Clone Sequence Records
BS11475.3prime Sequence
459 bp (458 high quality bases) assembled on 2006-05-08
> BS11475.3prime
ATGGTCTAGAAAGCTTTTAGTATCTGTACTTGGTAGAGTAGTCCTTGGGC
GAGACTACCAGACCACGGCCCTTACGGGCACCTCGATACACCGTTTCCAC
AATGTCGATCATCTCCTGCTTGTCCTCCAGTGGCCAGTTGATCTTGTTGT
TGTTGCCCGTGCCCAAATCGATCATGATGTGCTTGTTGCGGAAGAAGAAC
ATCACCGTGCAAGGATCGTACAACTCGTACATCTTGTTGAAGTCCGGCAC
CTCGGTAATGTCCACCAAATAGATGACAGCAAAGTTCTTCACCTTCTCGG
CGATGCTGTACATGACCTCATCCATTTTCATGCAGGCGGGGTCCCAATCG
TGACCGAAACGTATTACAACTACTCGGTCCTCCTCGGAGAGAATGGCCTG
GTCCACCTGCCAGCCATTGTGCAAATGAGGGAGCATATACGACATGTCGA
CTGATAACT
BS11475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3058-PA | 429 | CG3058-RA | 1..429 | 445..17 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-RA | 606 | CG3058-RA | 87..515 | 445..17 | 2145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4403514..4403864 | 367..17 | 1755 | 100 | Minus |
2L | 23513712 | 2L | 4403337..4403416 | 445..366 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:28:21 has no hits.
BS11475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:21 Download gff for
BS11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3058-PA | 1..429 | 17..445 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:19 Download gff for
BS11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3058-PA | 1..429 | 17..445 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:04 Download gff for
BS11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 83..515 | 17..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:20 Download gff for
BS11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 83..515 | 17..453 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:20 Download gff for
BS11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4403333..4403414 | 368..453 | 95 | -> | Minus |
2L | 4403514..4403864 | 17..367 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:04 Download gff for
BS11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4403333..4403414 | 368..453 | 95 | -> | Minus |
arm_2L | 4403514..4403864 | 17..367 | 100 | | Minus |
BS11475.5prime Sequence
459 bp (458 high quality bases) assembled on 2006-05-08
> BS11475.5prime
GAAGTTATCAGTCGACATGTCGTATATGCTCCCTCATTTGCACAATGGCT
GGCAGGTGGACCAGGCCATTCTCTCCGAGGAGGACCGAGTAGTTGTAATA
CGTTTCGGTCACGATTGGGACCCCGCCTGCATGAAAATGGATGAGGTCAT
GTACAGCATCGCCGAGAAGGTGAAGAACTTTGCTGTCATCTATTTGGTGG
ACATTACCGAGGTGCCGGACTTCAACAAGATGTACGAGTTGTACGATCCT
TGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGATTTGGG
CACGGGCAACAACAACAAGATCAACTGGCCACTGGAGGACAAGCAGGAGA
TGATCGACATTGTGGAAACGGTGTATCGAGGTGCCCGTAAGGGCCGTGGT
CTGGTAGTCTCGCCCAAGGACTACTCTACCAAGTACAGATACTAAAAGCT
TTCTAGACC
BS11475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3058-PA | 429 | CG3058-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-RA | 606 | CG3058-RA | 87..515 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4403514..4403864 | 95..445 | 1755 | 100 | Plus |
2L | 23513712 | 2L | 4403337..4403416 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 10:28:27 has no hits.
BS11475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:22 Download gff for
BS11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3058-PA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:20 Download gff for
BS11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3058-PA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:25:54 Download gff for
BS11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 83..515 | 9..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:08 Download gff for
BS11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 83..515 | 9..445 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:08 Download gff for
BS11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4403336..4403414 | 16..94 | 98 | -> | Plus |
2L | 4403514..4403864 | 95..445 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:25:54 Download gff for
BS11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4403336..4403414 | 16..94 | 98 | -> | Plus |
arm_2L | 4403514..4403864 | 95..445 | 100 | | Plus |
BS11475.complete Sequence
461 bp assembled on 2006-11-01
GenBank Submission: FJ636884
> BS11475.complete
GAAGTTATCAGTCGACATGTCGTATATGCTCCCTCATTTGCACAATGGCT
GGCAGGTGGACCAGGCCATTCTCTCCGAGGAGGACCGAGTAGTTGTAATA
CGTTTCGGTCACGATTGGGACCCCGCCTGCATGAAAATGGATGAGGTCAT
GTACAGCATCGCCGAGAAGGTGAAGAACTTTGCTGTCATCTATTTGGTGG
ACATTACCGAGGTGCCGGACTTCAACAAGATGTACGAGTTGTACGATCCT
TGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGATTTGGG
CACGGGCAACAACAACAAGATCAACTGGCCACTGGAGGACAAGCAGGAGA
TGATCGACATTGTGGAAACGGTGTATCGAGGTGCCCGTAAGGGCCGTGGT
CTGGTAGTCTCGCCCAAGGACTACTCTACCAAGTACAGATACTAAAAGCT
TTCTAGACCAT
BS11475.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-RA | 429 | CG3058-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-RA | 606 | CG3058-RA | 87..515 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4403514..4403864 | 95..445 | 1755 | 100 | Plus |
2L | 23513712 | 2L | 4403337..4403416 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:53:22 has no hits.
BS11475.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:25 Download gff for
BS11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:29 Download gff for
BS11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 79..511 | 9..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:15 Download gff for
BS11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 87..513 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:25 Download gff for
BS11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 79..511 | 9..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:30 Download gff for
BS11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 87..513 | 17..443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:30 Download gff for
BS11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4403337..4403414 | 17..94 | 100 | -> | Plus |
2L | 4403514..4403862 | 95..443 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:15 Download gff for
BS11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4403337..4403414 | 17..94 | 100 | -> | Plus |
arm_2L | 4403514..4403862 | 95..443 | 100 | | Plus |
BS11475.pep Sequence
Translation from 16 to 444
> BS11475.pep
MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPACMKMDEVMYSIAE
KVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNN
KINWPLEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY*
BS11475.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-PA | 142 | CG3058-PA | 1..142 | 1..142 | 769 | 100 | Plus |