Clone BS11475 Report

Search the DGRC for BS11475

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:114
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptDim1-RA
Protein status:BS11475.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11475.3prime Sequence

459 bp (458 high quality bases) assembled on 2006-05-08

> BS11475.3prime
ATGGTCTAGAAAGCTTTTAGTATCTGTACTTGGTAGAGTAGTCCTTGGGC
GAGACTACCAGACCACGGCCCTTACGGGCACCTCGATACACCGTTTCCAC
AATGTCGATCATCTCCTGCTTGTCCTCCAGTGGCCAGTTGATCTTGTTGT
TGTTGCCCGTGCCCAAATCGATCATGATGTGCTTGTTGCGGAAGAAGAAC
ATCACCGTGCAAGGATCGTACAACTCGTACATCTTGTTGAAGTCCGGCAC
CTCGGTAATGTCCACCAAATAGATGACAGCAAAGTTCTTCACCTTCTCGG
CGATGCTGTACATGACCTCATCCATTTTCATGCAGGCGGGGTCCCAATCG
TGACCGAAACGTATTACAACTACTCGGTCCTCCTCGGAGAGAATGGCCTG
GTCCACCTGCCAGCCATTGTGCAAATGAGGGAGCATATACGACATGTCGA
CTGATAACT

BS11475.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3058-PA 429 CG3058-RA 1..429 445..17 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-RA 606 CG3058-RA 87..515 445..17 2145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4403514..4403864 367..17 1755 100 Minus
2L 23513712 2L 4403337..4403416 445..366 400 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:28:21 has no hits.

BS11475.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:21 Download gff for BS11475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3058-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:19 Download gff for BS11475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3058-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:04 Download gff for BS11475.3prime
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 83..515 17..453 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:20 Download gff for BS11475.3prime
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 83..515 17..453 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:20 Download gff for BS11475.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4403333..4403414 368..453 95 -> Minus
2L 4403514..4403864 17..367 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:04 Download gff for BS11475.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4403333..4403414 368..453 95 -> Minus
arm_2L 4403514..4403864 17..367 100   Minus

BS11475.5prime Sequence

459 bp (458 high quality bases) assembled on 2006-05-08

> BS11475.5prime
GAAGTTATCAGTCGACATGTCGTATATGCTCCCTCATTTGCACAATGGCT
GGCAGGTGGACCAGGCCATTCTCTCCGAGGAGGACCGAGTAGTTGTAATA
CGTTTCGGTCACGATTGGGACCCCGCCTGCATGAAAATGGATGAGGTCAT
GTACAGCATCGCCGAGAAGGTGAAGAACTTTGCTGTCATCTATTTGGTGG
ACATTACCGAGGTGCCGGACTTCAACAAGATGTACGAGTTGTACGATCCT
TGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGATTTGGG
CACGGGCAACAACAACAAGATCAACTGGCCACTGGAGGACAAGCAGGAGA
TGATCGACATTGTGGAAACGGTGTATCGAGGTGCCCGTAAGGGCCGTGGT
CTGGTAGTCTCGCCCAAGGACTACTCTACCAAGTACAGATACTAAAAGCT
TTCTAGACC

BS11475.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3058-PA 429 CG3058-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-RA 606 CG3058-RA 87..515 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4403514..4403864 95..445 1755 100 Plus
2L 23513712 2L 4403337..4403416 17..96 400 100 Plus
Blast to na_te.dros performed on 2015-02-04 10:28:27 has no hits.

BS11475.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:22 Download gff for BS11475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3058-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:20 Download gff for BS11475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3058-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:25:54 Download gff for BS11475.5prime
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 83..515 9..445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:08 Download gff for BS11475.5prime
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 83..515 9..445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:08 Download gff for BS11475.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4403336..4403414 16..94 98 -> Plus
2L 4403514..4403864 95..445 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:25:54 Download gff for BS11475.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4403336..4403414 16..94 98 -> Plus
arm_2L 4403514..4403864 95..445 100   Plus

BS11475.complete Sequence

461 bp assembled on 2006-11-01

GenBank Submission: FJ636884

> BS11475.complete
GAAGTTATCAGTCGACATGTCGTATATGCTCCCTCATTTGCACAATGGCT
GGCAGGTGGACCAGGCCATTCTCTCCGAGGAGGACCGAGTAGTTGTAATA
CGTTTCGGTCACGATTGGGACCCCGCCTGCATGAAAATGGATGAGGTCAT
GTACAGCATCGCCGAGAAGGTGAAGAACTTTGCTGTCATCTATTTGGTGG
ACATTACCGAGGTGCCGGACTTCAACAAGATGTACGAGTTGTACGATCCT
TGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGATTTGGG
CACGGGCAACAACAACAAGATCAACTGGCCACTGGAGGACAAGCAGGAGA
TGATCGACATTGTGGAAACGGTGTATCGAGGTGCCCGTAAGGGCCGTGGT
CTGGTAGTCTCGCCCAAGGACTACTCTACCAAGTACAGATACTAAAAGCT
TTCTAGACCAT

BS11475.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-RA 429 CG3058-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-RA 606 CG3058-RA 87..515 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4403514..4403864 95..445 1755 100 Plus
2L 23513712 2L 4403337..4403416 17..96 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:53:22 has no hits.

BS11475.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:25 Download gff for BS11475.complete
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:29 Download gff for BS11475.complete
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 79..511 9..445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:15 Download gff for BS11475.complete
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 87..513 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:25 Download gff for BS11475.complete
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 79..511 9..445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:30 Download gff for BS11475.complete
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 87..513 17..443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:30 Download gff for BS11475.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4403337..4403414 17..94 100 -> Plus
2L 4403514..4403862 95..443 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:15 Download gff for BS11475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4403337..4403414 17..94 100 -> Plus
arm_2L 4403514..4403862 95..443 100   Plus

BS11475.pep Sequence

Translation from 16 to 444

> BS11475.pep
MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPACMKMDEVMYSIAE
KVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNN
KINWPLEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY*

BS11475.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-PA 142 CG3058-PA 1..142 1..142 769 100 Plus