTCTAGACC
BS11474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-PA | 762 | CG13983-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-RA | 877 | CG13983-RA | 37..799 | 16..778 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6263635..6264303 | 778..110 | 3345 | 100 | Minus |
| 2L | 23513712 | 2L | 6264360..6264454 | 110..16 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:26:25 has no hits.
BS11474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:20 Download gff for
BS11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:17 Download gff for
BS11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:05 Download gff for
BS11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 32..799 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:46 Download gff for
BS11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 32..799 | 9..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:46 Download gff for
BS11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6263635..6264302 | 111..778 | 100 | <- | Minus |
| 2L | 6264360..6264459 | 9..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:05 Download gff for
BS11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6263635..6264302 | 111..778 | 100 | <- | Minus |
| arm_2L | 6264360..6264459 | 9..110 | 96 | | Minus |
BS11474.complete Sequence
794 bp assembled on 2006-11-01
GenBank Submission: FJ636883
> BS11474.complete
GAAGTTATCAGTCGACATGAGAACCCTGAGCGTCTTGATTCTCCTCGCCA
CTCTGGTTGCCTTTTGTGCAGCCCAGCAGGCCTCCAACGGCAAGAACAGA
AAGGAAAATGCCTTCTCCAAGATCGTTCCTCGCCTGCTGTGGAACATCAA
GCGCGGCGACCAGGAGAGCCACCGCAACTCCCAGCAGCCCATCATCATAG
TGCAGCAGCCCAGCTCGAATCAGGAATCGGATAGACACCACCACCACAAC
CCCAACTATCCCTACTACCCGTACTACCCACCACCACCACCTCAAAACCG
TCCTCCGCCACCGTTTCCCGGCATGGACTGGAACACTGTGGGAGGAGGCC
CCACCTACCTGATCATCAACCCCAACAACATGCAGGGCATCTACCTGCCC
GCCAGCTCTAACAGCTCCAACTCCACTAGCTCACGGCGCAGCGCCTTCGT
GCCCACCATTTCCGATTTGCTGCAGGGCCTCAACCTGGACGACCTGGCCG
ATGGAAGTCTCTTCGAGGATGATTCCGAGGTGGTCAACGCGGCCGAGGAT
GGAAATGCGGAGATTCCCCTGGCCGATGGACCAATCAGCCAGGCTGACGA
TGATCGCGAGGAGGACGTGATCAGCGAGGACGAGATCGATGCCATGGATC
GCCAGAGCAACAGGGGATTGAGTCCCAAGCATCTGGTCTCCATACTGATG
CAGGACAAGCGACGTCGCCGCATCCAGGAGGTTCTCGCTGGCATCTATCT
GAGGAACTACAATCTGAACAGAAAGTAAAAGCTTTCTAGACCAT
BS11474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-RA | 762 | CG13983-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-RA | 877 | CG13983-RA | 37..799 | 16..778 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6263635..6264303 | 778..110 | 3345 | 100 | Minus |
| 2L | 23513712 | 2L | 6264360..6264454 | 110..16 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:34:38 has no hits.
BS11474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:24 Download gff for
BS11474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:28 Download gff for
BS11474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 29..796 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:41 Download gff for
BS11474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 38..797 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:24 Download gff for
BS11474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 29..796 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:26 Download gff for
BS11474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 38..797 | 17..776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:26 Download gff for
BS11474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6263637..6264302 | 111..776 | 100 | <- | Minus |
| 2L | 6264360..6264453 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:41 Download gff for
BS11474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6263637..6264302 | 111..776 | 100 | <- | Minus |
| arm_2L | 6264360..6264453 | 17..110 | 100 | | Minus |
BS11474.pep Sequence
Translation from 16 to 777
> BS11474.pep
MRTLSVLILLATLVAFCAAQQASNGKNRKENAFSKIVPRLLWNIKRGDQE
SHRNSQQPIIIVQQPSSNQESDRHHHHNPNYPYYPYYPPPPPQNRPPPPF
PGMDWNTVGGGPTYLIINPNNMQGIYLPASSNSSNSTSSRRSAFVPTISD
LLQGLNLDDLADGSLFEDDSEVVNAAEDGNAEIPLADGPISQADDDREED
VISEDEIDAMDRQSNRGLSPKHLVSILMQDKRRRRIQEVLAGIYLRNYNL
NRK*
BS11474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-PA | 253 | CG13983-PA | 1..253 | 1..253 | 1332 | 100 | Plus |
