Clone Sequence Records
BS11478.complete Sequence
2063 bp assembled on 2009-12-07
GenBank Submission: KX803167
> BS11478.complete
GAAGTTATCAGTCGACATGGACAGGAGTCGGAGTAGCAGAGCTGCCAGCA
GCAACCAGTTCATCAGGCCATGTGGCCTACTGACGACCGTCATCCTGCTG
CAGACGCTTGTGTCGATGAGTTTGGCCATCGAGGAGATGTCGCCACCACC
GGCCGCCCCGCCACGTCCATCGCCGCCGCCCACCGTGAAGCTCAACAAGT
GCTGCCATTCGGGCGAGTATCTGAACGATGGCACCTGCATCGCCGGCAGC
GAAGCCCTGTGGCTGCCCATGGTGTACTTGGTGCAGCAGCAGCGCTTCTT
CGAGCCCCATGGCGCCAGTCCGCGATTCTTGAAGTTCCTGCCCAATACGA
GACCCACGTGCCGAAAGGACCAGACGACGGAGATCTTTCGCAGCCGCGGA
GCCAATGTGATGCTCTTTCCCAATGGCACGCTCTATGTGCGGGAACGCGC
TCTAATGGTCCAGCCGTCGGATTACTGTGTCGACTGGGAGGTGGCCGTCG
TTTGCTTGAACGACAGTCAGCCGATCAATGCTCTGGAGGATCCCGATTAT
GCAGCCAATCCTCTCGTGCAGCAGGAGCCGCCCAAGGCTAGCCTGCGACT
GAGCAAGTGCTGCGGCAAGTGGGGCAGCTATAACACGCAGCTCCAGAACT
GCGATCTGCAGCCCAACCATCAGGCAGCCGTCGATGGACTGCTGCGATTG
TCGCCGCAGCTACCGGAGGGCAGCTATCAGACTAGCTACGGCCTGCCCGA
CTGTGGCCAACCCGGTGGCTACTCCATTGCCGGTGATTGGCAGGATGCCA
AGCTGGATCGGAACACGGCCATGCTCCAGTTGCCGCACAAGAACCTCAGC
GCCGGACAATACTGCCTGGAGCACACGCAGCGCGAGGGCGAGGTGAAGAT
CATAGCCTGCCAGCATTTGTTTAGCTCCGCGGCAGGAGCCGGCATCCACG
ACGGCTCCATTGGAGGCACCATCGAGCAGGCCAATGGCCAGAATCTGCAG
AAGGCCGTCCTGACTGGTGGCATACTTGTGTCCATTGTCTTCCTGTCCGC
CACTTTGGTGGCCGGCTTCCTGCTGCCCGCTGTGCATCATGCGCTTCATT
GGCGCTGCCAAATCTGCTATGTCACCTGCTTGCTATTCGGCAAAATACTG
CTGGCCATCGAGGAGCTGAGCTCCAGCCTGCAGCCGGGCAGTGCCGCCTG
CCATACGCTTGCTATCACCATGCAGTTCTTCTTTCTGGCCGCCTTCTTTT
GGCTGAACACCATGTGCTTCAACATCTGGTGGACGTTCCGGGACTTTCGG
CCCAGTTCGTTGGAACGCAATCAGGAGGCACTGCGTCGCTATCTGTACTC
CCTGTACGCTTGGGGCGGTCCTCTGCTTATCACCTTCGTGGCCGCCTGCG
TGGACCAGCTGCCGGAGACGACGCTACTGCGTCCGGGATTCGGACAGCTC
TACTGCTGGTTCGACAATCGCAATCTCTCGATCTTCGCCTACTTCTACGG
ACCCATTGGCCTGCTGCTGTGCGCCAATATAGCGCTCTTCGTGTCCACCA
CCCATCAGTTGACGTGCGGCCTGTGGAAACGGGACGATGTCAAGTCCTCA
TCGGAGAAGTCCGCCCTGGGACGCGTCTGCCTGAAGCTAGTCGTCGTTAT
GGGTGTCACCTGGATAGCGGACATTCTGTCCTGGCTAGTGGGTGGACCGC
ATGGCGTATGGTTCTTCACCGACCTGATCAACGCCCTGCAAGGCGTCTTC
ATCTTCATCGTGGTGGGCTGCCAGCCGCAGGTGTGGACCGCCTGCCGCAG
GATCTTCTGTCCGCGATTGCGTCATGACATCACCAATACGACCAACGGTG
TCCAGCATTCGAGCAGCTCGCAGGGTTTGCCCTCGATGGCCGGCGGCACG
GAGATTACACAGAACACCACCACCACCACCACGACAACCAACACGACCGC
CACTCACATGCCCAGCAATCCGGCGGAGGATGAGGTACCGGAGAAGGCTC
CCATTGCCCCCGTCGCACCCATCGTCAAAATGGAGACCATTTGCTAAAAG
CTTTCTAGACCAT
BS11478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl1-RB | 2031 | CG4521-PB | 1..2031 | 17..2047 | 10155 | 100 | Plus |
| mthl1-RA | 2031 | CG4521-PA | 1..2031 | 17..2047 | 10155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl1-RB | 5083 | CG4521-RB | 510..2541 | 17..2048 | 10160 | 100 | Plus |
| mthl1-RA | 4471 | CG4521-RA | 510..2541 | 17..2048 | 10160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16641477..16643508 | 17..2048 | 10160 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:09:05 has no hits.
BS11478.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:13 Download gff for
BS11478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 573..2601 | 17..2045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:16 Download gff for
BS11478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 510..2538 | 17..2045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:34 Download gff for
BS11478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 573..2601 | 17..2045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:04 Download gff for
BS11478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 510..2538 | 17..2045 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:04 Download gff for
BS11478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16641477..16643505 | 17..2045 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:16 Download gff for
BS11478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16535510..16537538 | 17..2045 | 100 | | Plus |
BS11478.3prime Sequence
854 bp (759 high quality bases) assembled on 2006-05-08
> BS11478.3prime
ATGGTCTAGAAAGCTTTTAGCAAATGGTCTCCATTTTGACGATGGGTGCG
ACGGGGGCAATGGGAGCCTTCTCCGGTACCTCATCCTCCGCCGGATTGCT
GGGCATGTGAGTGGCGGTCGTGTTGGTTGTCGTGGTGGTGGTGGTGGTGT
TCTGTGTAATCTCCGTGCCGCCGGCCATCGAGGGCAAACCCTGCGAGCTG
CTCGAATGCTGGACACCGTTGGTCGTATTGGTGATGTCATGACGCAATCG
CGGACAGAAGATCCTGCGGCAGGCGGTCCACACCTGCGGCTGGCAGCCCA
CCACGATGAAGATGAAGACGCCTTGCAGGGCGTTGATCAGGTCGGTGAAG
AACCATACGCCATGCGGTCCACCCACTAGCCAGGACAGAATGTCCGCTAT
CCAGGTGACACCCATAACGACGACTAGCTTCAGGCAGACGCGTCCCAGGG
CGGACTTCTCCGATGAGGACTTGACATCGTCCCGTTTCCACAGGCCGCAC
GTCAACTGATGGGTGGTGGACACGAAGAGCGCTATATTGGCGCACAGCAG
CAGGCCAATGGGTCCGTAGAAGTAGGCGAAGATCGAGAGATTGCGATTGT
CGAACCAGCAGTAGAGCTGTCCGAATCCCGGACGCAGTAGCGTCGTCTCC
GGCAGCTGGTCCACGCAGGCGGCCACGAAGGTGATAAGCAGAGGACCGCC
CCAAGCGTACAGGGAGTACAGATAGCGACGCAGTGCCTCCTGATTGCGTT
CCAACGAACTGGGCCGAAAGTCCCGGAACGTCCACCAGATGTTGAAGCAC
ATGGTGTTCAGCCAAAAGAAGGCGGCCAGAAAGAAGAACTGCATGGTGAT
AGCA
BS11478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4521-PA | 2031 | mthl1-RA | 1194..2031 | 854..17 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl1-RB | 5083 | CG4521-RB | 1703..2541 | 854..16 | 4195 | 100 | Minus |
| mthl1-RA | 4471 | CG4521-RA | 1703..2541 | 854..16 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16642670..16643508 | 854..16 | 4195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:54:20 has no hits.
BS11478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:25 Download gff for
BS11478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-PA | 1195..2031 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:26 Download gff for
BS11478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4521-PA | 1195..2031 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:17 Download gff for
BS11478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 1704..2541 | 16..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:04 Download gff for
BS11478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 1704..2541 | 16..853 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:04 Download gff for
BS11478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16642671..16643508 | 16..853 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:17 Download gff for
BS11478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16536704..16537541 | 16..853 | 100 | | Minus |
BS11478.5prime Sequence
931 bp (854 high quality bases) assembled on 2006-05-08
> BS11478.5prime
GAAGTTATCAGTCGACATGGACAGGAGTCGGAGTAGCAGAGCTGCCAGCA
GCAACCAGTTCATCAGGCCATGTGGCCTACTGACGACCGTCATCCTGCTG
CAGACGCTTGTGTCGATGAGTTTGGCCATCGAGGAGATGTCGCCACCACC
GGCCGCCCCGCCACGTCCATCGCCGCCGCCCACCGTGAAGCTCAACAAGT
GCTGCCATTCGGGCGAGTATCTGAACGATGGCACCTGCATCGCCGGCAGC
GAAGCCCTGTGGCTGCCCATGGTGTACTTGGTGCAGCAGCAGCGCTTCTT
CGAGCCCCATGGCGCCAGTCCGCGATTCTTGAAGTTCCTGCCCAATACGA
GACCCACGTGCCGAAAGGACCAGACGACGGAGATCTTTCGCAGCCGCGGA
GCCAATGTGATGCTCTTTCCCAATGGCACGCTCTATGTGCGGGAACGCGC
TCTAATGGTCCAGCCGTCGGATTACTGTGTCGACTGGGAGGTGGCCGTCG
TTTGCTTGAACGACAGTCAGCCGATCAATGCTCTGGAGGATCCCGATTAT
GCAGCCAATCCTCTCGTGCAGCAGGAGCCGCCCAAGGCTAGCCTGCGACT
GAGCAAGTGCTGCGGCAAGTGGGGCAGCTATAACACGCAGCTCCAGAACT
GCGATCTGCAGCCCAACCATCAGGCAGCCGTCGATGGACTGCTGCGATTG
TCGCCGCAGCTACCGGAGGGCAGCTATCAGACTAGCTACGGCCTGCCCGA
CTGTGGCCAACCCGGTGGCTACTCCATTGCCGGTGATTGGCAGGATGCCA
AGCTGGATCGGAACACGGCCATGCTCCAGTTGCCGCACAAGAACCTCAGC
GCCGGACAATACTGCCTGGAGCACACGCAGCGCGAGGGCGAGGTGAAGAT
CATAGCCTGCCAGCATTTGTTTAGCTCCGCG
BS11478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4521-PA | 2031 | mthl1-RA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl1-RB | 5083 | CG4521-RB | 510..1424 | 17..931 | 4575 | 100 | Plus |
| mthl1-RA | 4471 | CG4521-RA | 510..1424 | 17..931 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16641477..16642391 | 17..931 | 4575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:09:59 has no hits.
BS11478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:10:26 Download gff for
BS11478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-PA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:41:28 Download gff for
BS11478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4521-PA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:16:32 Download gff for
BS11478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 510..1424 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:46:55 Download gff for
BS11478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 510..1424 | 17..931 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:46:55 Download gff for
BS11478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16641477..16642391 | 17..931 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:16:32 Download gff for
BS11478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16535510..16536424 | 17..931 | 100 | | Plus |
BS11478.pep Sequence
Translation from 16 to 2046
> BS11478.pep
MDRSRSSRAASSNQFIRPCGLLTTVILLQTLVSMSLAIEEMSPPPAAPPR
PSPPPTVKLNKCCHSGEYLNDGTCIAGSEALWLPMVYLVQQQRFFEPHGA
SPRFLKFLPNTRPTCRKDQTTEIFRSRGANVMLFPNGTLYVRERALMVQP
SDYCVDWEVAVVCLNDSQPINALEDPDYAANPLVQQEPPKASLRLSKCCG
KWGSYNTQLQNCDLQPNHQAAVDGLLRLSPQLPEGSYQTSYGLPDCGQPG
GYSIAGDWQDAKLDRNTAMLQLPHKNLSAGQYCLEHTQREGEVKIIACQH
LFSSAAGAGIHDGSIGGTIEQANGQNLQKAVLTGGILVSIVFLSATLVAG
FLLPAVHHALHWRCQICYVTCLLFGKILLAIEELSSSLQPGSAACHTLAI
TMQFFFLAAFFWLNTMCFNIWWTFRDFRPSSLERNQEALRRYLYSLYAWG
GPLLITFVAACVDQLPETTLLRPGFGQLYCWFDNRNLSIFAYFYGPIGLL
LCANIALFVSTTHQLTCGLWKRDDVKSSSEKSALGRVCLKLVVVMGVTWI
ADILSWLVGGPHGVWFFTDLINALQGVFIFIVVGCQPQVWTACRRIFCPR
LRHDITNTTNGVQHSSSSQGLPSMAGGTEITQNTTTTTTTTNTTATHMPS
NPAEDEVPEKAPIAPVAPIVKMETIC*
BS11478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl1-PB | 676 | CG4521-PB | 1..676 | 1..676 | 3626 | 100 | Plus |
| mthl1-PA | 676 | CG4521-PA | 1..676 | 1..676 | 3626 | 100 | Plus |
| mthl10-PG | 575 | CG17061-PG | 189..546 | 257..645 | 353 | 26.5 | Plus |
| mthl10-PF | 575 | CG17061-PF | 189..546 | 257..645 | 353 | 26.5 | Plus |
| mthl10-PE | 575 | CG17061-PE | 189..546 | 257..645 | 353 | 26.5 | Plus |
